NO13G01490, NO13G01490 (gene) Nannochloropsis oceanica

Overview
NameNO13G01490
Unique NameNO13G01490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2914
Alignment locationchr13:445491..448404 -

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Properties
Property NameValue
DescriptionIron-sulfur cluster assembly accessory protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:445491..448404 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035903HesB-like_dom_sf
IPR000361FeS_biogenesis
Homology
BLAST of NO13G01490 vs. NCBI_GenBank
Match: EWM21820.1 (iron-sulfur cluster assembly accessory protein [Nannochloropsis gaditana])

HSP 1 Score: 256.1 bits (653), Expect = 8.600e-65
Identity = 133/197 (67.51%), Postives = 155/197 (78.68%), Query Frame = 0
Query:    1 MHRPFALFSVGHAKAMLMLLLGVLATTQAFLIPSAPFTLSSSTLAPLSSAAAHKVAKAIATPRTQRGKLFADVAEKNEGTVEVAERVITVSDSALEHLKDLRTKQGVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            MHRPF L       ++L+ LL +   T  F +P  P +  SS+ + +S  +   V KA+  PR    +L+A+VAEK+EG  +V ERVITVSDSAL+HL+DLR KQGV+HLYLRMGVRSGGCSGMSYVLDVMK E+VTEEDH+E+Y EH FSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV
Sbjct:    1 MHRPFLLQGTVAPISLLLGLLVICTITHGFFVPYLPSSSLSSSASAMSVVSGLSVGKAV--PRLGSSQLWAEVAEKSEGVSDVTERVITVSDSALKHLEDLRAKQGVEHLYLRMGVRSGGCSGMSYVLDVMKPEEVTEEDHVESYSEHHFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 195          
BLAST of NO13G01490 vs. NCBI_GenBank
Match: XP_005853547.1 (iron-sulfur cluster assembly accessory protein [Nannochloropsis gaditana CCMP526] >EKU22816.1 iron-sulfur cluster assembly accessory protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 231.5 bits (589), Expect = 2.300e-57
Identity = 124/197 (62.94%), Postives = 146/197 (74.11%), Query Frame = 0
Query:    1 MHRPFALFSVGHAKAMLMLLLGVLATTQAFLIPSAPFTLSSSTLAPLSSAAAHKVAKAIATPRTQRGKLFADVAEKNEGTVEVAERVITVSDSALEHLKDLRTKQGVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            MHRPF L       ++L+ LL +   T  F +P  P +  SS+ + +S  +   V KA+  PR    +L+A+VAEK+EG  +V ERVITVSDSAL+HL+DLR KQGV+HLYLRMGVRS G  G      VMK E+VTEEDH+E+Y EH FSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV
Sbjct:    1 MHRPFLLQGTVAPISLLLGLLVICTITHGFFVPYLPSSSLSSSASAMSVVSGLSVGKAV--PRLGSSQLWAEVAEKSEGVSDVTERVITVSDSALKHLEDLRAKQGVEHLYLRMGVRSRGLLGHELRPGVMKPEEVTEEDHVESYSEHHFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 195          
BLAST of NO13G01490 vs. NCBI_GenBank
Match: CBJ29104.1 (iron-sulfur assembly protein [Ectocarpus siliculosus])

