NO13G01670, NO13G01670 (gene) Nannochloropsis oceanica

Overview
NameNO13G01670
Unique NameNO13G01670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length937
Alignment locationchr13:495872..496808 -

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Properties
Property NameValue
Descriptionvacuolar protein sorting-associated protein 20.2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:495872..496808 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007034vacuolar transport
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Homology
BLAST of NO13G01670 vs. NCBI_GenBank
Match: EWM21846.1 (snf7 family protein [Nannochloropsis gaditana])

HSP 1 Score: 253.8 bits (647), Expect = 6.100e-64
Identity = 138/176 (78.41%), Postives = 157/176 (89.20%), Query Frame = 0
Query:   13 MGGLFSRH--HGHGRKPK--VLVTDHDRAVLDLKIAKDKLKRYQIKMRSESIRLTEQAKELVAVGRKDRALLVLKMRRLREDEQVKAESQLMNMEQLITQIEWETQQMQVFDALKSGNQALDAIHEIMSLEEVEKLMADTADSIEYEQEVSRLLSGSLSAGAEEEVMMEFEELQAL 185
            MGGLFSRH  H  G+ PK  V +TDHDRAVLDLK+AKD+LKRYQ+KM SE +RLTE+AKELV  GRKDRALLVLKMRRLREDEQ KA  QL+N+EQLITQIEWE +Q+QVFDALKSGNQAL+AIH+I+SLEEV+KLMADTADSI YEQE+SRLLS +LSAGAEEEV+ EF+ELQAL
Sbjct:    1 MGGLFSRHGRHHGGKSPKKPVQITDHDRAVLDLKVAKDRLKRYQMKMHSEKMRLTEKAKELVTAGRKDRALLVLKMRRLREDEQAKAAGQLLNVEQLITQIEWEREQLQVFDALKSGNQALEAIHKIVSLEEVDKLMADTADSIAYEQEISRLLSNNLSAGAEEEVLREFDELQAL 176          
BLAST of NO13G01670 vs. NCBI_GenBank
Match: CBJ26544.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 149.8 bits (377), Expect = 1.200e-32
Identity = 89/185 (48.11%), Postives = 129/185 (69.73%), Query Frame = 0
Query:   13 MGGLFSRHHGHGRKPKVLVTDHDRAVLDLKIAKDKLKRYQIKMRSESIRLTEQAKELVAVGRKDRALLVLKMRRLREDEQVKAESQLMNMEQLITQIEWETQQMQVFDALKSGNQALDAIHEIMSLEEVEKLMADTADSIEYEQEVSRLLSGSLSAGAEEEVMMEFEELQALTGLVPDAAAPFPV 198
            MG L SR     ++ +  VTD DRAVLDLK ++D+L RYQ K+  E  +L  QA  +V   RKDRALL+LK+++L++D+  KA SQL+++ Q++  I+WETQQ+QVF+ALK GN AL+ +HE M L++VE+LMADTA+SI  E+E+S+ + GS +   EE+++ E  EL++        AAP PV
Sbjct:    1 MGNLMSRKK---KRERDHVTDQDRAVLDLKNSRDRLTRYQKKLDLECAKLQAQAAAMVKEKRKDRALLLLKIKKLKQDQADKASSQLLSVHQMMDTIDWETQQLQVFNALKEGNVALNKLHEEMPLDKVEELMADTAESIAMEEEISKAIGGSWTDANEEDLLAELAELES-------EAAPEPV 175          
BLAST of NO13G01670 vs. NCBI_GenBank
Match: OQR99334.1 (hydroxymethylglutaryl-CoA lyase, mitochondrial precursor [Thraustotheca clavata])

