NO13G01950.1, NO13G01950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01950.1
Unique NameNO13G01950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length882
Alignment locationchr13:566014..566895 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:566014..566895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01950.1 vs.
Match: EWM21870.1 (kelch-like protein diablo [Nannochloropsis gaditana])

HSP 1 Score: 356.3 bits (913), Expect = 9.100e-95
Identity = 173/246 (70.33%), Postives = 194/246 (78.86%), Query Frame = 0 
Query:   49 RREAQWNKKQELQTARCFLASITDLQGRLYALGGGESIWQGARVLNTTEILDDPLAS-ACAWRMGPAMMEARCGLSAALDTHGHIYVAGGYGGGTRYSSSVEVLRVGDDSEGATRGWLADAVPPMQVARTGFGLAFGPDRGLVAVGGSPDGLHSHRTAERYDDREGRWRWLPRMMTPRGYCAVAFGTSGLLYVVGGEAGDANENARNPVVEIFDPRADRWRAWVGPGDPGKDGMDRVDLGLVWALV 294
            RRE  W   Q L+TARCFLAS+TDLQGRLYALGGGESIWQGARVL +TEI+++PLA     WR GP M++ARCGL+AA    G IY AGGYGGGT Y SSVEVLR GD SEGATR WL D V PM VARTGFGLAFGPD  L AVGGSPDGLHSHR  E+YD REGRWRWLP M+TPRGYC+ AFG SGLLYVVGG+AG  N++A   VVE++DPRAD+WR +   G     G+DRVDLG+VWALV
Sbjct:  238 RRERMWTSLQPLETARCFLASVTDLQGRLYALGGGESIWQGARVLKSTEIMEEPLARLTMPWRPGPCMVKARCGLAAAASITGDIYAAGGYGGGTTYLSSVEVLRAGD-SEGATREWLVDVVRPMHVARTGFGLAFGPDGCLFAVGGSPDGLHSHRRGEKYDVREGRWRWLPLMITPRGYCSAAFGPSGLLYVVGGQAGVTNDDAITSVVEVYDPRADKWRQFKSFGGENDSGVDRVDLGVVWALV 482
The following BLAST results are available for this feature:
BLAST of NO13G01950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21870.19.100e-9570.33kelch-like protein diablo [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01950NO13G01950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01950.1NO13G01950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01950.1.cds1NO13G01950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01950.1 ID=NO13G01950.1|Name=NO13G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
ATGATCCCGAGGATGCAGACTTTGACCATAGTTCATAACGCGACGACAAT
GGTGACCAGTAGCAGCAGCAGCACGATCAGCGGCGGGAGCAGCAGCAACA
GCAACGAACGAACAACTCCTCCGACCATCGCCACTACCCTCTGTCGACGC
GAGGCACAGTGGAATAAAAAGCAAGAACTTCAGACTGCCCGTTGCTTTCT
CGCTTCCATTACGGACCTTCAAGGCCGCTTGTATGCCCTGGGAGGAGGAG
AGAGCATCTGGCAAGGCGCACGTGTTTTAAATACGACTGAAATTCTCGAT
GACCCCCTTGCCTCTGCCTGTGCCTGGCGAATGGGCCCCGCCATGATGGA
AGCTCGTTGCGGCTTATCAGCGGCGTTGGACACGCATGGTCATATTTATG
TTGCGGGAGGATATGGAGGTGGGACGCGGTATTCATCTTCGGTGGAAGTG
CTTCGTGTGGGTGATGATTCGGAGGGGGCAACGCGCGGATGGCTAGCTGA
TGCGGTGCCACCGATGCAAGTGGCACGGACAGGGTTTGGCTTGGCATTCG
GTCCGGATCGTGGTCTGGTGGCGGTGGGCGGGTCGCCAGACGGTTTGCAC
AGCCATCGGACAGCAGAGCGGTACGACGACCGGGAAGGCCGTTGGAGGTG
GTTGCCGAGAATGATGACGCCTCGCGGTTACTGCGCGGTGGCATTTGGGA
CGTCGGGGTTGCTCTATGTGGTGGGAGGAGAGGCGGGCGACGCGAACGAA
AATGCCAGGAATCCCGTGGTCGAAATTTTTGATCCACGGGCAGATCGGTG
GCGGGCTTGGGTGGGGCCAGGGGATCCGGGGAAGGATGGGATGGACCGGG
TAGATTTGGGGTTGGTCTGGGCGCTGGTGTGA
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protein sequence of NO13G01950.1

