NO13G01490, NO13G01490 (gene) Nannochloropsis oceanica

Overview
NameNO13G01490
Unique NameNO13G01490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2914
Alignment locationchr13:445491..448404 -

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Properties
Property NameValue
DescriptionIron-sulfur cluster assembly accessory protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:445491..448404 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035903HesB-like_dom_sf
IPR000361FeS_biogenesis
Homology
BLAST of NO13G01490 vs. NCBI_GenBank
Match: WP_009633165.1 (iron-sulfur cluster assembly accessory protein [Synechocystis sp. PCC 7509])

HSP 1 Score: 135.2 bits (339), Expect = 2.200e-28
Identity = 67/118 (56.78%), Postives = 88/118 (74.58%), Query Frame = 0
Query:   80 TVEVAERVITVSDSALEHLKDLRTKQGVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            TV+ A+R I +S +AL+HL+ L+ +QG D LYLR+GVR GGCSGMSY++D   + ++ E+D +  YD   F  V DPKSLLYL+GL LD+ + LIGGGF F NPNA ++CGCG SFGV
Sbjct:    5 TVQSAQRGIQLSQAALQHLQALQQQQGKD-LYLRVGVRQGGCSGMSYMMDFEAEANIGEKDQVFDYD--GFKIVSDPKSLLYLYGLMLDYSNALIGGGFQFTNPNAAQTCGCGKSFGV 119          
BLAST of NO13G01490 vs. NCBI_GenBank
Match: GAX29132.1 (iron-sulfur cluster assembly protein [Fistulifera solaris])

HSP 1 Score: 133.7 bits (335), Expect = 6.500e-28
Identity = 71/150 (47.33%), Postives = 96/150 (64.00%), Query Frame = 0
Query:   55 VAKAIATPRTQRGKLFADVAEKNEGTVEV---AERVITVSDSALEHLKDLR---TKQGV-DHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            VA  +  P   R  L+AD  +      +     + V+ +  +A++ L++LR    K  V D L LRMGVRSGGCSGMSYV+D   ++ + E+D ++ Y +    CVVD KS+LYL+GL LD+  +LIGGGF F NPNA+ESCGCGSSFGV
Sbjct:   19 VAWILPHPLAFRTTLYADTTQALPLVTDYEIPEDAVVMIKPAAMKRLRELRQTELKDPVNDTLILRMGVRSGGCSGMSYVMDFSSEDSIQEDDVVDEYADEKVKCVVDAKSMLYLYGLELDYSTELIGGGFKFFNPNAEESCGCGSSFGV 168          
BLAST of NO13G01490 vs. NCBI_GenBank
Match: WP_106369094.1 (iron-sulfur cluster assembly accessory protein [Chlorogloea sp. CCALA 695] >PSB32289.1 iron-sulfur cluster assembly accessory protein [Chlorogloea sp. CCALA 695])

HSP 1 Score: 133.3 bits (334), Expect = 8.500e-28
Identity = 65/118 (55.08%), Postives = 88/118 (74.58%), Query Frame = 0
Query:   80 TVEVAERVITVSDSALEHLKDLRTKQGVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            TV+  +R I +S +AL+HL+ L+ +QG + LYLR+GVR GGCSGMSY++D   + +++E+D +  YD   F  V DPKSLLYL+GL LD+ + LIGGGF F NPNA ++CGCG SFGV
Sbjct:    5 TVQSGQRGIQLSQAALQHLQALQQQQG-NALYLRVGVRQGGCSGMSYMMDFEAESNISEKDQVFDYD--GFKIVSDPKSLLYLYGLMLDYSNALIGGGFQFTNPNAAQTCGCGKSFGV 119          
BLAST of NO13G01490 vs. NCBI_GenBank
Match: WP_072622061.1 (iron-sulfur cluster assembly accessory protein [Spirulina major])

HSP 1 Score: 132.5 bits (332), Expect = 1.400e-27
Identity = 62/116 (53.45%), Postives = 88/116 (75.86%), Query Frame = 0
Query:   82 EVAERVITVSDSALEHLKDLRTKQGVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            +  ++ I +S++ALEHL+ LR++QG D L LR+GVR+GGCSGMSY +D    E++ E+D  E Y+ + F  + DPKSLLY++G++LD+ + LIGGGF F NPNA ++CGCG SFGV
Sbjct:    5 QTPQKGILLSETALEHLQQLRSQQGRD-LCLRVGVRNGGCSGMSYAMDFETAENIREDD--EVYNYNGFRIICDPKSLLYIYGMQLDYSNALIGGGFQFTNPNANQTCGCGKSFGV 117          
BLAST of NO13G01490 vs. NCBI_GenBank
Match: WP_015194559.1 (iron-sulfur cluster assembly accessory protein [Stanieria cyanosphaera] >AFZ36897.1 iron-sulfur cluster assembly accessory protein [Stanieria cyanosphaera PCC 7437])