HSP 1 Score: 134.8 bits (338), Expect = 4.100e-28
Identity = 73/168 (43.45%), Postives = 115/168 (68.45%), Query Frame = 0
Query:   16 LFSRHHGHGRKPKVLVTDHDRAVLDLKIAKDKLKRYQIKMRSESIRLTEQAKELVAVGRKDRALLVLKMRRLREDEQVKAESQLMNMEQLITQIEWETQQMQVFDALKSGNQALDAIHEIMSLEEVEKLMADTADSIEYEQEVSRLLSGSLSAGAEEEVMMEFEELQA 184
            L +R   +  K K  V+D D+AVL+LK ++D+LK+YQ ++  +S  L  +A+EL+A   KDRALL LKMR+ +  +  +A++ LMN+  +I  +EWE+QQ+Q+F  LK+GN  LDAIH+ M++E VE LM +T ++  +  E+SR+L G+LS   E+ V+ E  E++A
Sbjct:  673 LAARRAANVAKAKNQVSDKDKAVLELKASRDRLKKYQKQLEKDSEALQNKARELIANKHKDRALLCLKMRKFKLQQLEQADNHLMNVHTMIDSVEWESQQLQIFQGLKAGNAVLDAIHKEMTVEAVEDLMLETQEAQAHADEISRILGGALSTQDEDAVLAELAEIEA 840          
BLAST of NO13G01670 vs. NCBI_GenBank
Match: XP_012197271.1 (hypothetical protein SPRG_03304 [Saprolegnia parasitica CBS 223.65] >KDO32084.1 hypothetical protein SPRG_03304 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 133.3 bits (334), Expect = 1.200e-27
Identity = 83/216 (38.43%), Postives = 132/216 (61.11%), Query Frame = 0
Query:   13 MGGLFS------------RHHGHGRKPKVLVTDHDRAVLDLKIAKDKLKRYQIKMRSESIRLTEQAKELVAVGRKDRALLVLKMRRLREDEQVKAESQLMNMEQLITQIEWETQQMQVFDALKSGNQALDAIHEIMSLEEVEKLMADTADSIEYEQEVSRLLSGSLSAGAEEEVMMEFEELQALT-----GLVPDAAAPFPVTSAAPAVTDAEAPP 212
            MGG+FS            RH  +  K +  V+  D+A+L+LK ++D+LK+YQ  +  ES  L  +A++L+A  +KDRA+L LKMR+ +  +  +A++ L+N+ Q+I  +EWE+QQ+Q+F+ LK+GN  LDAIH+ M++E VE LM +T ++  +  E+SR+L G+LS   E+ V+ E  E++A        + PD     P+  A  A  D  APP
Sbjct:    1 MGGVFSKKTPAPANAAAERHAANRAKAQQQVSSKDKAMLELKASRDRLKKYQKALEVESATLESKARQLLAKKQKDRAMLCLKMRKFKLQQIEQADTHLLNVHQMIGSVEWESQQLQIFEGLKAGNSVLDAIHKEMTIEAVEDLMLETQEAQAHADEISRILGGALSTQDEDAVLAELAEIEAAAFEAQLPIAPDDVLVAPLPEAPTA--DVVAPP 214          
BLAST of NO13G01670 vs. NCBI_GenBank
Match: XP_009838459.1 (hypothetical protein H257_12820 [Aphanomyces astaci] >ETV72016.1 hypothetical protein H257_12820 [Aphanomyces astaci])

HSP 1 Score: 132.9 bits (333), Expect = 1.600e-27
Identity = 82/218 (37.61%), Postives = 135/218 (61.93%), Query Frame = 0
Query:   15 GLFSRHHGHGRKPKVLVTDHDRAVLDLKIAKDKLKRYQIKMRSESIRLTEQAKELVAVGRKDRALLVLKMRRLREDEQVKAESQLMNMEQLITQIEWETQQMQVFDALKSGNQALDAIHEIMSLEEVEKLMADTADSIEYEQEVSRLLSGSLSAGAEEEVMMEFE-----ELQALTGLVPDAAAPFPVTSAAPAVTDAEAPPMAAEEKEAVAGKPSKA 228
            G  +R   + ++ +  V+  D+AVL+LK ++D+LK+YQ  +  ES +LTE+AK+L+   ++DRA L L++R+ ++ +  +A++ LMN+ Q++  +EWETQQ+Q+F+ LK+GN  LDAIH+ M++E VE LM DT ++     E+ RL+ GSL+   +E ++ E       E +AL  L+P A A   V +    V   E   +A   K A + K +KA
Sbjct:   15 GPTARQTANRQRAQNQVSSKDKAVLELKASRDRLKKYQSHLEHESAQLTEKAKQLLEKKQRDRAKLCLQLRKFKQQQIEQADTHLMNVLQMVDSVEWETQQLQIFEGLKAGNSVLDAIHKEMTVEAVEDLMLDTQEAQARADEIGRLIGGSLTVDDDESILEELAAIEALEAEALDALLPVAPAHDAVMAEPAEVVTPEQVQVAVPPKPAASAKKTKA 232          
BLAST of NO13G01670 vs. NCBI_GenBank
Match: XP_008618432.1 (hypothetical protein SDRG_14103 [Saprolegnia diclina VS20] >EQC28146.1 hypothetical protein SDRG_14103 [Saprolegnia diclina VS20])

