NO13G01490.1, NO13G01490.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G01490.1
Unique Name	NO13G01490.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2091
Alignment location	chr13:445491..448404 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:445491..448404 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO13G01490.1 vs.
Match: EWM21820.1 (iron-sulfur cluster assembly accessory protein [Nannochloropsis gaditana])

HSP 1 Score: 256.1 bits (653), Expect = 8.600e-65
Identity = 133/197 (67.51%), Postives = 155/197 (78.68%), Query Frame = 0

Query:    1 MHRPFALFSVGHAKAMLMLLLGVLATTQAFLIPSAPFTLSSSTLAPLSSAAAHKVAKAIATPRTQRGKLFADVAEKNEGTVEVAERVITVSDSALEHLKDLRTKQGVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            MHRPF L       ++L+ LL +   T  F +P  P +  SS+ + +S  +   V KA+  PR    +L+A+VAEK+EG  +V ERVITVSDSAL+HL+DLR KQGV+HLYLRMGVRSGGCSGMSYVLDVMK E+VTEEDH+E+Y EH FSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV
Sbjct:    1 MHRPFLLQGTVAPISLLLGLLVICTITHGFFVPYLPSSSLSSSASAMSVVSGLSVGKAV--PRLGSSQLWAEVAEKSEGVSDVTERVITVSDSALKHLEDLRAKQGVEHLYLRMGVRSGGCSGMSYVLDVMKPEEVTEEDHVESYSEHHFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 195

The following BLAST results are available for this feature:

BLAST of NO13G01490.1 vs.

BLAST of NO13G01490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21820.1	8.600e-65	67.51	iron-sulfur cluster assembly accessory protein [Na...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO13G01490	NO13G01490	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO13G01490.1	NO13G01490.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO13G01490.1.cds1	NO13G01490.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G01490.1.cds2	NO13G01490.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G01490.1.cds3	NO13G01490.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G01490.1.cds4	NO13G01490.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr13:445491..448404-
coding sequence from alignment at chr13:445491..448404-