HSP 1 Score: 131.7 bits (330), Expect = 2.500e-27
Identity = 62/110 (56.36%), Postives = 80/110 (72.73%), Query Frame = 0
Query:   88 ITVSDSALEHLKDLRTKQGVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            I ++D+AL+H+K LR +QG   LYLR+GVR GGCSGMSY++D  +   V + D  E +D   F  V DPKSLLYL+GL LD+ + +IGGGF F NPNA ++CGCG SFGV
Sbjct:   12 IQLTDTALKHIKMLREQQGNKELYLRVGVRQGGCSGMSYMMDFEEPNQVRDND--EVFDYEGFKIVCDPKSLLYLYGLVLDYSNAMIGGGFQFTNPNAAQTCGCGKSFGV 119          
BLAST of NO13G01490 vs. NCBI_GenBank
Match: CEM08917.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 131.7 bits (330), Expect = 2.500e-27
Identity = 77/173 (44.51%), Postives = 99/173 (57.23%), Query Frame = 0
Query:   30 FLIPSAPFTLSSSTLAPL--SSAAAHKVAKAIATPRTQRGKLFADVAEKNEGTVEVAERVITVSDSALEHLKDLRTKQ---GVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            FLI  A   L S        S  +A  VA   +    +R  L              + R I ++  ALE + +LR K+   G   L LRMGV+SGGCSG+SY +D++   DV   D +EAY++  F  VVDPK+LLYLFG++LD+ D LIGGGF F NPNA +SCGCG SFGV
Sbjct:    5 FLILGAAAVLPSEAARRFLQSRGSAAFVAPPASVNAPRRPVLLRRALAVRSSGASTSRRAIDITPKALERIAELRAKKQRDGDGDLVLRMGVKSGGCSGLSYTMDLIDASDVGPRDTVEAYEDEGFKYVVDPKALLYLFGMQLDYCDDLIGGGFRFDNPNADKSCGCGMSFGV 177          
BLAST of NO13G01490 vs. NCBI_GenBank
Match: GAQ89196.1 (Iron-sulphur cluster biosynthesis family protein [Klebsormidium nitens])

HSP 1 Score: 131.7 bits (330), Expect = 2.500e-27
Identity = 66/130 (50.77%), Postives = 92/130 (70.77%), Query Frame = 0
Query:   66 RGKLFADVAEKNEGTVEVAERVITVSDSALEHLKDLRTKQGVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSF 196
            +G++   VA  +  T+  A   I++S+ AL H+K +R + G D L LR+GVR GGCSGMSYV++  ++ ++ EED +   D+ DF+ V DPKSLLYLFG++LD+ D LIGGGF+F NPNA  +CGCG SF
Sbjct:   50 KGRITCSVATPSPPTLPPA---ISLSEKALAHIKRMRNESGKD-LTLRVGVRQGGCSGMSYVMEFEERANIREEDSL--IDQEDFTMVCDPKSLLYLFGMQLDYSDALIGGGFSFQNPNASSTCGCGKSF 173          
BLAST of NO13G01490 vs. NCBI_GenBank
Match: XP_002949272.1 (iron-sulfur cluster assembly protein [Volvox carteri f. nagariensis] >EFJ49765.1 iron-sulfur cluster assembly protein [Volvox carteri f. nagariensis])

HSP 1 Score: 131.0 bits (328), Expect = 4.200e-27
Identity = 65/120 (54.17%), Postives = 85/120 (70.83%), Query Frame = 0
Query:   79 GTVEVAERVITVSDSALEHLKDLRTK-QGVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            GTV      IT++  ALE L+ LR + +  + L LR+GV+ GGCSG+SY +D   ++ V+E+DH+ +YD+  F  VVDPKSLLYLFG+RL +   LIGGGF F NPNA +SCGCG SFGV
Sbjct:   37 GTVTTPASAITLTAEALEQLRKLRAEHKNQESLLLRVGVKQGGCSGLSYHMDFETQDKVSEDDHVMSYDD-GFRLVVDPKSLLYLFGMRLGYSSALIGGGFQFHNPNATDSCGCGKSFGV 155          
BLAST of NO13G01490 vs. NCBI_GenBank
Match: WP_015182004.1 (iron-sulfur cluster assembly accessory protein [Microcoleus sp. PCC 7113] >AFZ17852.1 Iron-sulfur cluster assembly accessory protein [Microcoleus sp. PCC 7113])