HSP 1 Score: 158.3 bits (399), Expect = 2.500e-35
Identity = 70/117 (59.83%), Postives = 94/117 (80.34%), Query Frame = 0
Query:   82 EVAERVITVSDSALEHLKDLRTKQGVD-HLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            EV E+++ +   A++HL++LR  QG +  ++LRMGVRSGGCSG+SY++D++KKE++TE+D +E YD   F CV+DPKS+LYL+GL LDF D LIGGGF F NPNA+ SCGCG SFGV
Sbjct:   61 EVMEKIVNIRPKAMDHLQELRRSQGTEGDIFLRMGVRSGGCSGLSYIMDLVKKEEITEDDMVEEYD--GFKCVIDPKSVLYLYGLELDFSDALIGGGFQFQNPNAESSCGCGKSFGV 175          
BLAST of NO13G01490 vs. NCBI_GenBank
Match: OEU15275.1 (hypothetical protein FRACYDRAFT_218226 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 146.0 bits (367), Expect = 1.300e-31
Identity = 65/113 (57.52%), Postives = 85/113 (75.22%), Query Frame = 0
Query:   85 ERVITVSDSALEHLKDLRTKQGVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            + VI +   A++ L++LR KQ  D L LRMGVR+GGCSG+SY++D   ++DV E+D I+ Y      CVVD KS+LYL+GL LDF ++LIGGGF F NPNA++SCGCGSSFGV
Sbjct:   39 DAVINIKPKAMKRLRELREKQKTDSLVLRMGVRNGGCSGLSYIMDFATEDDVQEDDAIDEYPGEKLKCVVDAKSMLYLYGLELDFSEELIGGGFKFFNPNAEDSCGCGSSFGV 151          
BLAST of NO13G01490 vs. NCBI_GenBank
Match: XP_005775416.1 (iron-sulfur cluster assembly accessory protein, HesB/YadR/YfhF [Emiliania huxleyi CCMP1516] >EOD22987.1 iron-sulfur cluster assembly accessory protein, HesB/YadR/YfhF [Emiliania huxleyi CCMP1516])

HSP 1 Score: 139.8 bits (351), Expect = 9.000e-30
Identity = 75/184 (40.76%), Postives = 113/184 (61.41%), Query Frame = 0
Query:   14 KAMLMLLLGVLATTQAFLIPSAPFTLSSSTLAPLSSAAAHKVAKAIATPRTQRGKLFADVAEKNEGTVEVAERVITVSDSALEHLKDLRTKQGVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            + +L++L   L    ++L P  P  L+ + LA +SS  A       A               + +G     + +I+ S+ AL  +++LR K G +   LRMGVR+GGCSGMSYV+D M++ ++ E+D    Y++    CV+DPKSL++L+GL+LD+ D+LIGGGF+F NPNA+E+CGCG SFGV
Sbjct:    2 RLILLVLFASLRAASSYLAP-PPAALTRTRLAVVSSGGAETALPVRARALLCARPTLLRACPRLDGGA-AQDSIISFSERALTQIQELREKSGKERACLRMGVRAGGCSGMSYVMDFMEEGEIDEKDTTIDYEQGTIRCVIDPKSLMFLYGLQLDYSDELIGGGFSFANPNAEETCGCGKSFGV 183          
BLAST of NO13G01490 vs. NCBI_GenBank
Match: EJK48037.1 (hypothetical protein THAOC_33202 [Thalassiosira oceanica])

HSP 1 Score: 139.4 bits (350), Expect = 1.200e-29
Identity = 63/115 (54.78%), Postives = 84/115 (73.04%), Query Frame = 0
Query:   85 ERVITVSDSALEHLKDLRTKQG--VDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            + +I + + A++ L +L+ KQ      L LRMGVR+GGCSG+SYV+D   +E++ +ED ++ Y +    CVVD KSLLYL+GL LD+ D LIGGGF F NPNA+ESCGCGSSFGV
Sbjct:   67 DAIIMIKEKAMDRLVELKQKQADPSSPLILRMGVRNGGCSGLSYVMDFSTEEEIQDEDEVDDYSQEGIKCVVDAKSLLYLYGLELDYSDDLIGGGFKFFNPNAEESCGCGSSFGV 181          
BLAST of NO13G01490 vs. NCBI_GenBank
Match: PSC67830.1 (iron-sulfur cluster assembly [Micractinium conductrix] >PSC67855.1 iron-sulfur cluster assembly [Micractinium conductrix] >PSC71899.1 iron-sulfur cluster assembly [Micractinium conductrix])