mRNA sequence

>NO13G01490.1 ID=NO13G01490.1|Name=NO13G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2091bp
ACAACAGAGCGCACAAATGCATCGTCCCTTCGCCTTGTTCTCAGTCGGCC
ATGCGAAGGCCATGTTAATGCTACTCCTTGGCGTCCTAGCCACGACGCAA
GCATTCCTCATCCCCTCGGCGCCCTTCACCTTGTCATCGTCGACGTTGGC
GCCATTGTCTTCAGCAGCTGCACACAAGGTGGCAAAGGCCATCGCCACGC
CCAGGACTCAGCGGGGCAAGCTGTTTGCGGATGTAGCAGAAAAAAACGAG
GGAACCGTCGAGGTGGCTGAGCGCGTCATCACTGTGTCCGACTCCGCTCT
CGAGCATTTGAAAGACCTTCGCACAAAGCAAGGCGTCGATCACCTTTATC
TTAGGATGGGTGTCCGATCGGGTGGGTGCTCTGGCATGTCGTATGTCTTA
GATGTGATGAAGAAGGAGGACGTCACGGAGGAGGACCACATCGAGGCGTA
CGACGAACACGACTTCTCCTGCGTCGTCGACCCCAAGAGCCTGTTGTATT
TGTTTGGCCTGCGTCTGGACTTTAAGGACCAATTGATTGGGGGGGGCTTT
GCGTTTCTCAACCCGAATGCCCAGGAGAGCTGTGGGTGCGGGTCCTCTTT
TGGGGTCTAAGGAGGAGGGTTAGTAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGAGCAGAACACATAGAAGAAAGGCGAGAGAAGAGAAGCCATG
AGGGGGTGACAAGGCATGTACATTGGTGTGACTTTTCGTCTTATATCGTT
ACTCAGGACAGGGGAAGTGCCGCTCGCTTCCCCTCCAAGCAAGCAAACAC
TAAGAACAAGGACCAAAATGACTTCAAAACCCGTAACAGAAAAAAGAAGT
AGGAAAATAAGTGAGGTGGTCAACAAAGAAGAGAAATATCCAGCTGTCGT
GTGGAAAGATGAATGGCTTCCGGTGCACAACACGCAACGCTGTGTCTTCA
AGCTTTGTTTGACGACGAAGATGGTTGTAATTTCTTTTTGGTCACCTCGA
ATAGGAACAAGTAGACGGGAGAATTGAGCTCCCTTCTGCCTCTCACCTCA
ATCTGATCGTTGGGTTTACCTTTCTTTAGTTCTCCCACTTCCCCTCAGCC
TCGTCGGTGTCGTTCTAGGTGGTAGTAGTGGAAATGATGAGGAGGGAGAG
GGAAGGGCGGGAAGAGCAGGGGAGATAAATGGCTTTTCTTGTTTCACAGG
CTTCTTCGTCATCATCTACTTTCCCCTCCTCTTCACGAATATCTCTCTAC
TCGCTTTTGTTTTTCCTGGGCGTATTATCGCCTTGCGTCAAGCATCTCTT
CTACTTTACTGCTGCTTGCTTTTCCTGCTCTATTCATGAGTACAGTTATA
CATCAAAATATTACTATAATGCATATAAATATAATAGAATATCATTCTAA
TATGTGTATGCATAAAAAAATAAAAAGTGACCCTGTAAGTGAACGAATTC
ACGAGACAGGATGAAGGTCTATATCTCACAGAAAGGTTCTACCGTCCTCT
TCTAAGATGGCGACGAGGCCCCAACATACACATGAATTTTCATGTATTCA
ATCTCTTTCTCTGTCCATCTCATCCCCTTGCTCTCTCCCTCCCTCCCTCC
CTTCACCCTATTTTGCGTCTAACGGGGCACACAAGCACACGGGCATTTCT
GGATGAATTTCATCACCCTGAAAGTTTTAGTGTATGTCCGTGTCCATCGC
CCTCTCGCTTTCCATTCCTTGGCGGGTCCTCCATCTATTGATACACAGCC
TCGTTCCATCCATTCCTCCCTCCTCGCTTTCTTCTTTTTACCTATGTCTC
TCTACGACGCTCGGTCGTTGTTTGTCGTCTCCCTCTTTCACTTCGTTGTG
AATGTCCTTGTCTCTCGCTTCTACCATCTCTTTTTGATCGTTGCTGCCTC
TCTGACGCTATTCTTCTTTCCTAGACTTTCCTCCCCTCGTGGCTGTCCTC
CTTCCCACCCCTCCAGCCGCCGGAGCTGTTCCTGCCTCATTATTCTCCCC
CCGTCCCAACTCCTTCCATTTTCTTCTTGACGACGACGACGACGACGACG
ATGACGACGACGATGACGATGATGATGATGATGATGATGAT

protein sequence of NO13G01490.1

>NO13G01490.1-protein ID=NO13G01490.1-protein|Name=NO13G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MHRPFALFSVGHAKAMLMLLLGVLATTQAFLIPSAPFTLSSSTLAPLSSA
AAHKVAKAIATPRTQRGKLFADVAEKNEGTVEVAERVITVSDSALEHLKD
LRTKQGVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDF
SCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV*