>NO13G01950.1-protein ID=NO13G01950.1-protein|Name=NO13G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MIPRMQTLTIVHNATTMVTSSSSSTISGGSSSNSNERTTPPTIATTLCRR
EAQWNKKQELQTARCFLASITDLQGRLYALGGGESIWQGARVLNTTEILD
DPLASACAWRMGPAMMEARCGLSAALDTHGHIYVAGGYGGGTRYSSSVEV
LRVGDDSEGATRGWLADAVPPMQVARTGFGLAFGPDRGLVAVGGSPDGLH
SHRTAERYDDREGRWRWLPRMMTPRGYCAVAFGTSGLLYVVGGEAGDANE
NARNPVVEIFDPRADRWRAWVGPGDPGKDGMDRVDLGLVWALV*
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mRNA from alignment at chr13:566014..566895-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01950.1 ID=NO13G01950.1|Name=NO13G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=882bp|location=Sequence derived from alignment at chr13:566014..566895- (Nannochloropsis oceanica)
ATGATCCCGAGGATGCAGACTTTGACCATAGTTCATAACGCGACGACAAT
GGTGACCAGTAGCAGCAGCAGCACGATCAGCGGCGGGAGCAGCAGCAACA
GCAACGAACGAACAACTCCTCCGACCATCGCCACTACCCTCTGTCGACGC
GAGGCACAGTGGAATAAAAAGCAAGAACTTCAGACTGCCCGTTGCTTTCT
CGCTTCCATTACGGACCTTCAAGGCCGCTTGTATGCCCTGGGAGGAGGAG
AGAGCATCTGGCAAGGCGCACGTGTTTTAAATACGACTGAAATTCTCGAT
GACCCCCTTGCCTCTGCCTGTGCCTGGCGAATGGGCCCCGCCATGATGGA
AGCTCGTTGCGGCTTATCAGCGGCGTTGGACACGCATGGTCATATTTATG
TTGCGGGAGGATATGGAGGTGGGACGCGGTATTCATCTTCGGTGGAAGTG
CTTCGTGTGGGTGATGATTCGGAGGGGGCAACGCGCGGATGGCTAGCTGA
TGCGGTGCCACCGATGCAAGTGGCACGGACAGGGTTTGGCTTGGCATTCG
GTCCGGATCGTGGTCTGGTGGCGGTGGGCGGGTCGCCAGACGGTTTGCAC
AGCCATCGGACAGCAGAGCGGTACGACGACCGGGAAGGCCGTTGGAGGTG
GTTGCCGAGAATGATGACGCCTCGCGGTTACTGCGCGGTGGCATTTGGGA
CGTCGGGGTTGCTCTATGTGGTGGGAGGAGAGGCGGGCGACGCGAACGAA
AATGCCAGGAATCCCGTGGTCGAAATTTTTGATCCACGGGCAGATCGGTG
GCGGGCTTGGGTGGGGCCAGGGGATCCGGGGAAGGATGGGATGGACCGGG
TAGATTTGGGGTTGGTCTGGGCGCTGGTGTGA
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Coding sequence (CDS) from alignment at chr13:566014..566895-

>NO13G01950.1 ID=NO13G01950.1|Name=NO13G01950.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr13:566014..566895- (Nannochloropsis oceanica)
ATGATCCCGAGGATGCAGACTTTGACCATAGTTCATAACGCGACGACAAT
GGTGACCAGTAGCAGCAGCAGCACGATCAGCGGCGGGAGCAGCAGCAACA
GCAACGAACGAACAACTCCTCCGACCATCGCCACTACCCTCTGTCGACGC
GAGGCACAGTGGAATAAAAAGCAAGAACTTCAGACTGCCCGTTGCTTTCT
CGCTTCCATTACGGACCTTCAAGGCCGCTTGTATGCCCTGGGAGGAGGAG
AGAGCATCTGGCAAGGCGCACGTGTTTTAAATACGACTGAAATTCTCGAT
GACCCCCTTGCCTCTGCCTGTGCCTGGCGAATGGGCCCCGCCATGATGGA
AGCTCGTTGCGGCTTATCAGCGGCGTTGGACACGCATGGTCATATTTATG
TTGCGGGAGGATATGGAGGTGGGACGCGGTATTCATCTTCGGTGGAAGTG
CTTCGTGTGGGTGATGATTCGGAGGGGGCAACGCGCGGATGGCTAGCTGA
TGCGGTGCCACCGATGCAAGTGGCACGGACAGGGTTTGGCTTGGCATTCG
GTCCGGATCGTGGTCTGGTGGCGGTGGGCGGGTCGCCAGACGGTTTGCAC
AGCCATCGGACAGCAGAGCGGTACGACGACCGGGAAGGCCGTTGGAGGTG
GTTGCCGAGAATGATGACGCCTCGCGGTTACTGCGCGGTGGCATTTGGGA
CGTCGGGGTTGCTCTATGTGGTGGGAGGAGAGGCGGGCGACGCGAACGAA
AATGCCAGGAATCCCGTGGTCGAAATTTTTGATCCACGGGCAGATCGGTG
GCGGGCTTGGGTGGGGCCAGGGGATCCGGGGAAGGATGGGATGGACCGGG
TAGATTTGGGGTTGGTCTGGGCGCTGGTGTGA
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Synonyms
Publications