HSP 1 Score: 139.0 bits (349), Expect = 1.500e-29
Identity = 78/150 (52.00%), Postives = 95/150 (63.33%), Query Frame = 0
Query:   51 AAHKVAKAIATP---RTQRGKLFADVAEKNEGTVEVAERVITVSDSALEHLKDLRTKQGVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            AA + A A+ T    R  R  L    A   EG V+     IT++D ALEHL  LR+  G + L LRMGV+SGGCSGMSYV+D   +E++  +D +  Y E  F  V DPKSLLYLFG+ LD+   LIGGGF F NPNA +SCGCG SFGV
Sbjct:   12 AAQRPATALRTRSAFRPARPLLLKLRAAAVEGAVKPLAPAITLTDRALEHLTKLRSDSGGEKLLLRMGVKSGGCSGMSYVMDFESEENIKPDDAVMEY-EGGFKLVTDPKSLLYLFGMHLDWSPALIGGGFQFQNPNAADSCGCGKSFGV 160          
BLAST of NO13G01490 vs. NCBI_GenBank
Match: GAX16544.1 (iron-sulfur cluster assembly protein [Fistulifera solaris])

HSP 1 Score: 136.3 bits (342), Expect = 1.000e-28
Identity = 70/143 (48.95%), Postives = 95/143 (66.43%), Query Frame = 0
Query:   62 PRTQRGKLFADVAEKNEGTVEV---AERVITVSDSALEHLKDLR---TKQGV-DHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            P   R  L+AD  E    T++     + V+ +  +A++ L++LR    K  V D L LRMGV+SGGCSGMSYV+D   ++ + E+D ++ Y +    CVVD KS+LYL+GL LD+  +LIGGGF F NPNA+ESCGCGSSFGV
Sbjct:   26 PLPFRTTLYADTTEAPPLTIDYEIPEDAVVMIKPAAMKRLRELRQTELKDPVNDTLILRMGVQSGGCSGMSYVMDFSSEDSIQEDDVVDEYADEKVKCVVDAKSMLYLYGLELDYSTELIGGGFKFFNPNAEESCGCGSSFGV 168          
BLAST of NO13G01490 vs. NCBI_GenBank
Match: PRW59324.1 (Iron-sulfur cluster assembly accessory [Chlorella sorokiniana])