HSP 1 Score: 130.6 bits (327), Expect = 5.500e-27
Identity = 64/113 (56.64%), Postives = 82/113 (72.57%), Query Frame = 0
Query:   85 ERVITVSDSALEHLKDLRTKQGVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            +R I ++++AL+H+  LR +QG D LYLR+GVR GGCSGMSY++D      V E+D  E +D   F  V DPKS+LYL+GL LD+ D +IGGGF F NPNA +SCGCG SFGV
Sbjct:    9 QRGIQLTEAALKHVLALRQRQGKD-LYLRVGVRQGGCSGMSYMMDFEDPSKVQEKD--EVFDYEGFKIVCDPKSMLYLYGLVLDYSDAMIGGGFQFTNPNASQSCGCGKSFGV 118          
BLAST of NO13G01490 vs. NCBI_GenBank
Match: WP_022605156.1 (iron-sulfur cluster assembly accessory protein [Rubidibacter lacunae] >ERN42413.1 Iron-sulfur cluster assembly accessory protein [Rubidibacter lacunae KORDI 51-2])

HSP 1 Score: 130.6 bits (327), Expect = 5.500e-27
Identity = 60/110 (54.55%), Postives = 82/110 (74.55%), Query Frame = 0
Query:   88 ITVSDSALEHLKDLRTKQGVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            I V+D+A++HL+ LR +Q  D L LR+GVR GGCSGMSY +D    +++ ++D + AY E  F  +VDPKSLLY++G++LD+   LIGGGF F NPNA ++CGCG SFGV
Sbjct:   11 ILVTDTAMQHLRQLRAQQSAD-LCLRVGVRGGGCSGMSYTMDFDSADNIRDDDEVFAY-EDGFRIIVDPKSLLYIYGMQLDYSTALIGGGFQFSNPNASQTCGCGKSFGV 118          
The following BLAST results are available for this feature:
BLAST of NO13G01490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_009633165.12.200e-2856.78iron-sulfur cluster assembly accessory protein [Sy... [more]
GAX29132.16.500e-2847.33iron-sulfur cluster assembly protein [Fistulifera ... [more]
WP_106369094.18.500e-2855.08iron-sulfur cluster assembly accessory protein [Ch... [more]
WP_072622061.11.400e-2753.45iron-sulfur cluster assembly accessory protein [Sp... [more]
WP_015194559.12.500e-2756.36iron-sulfur cluster assembly accessory protein [St... [more]
CEM08917.12.500e-2744.51unnamed protein product [Vitrella brassicaformis C... [more]
GAQ89196.12.500e-2750.77Iron-sulphur cluster biosynthesis family protein [... [more]
XP_002949272.14.200e-2754.17iron-sulfur cluster assembly protein [Volvox carte... [more]
WP_015182004.15.500e-2756.64iron-sulfur cluster assembly accessory protein [Mi... [more]
WP_022605156.15.500e-2754.55iron-sulfur cluster assembly accessory protein [Ru... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01490.1NO13G01490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596574gene_6858Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01490.1NO13G01490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01490 ID=NO13G01490|Name=NO13G01490|organism=Nannochloropsis oceanica|type=gene|length=2914bp
ACAACAGAGCGCACAAATGCATCGTCCCTTCGCCTTGTTCTCAGTCGGCC
ATGCGAAGGCCATGTTAATGCTACTCCTTGGCGTCCTAGCCACGACGCAA
GCATTCCTCATCCCCTCGGCGCCCTTCACCTTGTCATCGTCGACGTTGGC
GCCATTGTCTTCAGgtacggttttggccctctatcctgtactgcgaatcg
gaggcttccccgcggcgtttgtcgtctcgctctcctctcctatcctcctt
tgcttgtttttccccacgtggtgtatggtagcattccaggtcttatgaaa
gggcgtgcgcttcccgctgtcgtctctggcagtgtgtgggagagatgggc
gacggcatcgcctgcttgagacacacaaaaggggtcggcgtatttcctct
ccctctgctctttcctccctccatttcttttccctctgtcgattgcagct
