NO13G01670.1, NO13G01670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01670.1
Unique NameNO13G01670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length840
Alignment locationchr13:495872..496808 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:495872..496808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01670.1 vs.
Match: EWM21846.1 (snf7 family protein [Nannochloropsis gaditana])

HSP 1 Score: 269.6 bits (688), Expect = 1.100e-68
Identity = 166/280 (59.29%), Postives = 201/280 (71.79%), Query Frame = 0 
Query:   13 MGGLFSRHHGH--GRKPK--VLVTDHDRAVLDLKIAKDKLKRYQIKMRSESIRLTEQAKELVAVGRKDRALLVLKMRRLREDEQVKAESQLMNMEQLITQIEWETQQMQVFDALKSGNQALDAIHEIMSLEEVEKLMADTADSIEYEQEVSRLLSGSLSAGAEEEVMMEFEELQALTGLVPDAAAPFPVTSAAPAVTDAEAPPMAAEEKEAVAGKPSKAPQAGTLIHDLPDVPTHEPVVK--------PLEKE-EEVVAAGAAVSGTGLQKDSVRVAVTG 280
            MGGLFSRH  H  G+ PK  V +TDHDRAVLDLK+AKD+LKRYQ+KM SE +RLTE+AKELV  GRKDRALLVLKMRRLREDEQ KA  QL+N+EQLITQIEWE +Q+QVFDALKSGNQAL+AIH+I+SLEEV+KLMADTADSI YEQE+SRLLS +LSAGAEEEV+ EF+ELQAL  +      P      AP V  A+     A E+  +    ++A +AG+ + DLP+VP HE + K         + KE     A GA      +Q+   +VAV+G
Sbjct:    1 MGGLFSRHGRHHGGKSPKKPVQITDHDRAVLDLKVAKDRLKRYQMKMHSEKMRLTEKAKELVTAGRKDRALLVLKMRRLREDEQAKAAGQLLNVEQLITQIEWEREQLQVFDALKSGNQALEAIHKIVSLEEVDKLMADTADSIAYEQEISRLLSNNLSAGAEEEVLREFDELQAL--IEAPEHTPVEAAPGAPTVVSADMASKDASEQAEI----TEATEAGSSLPDLPEVPKHEILTKTNVDVRRDKISKETTSGNARGAGTEEVHVQEKKAKVAVSG 274
The following BLAST results are available for this feature:
BLAST of NO13G01670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21846.11.100e-6859.29snf7 family protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01670NO13G01670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01670.1NO13G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01670.1.cds1NO13G01670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01670.1.cds2NO13G01670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01670.1 ID=NO13G01670.1|Name=NO13G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=840bp
ATGTTCGCCGTTGGGCTGCTGGCTGCTGACAATATAATGGGTGGTCTCTT
TAGCAGGCACCACGGACACGGGCGCAAGCCCAAAGTCCTAGTCACCGACC
ATGACCGCGCGGTGCTTGACCTCAAAATTGCGAAGGACAAACTGAAGCGG
TACCAAATCAAGATGCGAAGCGAGTCAATACGCTTGACAGAGCAAGCCAA
AGAGCTGGTGGCGGTGGGGCGGAAGGACCGGGCGTTGTTGGTGCTGAAAA
TGCGGCGCCTCCGCGAAGACGAGCAGGTCAAGGCTGAGTCGCAGTTGATG
AATATGGAGCAGCTCATTACCCAAATTGAATGGGAGACTCAGCAGATGCA
GGTGTTTGATGCGCTCAAGAGTGGTAATCAGGCGTTGGACGCCATTCACG
AAATCATGAGTTTAGAGGAGGTGGAGAAACTGATGGCAGACACGGCCGAC
TCCATCGAATACGAGCAAGAGGTATCCCGGCTCTTGTCAGGCAGCCTGTC
CGCCGGGGCGGAGGAAGAAGTCATGATGGAGTTCGAGGAGCTGCAGGCAT
TAACAGGCTTGGTTCCCGATGCCGCTGCCCCATTCCCGGTCACTTCCGCT
GCTCCTGCCGTCACCGACGCCGAGGCTCCACCCATGGCAGCAGAGGAGAA
AGAGGCAGTGGCAGGAAAGCCATCGAAAGCACCGCAAGCAGGTACTCTTA
TACATGACTTGCCTGACGTACCAACGCACGAGCCGGTTGTCAAACCGCTG
GAGAAAGAAGAAGAGGTAGTAGCAGCCGGAGCAGCAGTATCAGGAACAGG
ACTGCAGAAGGATAGTGTCAGGGTGGCCGTTACGGGTTAA
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protein sequence of NO13G01670.1