mRNA from alignment at chr13:445491..448404-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO13G01490.1 ID=NO13G01490.1|Name=NO13G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2914bp|location=Sequence derived from alignment at chr13:445491..448404- (Nannochloropsis oceanica)
ACAACAGAGCGCACAAATGCATCGTCCCTTCGCCTTGTTCTCAGTCGGCC
ATGCGAAGGCCATGTTAATGCTACTCCTTGGCGTCCTAGCCACGACGCAA
GCATTCCTCATCCCCTCGGCGCCCTTCACCTTGTCATCGTCGACGTTGGC
GCCATTGTCTTCAGGTACGGTTTTGGCCCTCTATCCTGTACTGCGAATCG
GAGGCTTCCCCGCGGCGTTTGTCGTCTCGCTCTCCTCTCCTATCCTCCTT
TGCTTGTTTTTCCCCACGTGGTGTATGGTAGCATTCCAGGTCTTATGAAA
GGGCGTGCGCTTCCCGCTGTCGTCTCTGGCAGTGTGTGGGAGAGATGGGC
GACGGCATCGCCTGCTTGAGACACACAAAAGGGGTCGGCGTATTTCCTCT
CCCTCTGCTCTTTCCTCCCTCCATTTCTTTTCCCTCTGTCGATTGCAGCT
CATGTTATGCTTGAATGCGATGTATTTGCGAGTATGTAGACGCAGTCACT
GGGATTAATTGGGAGGGCCAGGCTAGAGAAGGCGGTTATTCACCCACTCT
TTCCAAAACAGCAGCAGCTGCACACAAGGTGGCAAAGGCCATCGCCACGC
CCAGGACTCAGCGGGGCAAGCTGTTTGCGGATGTAGCAGGCACGTTGGAG
GGGGAAAGAGGGGAAGGGAGGAAAGTCCAAGGGGAATGCCGTGGAGATAA
CGAAACAGGACCAGCAACAAGCAGGACGGACGACTGCTGCTGCTACTGCT
CTCTCTCTTTCTTTCGTTCAGGTCCTTGTCTGCGATGAATTCCGTAGATC
TACCATATTCCTTTACACTTTACTATCTCACTCTATCTTTTCCACACTCC
TTCCCACTGTCCCCCTCCATCTCTGCAGAAAAAAACGAGGGAACCGTCGA
GGTGGCTGAGCGCGTCATCACTGTGTCCGACTCCGCTCTCGAGCATTTGA
AAGACCTTCGCACAAAGCAAGGCGTCGATCACCTTTATCTTAGGATGGGT
GTCCGATCGGGTGGGTGCTCTGGCATGTCGTATGTCTTAGATGTGATGAA
GAAGGAGGTACGTGCTCTGTTGCGTCCTATTCCTCCTTCCTTCCCTCCCC
TCCCTCCCCCTCATTTTTGTGCTGCTGCTGTTGCTGTTACTGACTTCAAA
ATATATATCTTTCAAATAATTGACGACTTAAAGAGTGATTGGTAATGGAG
ACTGACCCTCATCCCGAACCTCCCTGCCTCCCTTCCGTCAGGACGTCACG
GAGGAGGACCACATCGAGGCGTACGACGAACACGACTTCTCCTGCGTCGT
CGACCCCAAGAGCCTGTTGTATTTGTTTGGCCTGCGTCTGGACTTTAAGG
ACCAATTGATTGGGGGGGGCTTTGCGTTTCTCAACCCGAATGCCCAGGAG
AGCTGTGGGTGCGGGTCCTCTTTTGGGGTCTAAGGAGGAGGGTTAGTAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGCAGAACACATAGAAGA
AAGGCGAGAGAAGAGAAGCCATGAGGGGGTGACAAGGCATGTACATTGGT
GTGACTTTTCGTCTTATATCGTTACTCAGGACAGGGGAAGTGCCGCTCGC
TTCCCCTCCAAGCAAGCAAACACTAAGAACAAGGACCAAAATGACTTCAA
AACCCGTAACAGAAAAAAGAAGTAGGAAAATAAGTGAGGTGGTCAACAAA
GAAGAGAAATATCCAGCTGTCGTGTGGAAAGATGAATGGCTTCCGGTGCA
CAACACGCAACGCTGTGTCTTCAAGCTTTGTTTGACGACGAAGATGGTTG
TAATTTCTTTTTGGTCACCTCGAATAGGAACAAGTAGACGGGAGAATTGA
GCTCCCTTCTGCCTCTCACCTCAATCTGATCGTTGGGTTTACCTTTCTTT
AGTTCTCCCACTTCCCCTCAGCCTCGTCGGTGTCGTTCTAGGTGGTAGTA
GTGGAAATGATGAGGAGGGAGAGGGAAGGGCGGGAAGAGCAGGGGAGATA
AATGGCTTTTCTTGTTTCACAGGCTTCTTCGTCATCATCTACTTTCCCCT
CCTCTTCACGAATATCTCTCTACTCGCTTTTGTTTTTCCTGGGCGTATTA
TCGCCTTGCGTCAAGCATCTCTTCTACTTTACTGCTGCTTGCTTTTCCTG
CTCTATTCATGAGTACAGTTATACATCAAAATATTACTATAATGCATATA
AATATAATAGAATATCATTCTAATATGTGTATGCATAAAAAAATAAAAAG
TGACCCTGTAAGTGAACGAATTCACGAGACAGGATGAAGGTCTATATCTC
ACAGAAAGGTTCTACCGTCCTCTTCTAAGATGGCGACGAGGCCCCAACAT
ACACATGAATTTTCATGTATTCAATCTCTTTCTCTGTCCATCTCATCCCC
TTGCTCTCTCCCTCCCTCCCTCCCTTCACCCTATTTTGCGTCTAACGGGG
CACACAAGCACACGGGCATTTCTGGATGAATTTCATCACCCTGAAAGTTT
TAGTGTATGTCCGTGTCCATCGCCCTCTCGCTTTCCATTCCTTGGCGGGT
CCTCCATCTATTGATACACAGCCTCGTTCCATCCATTCCTCCCTCCTCGC
TTTCTTCTTTTTACCTATGTCTCTCTACGACGCTCGGTCGTTGTTTGTCG
TCTCCCTCTTTCACTTCGTTGTGAATGTCCTTGTCTCTCGCTTCTACCAT
CTCTTTTTGATCGTTGCTGCCTCTCTGACGCTATTCTTCTTTCCTAGACT
TTCCTCCCCTCGTGGCTGTCCTCCTTCCCACCCCTCCAGCCGCCGGAGCT
GTTCCTGCCTCATTATTCTCCCCCCGTCCCAACTCCTTCCATTTTCTTCT
TGACGACGACGACGACGACGACGATGACGACGACGATGACGATGATGATG
ATGATGATGATGAT