HSP 1 Score: 132.1 bits (331), Expect = 2.700e-27
Identity = 83/225 (36.89%), Postives = 135/225 (60.00%), Query Frame = 0
Query:   13 MGGLFS-------------RHHGHGRKPKVLVTDHDRAVLDLKIAKDKLKRYQIKMRSESIRLTEQAKELVAVGRKDRALLVLKMRRLREDEQVKAESQLMNMEQLITQIEWETQQMQVFDALKSGNQALDAIHEIMSLEEVEKLMADTADSIEYEQEVSRLLSGSLSAGAEEEVMMEFEELQALTGLVPDAAAPFP----VTSAAPAVTDAEAPPMAAEEKEAV 221
            MGG+FS             RH  +  K +  V+  D+A+L+LK ++D+LK+YQ  + +ES  L  +A++L+A  +KDRA+L LKMR+ +  +  +A++ L+N+ Q+I  +EWE+QQ+Q+F+ LK+GN  LDAIH+ M++E VE LM +T ++  +  E+SR+L G+LS   E+ V+ E  E++A      +A  P      + +A P V  A     AA   + V
Sbjct:    1 MGGVFSKKTPAPATNAAAERHAANRAKAQQQVSSKDKAMLELKASRDRLKKYQKALEAESATLESKARQLLAKKQKDRAMLCLKMRKFKLQQIEQADTHLLNVHQMIGSVEWESQQLQIFEGLKAGNSVLDAIHKEMTIEAVEDLMLETQEAQAHADEISRILGGALSTQDEDAVLAELAEIEAAETAALEAQLPIAPDDVLVAALPEVPAASVVAPAARRAKPV 225          
BLAST of NO13G01670 vs. NCBI_GenBank
Match: XP_004333037.1 (charged multivesicular body protein, putative [Acanthamoeba castellanii str. Neff] >ELR11024.1 charged multivesicular body protein, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 129.8 bits (325), Expect = 1.300e-26
Identity = 90/220 (40.91%), Postives = 130/220 (59.09%), Query Frame = 0
Query:   13 MGGLFSRHHGHGRKPKVLVTDHDRAVLDLKIAKDKLKRYQIKMRSESIRLTEQAKELVAVGRKDRALLVLKMRRLREDEQVKAESQLMNMEQLITQIEWETQQMQVFDALKSGNQALDAIHEIMSLEEVEKLMADTADSIEYEQEVSRLLSGSLSAGAEEEVMMEFEEL--QALTGLVPDAAAPFPVTSAAPAVTDAEAPPMAAEEKEAVAGKPSKAPQA 231
            MGGLFS       K    V+ HD+AVLDLK+ +DKL +YQ KMR+   + TE A+EL+  G++ +ALL LK +R +E    K+E+QL N++++I  +E+   + +VFD LK+GN+ L  I   MSL  VE+LMADT ++I ++QE+  +L+G L+   EE ++ E +EL  QA    VP       V +  P  TD   P  A   K  V  K  +AP A
Sbjct:    1 MGGLFS---SSATKKAPRVSSHDKAVLDLKVQRDKLTQYQKKMRAVVEKETEMARELLRKGQRPKALLALKKKRFQEQLLAKSEAQLSNLQEMIDSVEFAQMEKRVFDGLKAGNEVLKEIQAEMSLNAVEELMADTQEAIAHQQEIENILAGKLTDEDEEAILAELDELVQQAEQEGVPQMP---EVPAGEPTATD---PQKATAAKTKVKAKRQEAPLA 211          
BLAST of NO13G01670 vs. NCBI_GenBank
Match: OQR94649.1 (hydroxymethylglutaryl-CoA lyase, mitochondrial precursor [Achlya hypogyna])