HSP 1 Score: 136.0 bits (341), Expect = 1.300e-28
Identity = 65/112 (58.04%), Postives = 86/112 (76.79%), Query Frame = 0
Query:   88 ITVSDSALEHLKDLRTKQGVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAY--DEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            IT++ +ALEHL+ LR + G D L LRMGV+SGGCSGMSYV+D  K+E+V ++D + ++  +  +F  V DPKSLLYLFG++LD+   L+GGGF F NPNA+ SCGCG SFGV
Sbjct:   58 ITLTPAALEHLQKLRRESGGDGLLLRMGVKSGGCSGMSYVMDFEKQENVKKDDLVMSFECEGGEFRLVCDPKSLLYLFGMQLDWSSALVGGGFQFNNPNAESSCGCGKSFGV 169          
BLAST of NO13G01490 vs. NCBI_GenBank
Match: XP_005646925.1 (FeS cluster assembly accessory/regulatory protein [Coccomyxa subellipsoidea C-169] >EIE22381.1 FeS cluster assembly accessory/regulatory protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 135.6 bits (340), Expect = 1.700e-28
Identity = 69/118 (58.47%), Postives = 85/118 (72.03%), Query Frame = 0
Query:   80 TVEVAERVITVSDSALEHLKDLRTKQGVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 198
            TV  A   IT++++AL++LK LR   G + + LRMGV+SGGCSGMSY +D  K+E+V  ED +  Y E  F  V DPKSLLYLFG+RLD+   LIGGGF F NPNA+ SCGCG SFGV
Sbjct:   12 TVAPAPPAITLTEAALKNLKRLREDTGDEKVILRMGVKSGGCSGMSYHMDFEKEENVRAEDAVMEY-EDGFKLVCDPKSLLYLFGMRLDYSAALIGGGFQFHNPNAESSCGCGKSFGV 128          
The following BLAST results are available for this feature:
BLAST of NO13G01490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21820.18.600e-6567.51iron-sulfur cluster assembly accessory protein [Na... [more]
XP_005853547.12.300e-5762.94iron-sulfur cluster assembly accessory protein [Na... [more]
CBJ29104.12.500e-3559.83iron-sulfur assembly protein [Ectocarpus siliculos... [more]
OEU15275.11.300e-3157.52hypothetical protein FRACYDRAFT_218226 [Fragilario... [more]
XP_005775416.19.000e-3040.76iron-sulfur cluster assembly accessory protein, He... [more]
EJK48037.11.200e-2954.78hypothetical protein THAOC_33202 [Thalassiosira oc... [more]
PSC67830.11.500e-2952.00iron-sulfur cluster assembly [Micractinium conduct... [more]
GAX16544.11.000e-2848.95iron-sulfur cluster assembly protein [Fistulifera ... [more]
PRW59324.11.300e-2858.04Iron-sulfur cluster assembly accessory [Chlorella ... [more]
XP_005646925.11.700e-2858.47FeS cluster assembly accessory/regulatory protein ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01490.1NO13G01490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596574gene_6858Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01490.1NO13G01490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01490 ID=NO13G01490|Name=NO13G01490|organism=Nannochloropsis oceanica|type=gene|length=2914bp
ACAACAGAGCGCACAAATGCATCGTCCCTTCGCCTTGTTCTCAGTCGGCC
ATGCGAAGGCCATGTTAATGCTACTCCTTGGCGTCCTAGCCACGACGCAA
GCATTCCTCATCCCCTCGGCGCCCTTCACCTTGTCATCGTCGACGTTGGC
GCCATTGTCTTCAGgtacggttttggccctctatcctgtactgcgaatcg
gaggcttccccgcggcgtttgtcgtctcgctctcctctcctatcctcctt
tgcttgtttttccccacgtggtgtatggtagcattccaggtcttatgaaa
gggcgtgcgcttcccgctgtcgtctctggcagtgtgtgggagagatgggc
gacggcatcgcctgcttgagacacacaaaaggggtcggcgtatttcctct
ccctctgctctttcctccctccatttcttttccctctgtcgattgcagct