>NO13G01670.1-protein ID=NO13G01670.1-protein|Name=NO13G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MFAVGLLAADNIMGGLFSRHHGHGRKPKVLVTDHDRAVLDLKIAKDKLKR
YQIKMRSESIRLTEQAKELVAVGRKDRALLVLKMRRLREDEQVKAESQLM
NMEQLITQIEWETQQMQVFDALKSGNQALDAIHEIMSLEEVEKLMADTAD
SIEYEQEVSRLLSGSLSAGAEEEVMMEFEELQALTGLVPDAAAPFPVTSA
APAVTDAEAPPMAAEEKEAVAGKPSKAPQAGTLIHDLPDVPTHEPVVKPL
EKEEEVVAAGAAVSGTGLQKDSVRVAVTG*
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mRNA from alignment at chr13:495872..496808-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01670.1 ID=NO13G01670.1|Name=NO13G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=937bp|location=Sequence derived from alignment at chr13:495872..496808- (Nannochloropsis oceanica)
ATGTTCGCCGTTGGGCTGCTGGCTGCTGGTACGTGGGCGGAGCCTCTGTG
ACCTTTCTACCACGCCCTACGCAAAACCCCGCTGCCCTCAGCCTACCACT
CAGCATATCGACCATCTCCCCACAGACAATATAATGGGTGGTCTCTTTAG
CAGGCACCACGGACACGGGCGCAAGCCCAAAGTCCTAGTCACCGACCATG
ACCGCGCGGTGCTTGACCTCAAAATTGCGAAGGACAAACTGAAGCGGTAC
CAAATCAAGATGCGAAGCGAGTCAATACGCTTGACAGAGCAAGCCAAAGA
GCTGGTGGCGGTGGGGCGGAAGGACCGGGCGTTGTTGGTGCTGAAAATGC
GGCGCCTCCGCGAAGACGAGCAGGTCAAGGCTGAGTCGCAGTTGATGAAT
ATGGAGCAGCTCATTACCCAAATTGAATGGGAGACTCAGCAGATGCAGGT
GTTTGATGCGCTCAAGAGTGGTAATCAGGCGTTGGACGCCATTCACGAAA
TCATGAGTTTAGAGGAGGTGGAGAAACTGATGGCAGACACGGCCGACTCC
ATCGAATACGAGCAAGAGGTATCCCGGCTCTTGTCAGGCAGCCTGTCCGC
CGGGGCGGAGGAAGAAGTCATGATGGAGTTCGAGGAGCTGCAGGCATTAA
CAGGCTTGGTTCCCGATGCCGCTGCCCCATTCCCGGTCACTTCCGCTGCT
CCTGCCGTCACCGACGCCGAGGCTCCACCCATGGCAGCAGAGGAGAAAGA
GGCAGTGGCAGGAAAGCCATCGAAAGCACCGCAAGCAGGTACTCTTATAC
ATGACTTGCCTGACGTACCAACGCACGAGCCGGTTGTCAAACCGCTGGAG
AAAGAAGAAGAGGTAGTAGCAGCCGGAGCAGCAGTATCAGGAACAGGACT
GCAGAAGGATAGTGTCAGGGTGGCCGTTACGGGTTAA
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Coding sequence (CDS) from alignment at chr13:495872..496808-

>NO13G01670.1 ID=NO13G01670.1|Name=NO13G01670.1|organism=Nannochloropsis oceanica|type=CDS|length=840bp|location=Sequence derived from alignment at chr13:495872..496808- (Nannochloropsis oceanica)
ATGTTCGCCGTTGGGCTGCTGGCTGCTGACAATATAATGGGTGGTCTCTT
TAGCAGGCACCACGGACACGGGCGCAAGCCCAAAGTCCTAGTCACCGACC
ATGACCGCGCGGTGCTTGACCTCAAAATTGCGAAGGACAAACTGAAGCGG
TACCAAATCAAGATGCGAAGCGAGTCAATACGCTTGACAGAGCAAGCCAA
AGAGCTGGTGGCGGTGGGGCGGAAGGACCGGGCGTTGTTGGTGCTGAAAA
TGCGGCGCCTCCGCGAAGACGAGCAGGTCAAGGCTGAGTCGCAGTTGATG
AATATGGAGCAGCTCATTACCCAAATTGAATGGGAGACTCAGCAGATGCA
GGTGTTTGATGCGCTCAAGAGTGGTAATCAGGCGTTGGACGCCATTCACG
AAATCATGAGTTTAGAGGAGGTGGAGAAACTGATGGCAGACACGGCCGAC
TCCATCGAATACGAGCAAGAGGTATCCCGGCTCTTGTCAGGCAGCCTGTC
CGCCGGGGCGGAGGAAGAAGTCATGATGGAGTTCGAGGAGCTGCAGGCAT
TAACAGGCTTGGTTCCCGATGCCGCTGCCCCATTCCCGGTCACTTCCGCT
GCTCCTGCCGTCACCGACGCCGAGGCTCCACCCATGGCAGCAGAGGAGAA
AGAGGCAGTGGCAGGAAAGCCATCGAAAGCACCGCAAGCAGGTACTCTTA
TACATGACTTGCCTGACGTACCAACGCACGAGCCGGTTGTCAAACCGCTG
GAGAAAGAAGAAGAGGTAGTAGCAGCCGGAGCAGCAGTATCAGGAACAGG
ACTGCAGAAGGATAGTGTCAGGGTGGCCGTTACGGGTTAA
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Synonyms
Publications