Coding sequence (CDS) from alignment at chr13:445491..448404-

>NO13G01490.1 ID=NO13G01490.1|Name=NO13G01490.1|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at chr13:445491..448404- (Nannochloropsis oceanica)
ATGCATCGTCCCTTCGCCTTGTTCTCAGTCGGCCATGCGAAGGCCATGTT
AATGCTACTCCTTGGCGTCCTAGCCACGACGCAAGCATTCCTCATCCCCT
CGGCGCCCTTCACCTTGTCATCGTCGACGTTGGCGCCATTGTCTTCAGCA
GCTGCACACAAGGTGGCAAAGGCCATCGCCACGCCCAGGACTCAGCGGGG
CAAGCTGTTTGCGGATGTAGCAGAAAAAAACGAGGGAACCGTCGAGGTGG
CTGAGCGCGTCATCACTGTGTCCGACTCCGCTCTCGAGCATTTGAAAGAC
CTTCGCACAAAGCAAGGCGTCGATCACCTTTATCTTAGGATGGGTGTCCG
ATCGGGTGGGTGCTCTGGCATGTCGTATGTCTTAGATGTGATGAAGAAGG
AGGACGTCACGGAGGAGGACCACATCGAGGCGTACGACGAACACGACTTC
TCCTGCGTCGTCGACCCCAAGAGCCTGTTGTATTTGTTTGGCCTGCGTCT
GGACTTTAAGGACCAATTGATTGGGGGGGGCTTTGCGTTTCTCAACCCGA
ATGCCCAGGAGAGCTGTGGGTGCGGGTCCTCTTTTGGGGTCTAA

Synonyms

Publications