catgttatgcttgaatgcgatgtatttgcgagtatgtagacgcagtcact
gggattaattgggagggccaggctagagaaggcggttattcacccactct
ttccaaaacagcagCAGCTGCACACAAGGTGGCAAAGGCCATCGCCACGC
CCAGGACTCAGCGGGGCAAGCTGTTTGCGGATGTAGCAGgcacgttggag
ggggaaagaggggaagggaggaaagtccaaggggaatgccgtggagataa
cgaaacaggaccagcaacaagcaggacggacgactgctgctgctactgct
ctctctctttctttcgttcaggtccttgtctgcgatgaattccgtagatc
taccatattcctttacactttactatctcactctatcttttccacactcc
ttcccactgtccccctccatctctgcagAAAAAAACGAGGGAACCGTCGA
GGTGGCTGAGCGCGTCATCACTGTGTCCGACTCCGCTCTCGAGCATTTGA
AAGACCTTCGCACAAAGCAAGGCGTCGATCACCTTTATCTTAGGATGGGT
GTCCGATCGGGTGGGTGCTCTGGCATGTCGTATGTCTTAGATGTGATGAA
GAAGGAGgtacgtgctctgttgcgtcctattcctccttccttccctcccc
tccctccccctcatttttgtgctgctgctgttgctgttactgacttcaaa
atatatatctttcaaataattgacgacttaaagagtgattggtaatggag
actgaccctcatcccgaacctccctgcctcccttccgtcagGACGTCACG
GAGGAGGACCACATCGAGGCGTACGACGAACACGACTTCTCCTGCGTCGT
CGACCCCAAGAGCCTGTTGTATTTGTTTGGCCTGCGTCTGGACTTTAAGG
ACCAATTGATTGGGGGGGGCTTTGCGTTTCTCAACCCGAATGCCCAGGAG
AGCTGTGGGTGCGGGTCCTCTTTTGGGGTCTAAGGAGGAGGGTTAGTAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGCAGAACACATAGAAGA
AAGGCGAGAGAAGAGAAGCCATGAGGGGGTGACAAGGCATGTACATTGGT
GTGACTTTTCGTCTTATATCGTTACTCAGGACAGGGGAAGTGCCGCTCGC
TTCCCCTCCAAGCAAGCAAACACTAAGAACAAGGACCAAAATGACTTCAA
AACCCGTAACAGAAAAAAGAAGTAGGAAAATAAGTGAGGTGGTCAACAAA
GAAGAGAAATATCCAGCTGTCGTGTGGAAAGATGAATGGCTTCCGGTGCA
CAACACGCAACGCTGTGTCTTCAAGCTTTGTTTGACGACGAAGATGGTTG
TAATTTCTTTTTGGTCACCTCGAATAGGAACAAGTAGACGGGAGAATTGA
GCTCCCTTCTGCCTCTCACCTCAATCTGATCGTTGGGTTTACCTTTCTTT
AGTTCTCCCACTTCCCCTCAGCCTCGTCGGTGTCGTTCTAGGTGGTAGTA
GTGGAAATGATGAGGAGGGAGAGGGAAGGGCGGGAAGAGCAGGGGAGATA
AATGGCTTTTCTTGTTTCACAGGCTTCTTCGTCATCATCTACTTTCCCCT
CCTCTTCACGAATATCTCTCTACTCGCTTTTGTTTTTCCTGGGCGTATTA
TCGCCTTGCGTCAAGCATCTCTTCTACTTTACTGCTGCTTGCTTTTCCTG
CTCTATTCATGAGTACAGTTATACATCAAAATATTACTATAATGCATATA
AATATAATAGAATATCATTCTAATATGTGTATGCATAAAAAAATAAAAAG
TGACCCTGTAAGTGAACGAATTCACGAGACAGGATGAAGGTCTATATCTC
ACAGAAAGGTTCTACCGTCCTCTTCTAAGATGGCGACGAGGCCCCAACAT
ACACATGAATTTTCATGTATTCAATCTCTTTCTCTGTCCATCTCATCCCC
TTGCTCTCTCCCTCCCTCCCTCCCTTCACCCTATTTTGCGTCTAACGGGG
CACACAAGCACACGGGCATTTCTGGATGAATTTCATCACCCTGAAAGTTT
TAGTGTATGTCCGTGTCCATCGCCCTCTCGCTTTCCATTCCTTGGCGGGT
CCTCCATCTATTGATACACAGCCTCGTTCCATCCATTCCTCCCTCCTCGC
TTTCTTCTTTTTACCTATGTCTCTCTACGACGCTCGGTCGTTGTTTGTCG
TCTCCCTCTTTCACTTCGTTGTGAATGTCCTTGTCTCTCGCTTCTACCAT
CTCTTTTTGATCGTTGCTGCCTCTCTGACGCTATTCTTCTTTCCTAGACT
TTCCTCCCCTCGTGGCTGTCCTCCTTCCCACCCCTCCAGCCGCCGGAGCT
GTTCCTGCCTCATTATTCTCCCCCCGTCCCAACTCCTTCCATTTTCTTCT
TGACGACGACGACGACGACGACGATGACGACGACGATGACGATGATGATG
ATGATGATGATGAT
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protein sequence of NO13G01490.1

>NO13G01490.1-protein ID=NO13G01490.1-protein|Name=NO13G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MHRPFALFSVGHAKAMLMLLLGVLATTQAFLIPSAPFTLSSSTLAPLSSA
AAHKVAKAIATPRTQRGKLFADVAEKNEGTVEVAERVITVSDSALEHLKD
LRTKQGVDHLYLRMGVRSGGCSGMSYVLDVMKKEDVTEEDHIEAYDEHDF
SCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV*
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Synonyms
Publications