HSP 1 Score: 129.0 bits (323), Expect = 2.300e-26
Identity = 79/216 (36.57%), Postives = 134/216 (62.04%), Query Frame = 0
Query:   18 SRHHGHGRKPKVLVTDHDRAVLDLKIAKDKLKRYQIKMRSESIRLTEQAKELVAVGRKDRALLVLKMRRLREDEQVKAESQLMNMEQLITQIEWETQQMQVFDALKSGNQALDAIHEIMSLEEVEKLMADTADSIEYEQEVSRLLSGSLSAGAEEEVMMEFEELQALTGLVPDAAAPFPVTSAAPAVTDAEAPPMAAEE-KEAVAGKPSKAPQAGT 233
            +RH  +  K +  V+  D+A+L+LK ++D+LK+YQ ++ +ES  L   A++L+A  +KDRA+L LKMR+ +  +  +A++ L+N+  +I  +EWETQQ+Q+F+ LK+GN  LDAIH+ M++E VE LM +T ++  +  E+SR+L G+L+   E+ V+ E  E++   G      A  P+      +T  EAP  A E+ K+++       P + T
Sbjct:   17 ARHAANRAKAQNQVSAKDKAILELKASRDRLKKYQKQLEAESTTLEANARQLLAKKQKDRAMLCLKMRKFKLQQIAQADTHLLNVHTMIDSVEWETQQLQIFEGLKAGNSVLDAIHKEMTIEAVEDLMLETQEAQAHADEISRMLGGALTVEDEDAVLAELAEIE--RGEAAALEAQLPIAPDDMLLTLPEAPTAAPEKPKKSLVSAQILTPHSET 230          
BLAST of NO13G01670 vs. NCBI_GenBank
Match: GAX97285.1 (hydroxymethylglutaryl-CoA lyase, mitochondrial precursor [Pythium insidiosum])

HSP 1 Score: 126.3 bits (316), Expect = 1.500e-25
Identity = 76/206 (36.89%), Postives = 130/206 (63.11%), Query Frame = 0
Query:   31 VTDHDRAVLDLKIAKDKLKRYQIKMRSESIRLTEQAKELVAVGRKDRALLVLKMRRLREDEQVKAESQLMNMEQLITQIEWETQQMQVFDALKSGNQALDAIHEIMSLEEVEKLMADTADSIEYEQEVSRLLSGSLSAGAEEEVMMEFE-----ELQALTGLVPDA-AAPFPVTSAAPAVTDAEAPPMAAEEKEAVAGKPSKAPQA 231
            VT  D+A+L+LK A+D+LK+YQ ++  ++ +L + AK+L+   ++DRA L LK+++ +E +  +A+  L+ + +++  +EWE+QQ++VF+ LK+GN  LDAIH+ MS+E V+ LM +T ++ E E+E+SRL+ G+L+   E+ V+ E       E +AL   +P+A +AP        A   A+APP            P KAP++
Sbjct:  353 VTSKDKAILELKNARDRLKKYQARLDVDAQQLQDSAKQLLQAEKRDRAKLALKVKKFKEQQIKQADGHLLTVLEMLDTVEWESQQLKVFEGLKAGNSVLDAIHKEMSVEAVQNLMLETEEAQETEREISRLIGGNLTVEDEDAVLAELADIERMEAEALAAALPEAPSAPIETADVVVATEPAQAPP------------PKKAPRS 546          
BLAST of NO13G01670 vs. NCBI_GenBank
Match: XP_007248811.2 (charged multivesicular body protein 6 [Astyanax mexicanus])