catgttatgcttgaatgcgatgtatttgcgagtatgtagacgcagtcact
gggattaattgggagggccaggctagagaaggcggttattcacccactct
ttccaaaacagcagCAGCTGCACACAAGGTGGCAAAGGCCATCGCCACGC
CCAGGACTCAGCGGGGCAAGCTGTTTGCGGATGTAGCAGgcacgttggag
ggggaaagaggggaagggaggaaagtccaaggggaatgccgtggagataa
cgaaacaggaccagcaacaagcaggacggacgactgctgctgctactgct
ctctctctttctttcgttcaggtccttgtctgcgatgaattccgtagatc
taccatattcctttacactttactatctcactctatcttttccacactcc
ttcccactgtccccctccatctctgcagAAAAAAACGAGGGAACCGTCGA
GGTGGCTGAGCGCGTCATCACTGTGTCCGACTCCGCTCTCGAGCATTTGA
AAGACCTTCGCACAAAGCAAGGCGTCGATCACCTTTATCTTAGGATGGGT
GTCCGATCGGGTGGGTGCTCTGGCATGTCGTATGTCTTAGATGTGATGAA
GAAGGAGgtacgtgctctgttgcgtcctattcctccttccttccctcccc
tccctccccctcatttttgtgctgctgctgttgctgttactgacttcaaa
atatatatctttcaaataattgacgacttaaagagtgattggtaatggag
actgaccctcatcccgaacctccctgcctcccttccgtcagGACGTCACG
GAGGAGGACCACATCGAGGCGTACGACGAACACGACTTCTCCTGCGTCGT
CGACCCCAAGAGCCTGTTGTATTTGTTTGGCCTGCGTCTGGACTTTAAGG
ACCAATTGATTGGGGGGGGCTTTGCGTTTCTCAACCCGAATGCCCAGGAG
AGCTGTGGGTGCGGGTCCTCTTTTGGGGTCTAAGGAGGAGGGTTAGTAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGCAGAACACATAGAAGA
AAGGCGAGAGAAGAGAAGCCATGAGGGGGTGACAAGGCATGTACATTGGT
GTGACTTTTCGTCTTATATCGTTACTCAGGACAGGGGAAGTGCCGCTCGC
TTCCCCTCCAAGCAAGCAAACACTAAGAACAAGGACCAAAATGACTTCAA
AACCCGTAACAGAAAAAAGAAGTAGGAAAATAAGTGAGGTGGTCAACAAA
GAAGAGAAATATCCAGCTGTCGTGTGGAAAGATGAATGGCTTCCGGTGCA
CAACACGCAACGCTGTGTCTTCAAGCTTTGTTTGACGACGAAGATGGTTG
TAATTTCTTTTTGGTCACCTCGAATAGGAACAAGTAGACGGGAGAATTGA
GCTCCCTTCTGCCTCTCACCTCAATCTGATCGTTGGGTTTACCTTTCTTT
AGTTCTCCCACTTCCCCTCAGCCTCGTCGGTGTCGTTCTAGGTGGTAGTA
GTGGAAATGATGAGGAGGGAGAGGGAAGGGCGGGAAGAGCAGGGGAGATA
AATGGCTTTTCTTGTTTCACAGGCTTCTTCGTCATCATCTACTTTCCCCT
CCTCTTCACGAATATCTCTCTACTCGCTTTTGTTTTTCCTGGGCGTATTA
TCGCCTTGCGTCAAGCATCTCTTCTACTTTACTGCTGCTTGCTTTTCCTG
CTCTATTCATGAGTACAGTTATACATCAAAATATTACTATAATGCATATA
AATATAATAGAATATCATTCTAATATGTGTATGCATAAAAAAATAAAAAG
TGACCCTGTAAGTGAACGAATTCACGAGACAGGATGAAGGTCTATATCTC
ACAGAAAGGTTCTACCGTCCTCTTCTAAGATGGCGACGAGGCCCCAACAT
ACACATGAATTTTCATGTATTCAATCTCTTTCTCTGTCCATCTCATCCCC
TTGCTCTCTCCCTCCCTCCCTCCCTTCACCCTATTTTGCGTCTAACGGGG
CACACAAGCACACGGGCATTTCTGGATGAATTTCATCACCCTGAAAGTTT
TAGTGTATGTCCGTGTCCATCGCCCTCTCGCTTTCCATTCCTTGGCGGGT
CCTCCATCTATTGATACACAGCCTCGTTCCATCCATTCCTCCCTCCTCGC
TTTCTTCTTTTTACCTATGTCTCTCTACGACGCTCGGTCGTTGTTTGTCG
TCTCCCTCTTTCACTTCGTTGTGAATGTCCTTGTCTCTCGCTTCTACCAT
CTCTTTTTGATCGTTGCTGCCTCTCTGACGCTATTCTTCTTTCCTAGACT
TTCCTCCCCTCGTGGCTGTCCTCCTTCCCACCCCTCCAGCCGCCGGAGCT
GTTCCTGCCTCATTATTCTCCCCCCGTCCCAACTCCTTCCATTTTCTTCT
TGACGACGACGACGACGACGACGATGACGACGACGATGACGATGATGATG
ATGATGATGATGAT
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protein sequence of NO13G01490.1

>NO13G01490.1-protein ID=NO13G01490.1-protein|Name=NO13G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MHRPFALFSVGHAKAMLMLLLGVLATTQAFLIPSAPFTLSSSTLAPLSSA
AAHKVAKAIATPRTQRGKLFADVAEKNEGTVEVAERVITVSDSALEHLKD
LRTKQGVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDF
SCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV*
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Synonyms
Publications