HSP 1 Score: 125.2 bits (313), Expect = 3.300e-25
Identity = 70/169 (41.42%), Postives = 114/169 (67.46%), Query Frame = 0
Query:   13 MGGLFSRHHGHGRKPKVLVTDHDRAVLDLKIAKDKLKRYQIKMRSESIRLTEQAKELVAVGRKDRALLVLKMRRLREDEQVKAESQLMNMEQLITQIEWETQQMQVFDALKSGNQALDAIHEIMSLEEVEKLMADTADSIEYEQEVSRLLSGSLSAGAEEEVMMEFEEL 182
            MG +F      G+K +  VT+ DRAVL LK  +DKLK+YQ K+  +  +  + AK+L+  G+KD+ALL+LK +R +E    K E+Q+ N+E+++  IE+   +++V + LK GN  L  +HE+MSLEEVE++M +T D+IEY++++  +L+GSL+   E+ V+ E E +
Sbjct:    1 MGNIF------GKKKRTRVTEQDRAVLQLKQQRDKLKQYQKKVTLQMEKERQLAKQLLKDGKKDKALLLLKKKRFQEQLLDKTENQISNLERMVQDIEFAQIEIKVIEGLKVGNDCLKKMHEVMSLEEVERIMDETHDAIEYQKQIDDILAGSLTQEDEDAVLAELEAI 163          
The following BLAST results are available for this feature:
BLAST of NO13G01670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21846.16.100e-6478.41snf7 family protein [Nannochloropsis gaditana][more]
CBJ26544.11.200e-3248.11conserved unknown protein [Ectocarpus siliculosus][more]
OQR99334.14.100e-2843.45hydroxymethylglutaryl-CoA lyase, mitochondrial pre... [more]
XP_012197271.11.200e-2738.43hypothetical protein SPRG_03304 [Saprolegnia paras... [more]
XP_009838459.11.600e-2737.61hypothetical protein H257_12820 [Aphanomyces astac... [more]
XP_008618432.12.700e-2736.89hypothetical protein SDRG_14103 [Saprolegnia dicli... [more]
XP_004333037.11.300e-2640.91charged multivesicular body protein, putative [Aca... [more]
OQR94649.12.300e-2636.57hydroxymethylglutaryl-CoA lyase, mitochondrial pre... [more]
GAX97285.11.500e-2536.89hydroxymethylglutaryl-CoA lyase, mitochondrial pre... [more]
XP_007248811.23.300e-2541.42charged multivesicular body protein 6 [Astyanax me... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL131nonsL131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001712NSK001712Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01670.1NO13G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596507gene_6839Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100051g11gene8587Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01670.1NO13G01670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01670 ID=NO13G01670|Name=NO13G01670|organism=Nannochloropsis oceanica|type=gene|length=937bp
ATGTTCGCCGTTGGGCTGCTGGCTGCTGgtacgtgggcggagcctctgtg
acctttctaccacgccctacgcaaaaccccgctgccctcagcctaccact
cagcatatcgaccatctccccacagACAATATAATGGGTGGTCTCTTTAG
CAGGCACCACGGACACGGGCGCAAGCCCAAAGTCCTAGTCACCGACCATG
ACCGCGCGGTGCTTGACCTCAAAATTGCGAAGGACAAACTGAAGCGGTAC
CAAATCAAGATGCGAAGCGAGTCAATACGCTTGACAGAGCAAGCCAAAGA
GCTGGTGGCGGTGGGGCGGAAGGACCGGGCGTTGTTGGTGCTGAAAATGC
GGCGCCTCCGCGAAGACGAGCAGGTCAAGGCTGAGTCGCAGTTGATGAAT
ATGGAGCAGCTCATTACCCAAATTGAATGGGAGACTCAGCAGATGCAGGT
GTTTGATGCGCTCAAGAGTGGTAATCAGGCGTTGGACGCCATTCACGAAA
TCATGAGTTTAGAGGAGGTGGAGAAACTGATGGCAGACACGGCCGACTCC
ATCGAATACGAGCAAGAGGTATCCCGGCTCTTGTCAGGCAGCCTGTCCGC
CGGGGCGGAGGAAGAAGTCATGATGGAGTTCGAGGAGCTGCAGGCATTAA
CAGGCTTGGTTCCCGATGCCGCTGCCCCATTCCCGGTCACTTCCGCTGCT
CCTGCCGTCACCGACGCCGAGGCTCCACCCATGGCAGCAGAGGAGAAAGA
GGCAGTGGCAGGAAAGCCATCGAAAGCACCGCAAGCAGGTACTCTTATAC
ATGACTTGCCTGACGTACCAACGCACGAGCCGGTTGTCAAACCGCTGGAG
AAAGAAGAAGAGGTAGTAGCAGCCGGAGCAGCAGTATCAGGAACAGGACT
GCAGAAGGATAGTGTCAGGGTGGCCGTTACGGGTTAA
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protein sequence of NO13G01670.1

>NO13G01670.1-protein ID=NO13G01670.1-protein|Name=NO13G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MFAVGLLAADNIMGGLFSRHHGHGRKPKVLVTDHDRAVLDLKIAKDKLKR
YQIKMRSESIRLTEQAKELVAVGRKDRALLVLKMRRLREDEQVKAESQLM
NMEQLITQIEWETQQMQVFDALKSGNQALDAIHEIMSLEEVEKLMADTAD
SIEYEQEVSRLLSGSLSAGAEEEVMMEFEELQALTGLVPDAAAPFPVTSA
APAVTDAEAPPMAAEEKEAVAGKPSKAPQAGTLIHDLPDVPTHEPVVKPL
EKEEEVVAAGAAVSGTGLQKDSVRVAVTG*
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Synonyms
Publications