NO13G01240, NO13G01240 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G01240 vs. NCBI_GenBank
Match: EWM21784.1 (dna-binding protein rhl1 [Nannochloropsis gaditana]) HSP 1 Score: 264.6 bits (675), Expect = 6.400e-67 Identity = 124/185 (67.03%), Postives = 148/185 (80.00%), Query Frame = 0 Query: 4 KKSQEEKDTAVTALRASELRIGHVLTRKSITTSIPSSVPSSLRAKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAFEGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASLNFQIEGLTAEEMYVRGGKWGG 189 K S+ + D A+ LR +E R+ HVLT+K + VPSS+R KDL+ W+GCDIVRKG +KTRYVFLLPA +++TQAGGK+GT+A MDTETPVLYLDFPQGRM+CQGRIVRPEVRLLPLAFEGK+SVTCKD+VNTLVVFS++ W+GT KENPEEKPWP P +NFQ+EG A E K GG Sbjct: 8 KASKADDDPALVELRDAEARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFEGKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGG 192
BLAST of NO13G01240 vs. NCBI_GenBank
Match: EFJ28076.1 (hypothetical protein SELMODRAFT_411583 [Selaginella moellendorffii]) HSP 1 Score: 120.9 bits (302), Expect = 1.100e-23 Identity = 65/154 (42.21%), Postives = 95/154 (61.69%), Query Frame = 0 Query: 16 ALRASELRIGHVLTRKSITTSIPSSVPS-SLRAKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAF-EGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASL 168 A++ R+ + + I +S P L +K+L +G DIV+KG RK++++F P L AGGK G LA +DT+ P+LY+DFP+GR++ G IV P+ + L L +G +SV C D++ +LVVFSE W+GT +ENPEEK MP L Sbjct: 13 AIQQESARLRNAAISRGILGRSAASPPQLLLPSKELLKCDGKDIVKKGTRKSKFLFSFP-GLVAPVAGGKFGDLAHLDTKNPILYVDFPKGRIKLFGTIVYPKNKYLTLQLTKGSKSVICDDVIESLVVFSESWWIGTKEENPEEKKLDMPKDL 165
BLAST of NO13G01240 vs. NCBI_GenBank
Match: XP_024531560.1 (DNA-binding protein RHL1 [Selaginella moellendorffii]) HSP 1 Score: 120.9 bits (302), Expect = 1.100e-23 Identity = 65/154 (42.21%), Postives = 95/154 (61.69%), Query Frame = 0 Query: 16 ALRASELRIGHVLTRKSITTSIPSSVPS-SLRAKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAF-EGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASL 168 A++ R+ + + I +S P L +K+L +G DIV+KG RK++++F P L AGGK G LA +DT+ P+LY+DFP+GR++ G IV P+ + L L +G +SV C D++ +LVVFSE W+GT +ENPEEK MP L Sbjct: 13 AIQQESARLRNAAISRGILGRSAASPPQLLLPSKELLKCDGKDIVKKGTRKSKFLFSFP-GLVAPVAGGKFGDLAHLDTKNPILYVDFPKGRIKLFGTIVYPKNKYLTLQLTKGSKSVICDDVIESLVVFSESWWIGTKEENPEEKKLDMPKDL 165
BLAST of NO13G01240 vs. NCBI_GenBank
Match: EFJ29501.1 (hypothetical protein SELMODRAFT_410468 [Selaginella moellendorffii]) HSP 1 Score: 120.6 bits (301), Expect = 1.500e-23 Identity = 63/141 (44.68%), Postives = 90/141 (63.83%), Query Frame = 0 Query: 28 LTRKSITTSIPSSVPSSLRAKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAF-EGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASL 168 ++R + S S L +K+L +G DIV+KG RK++++F P L AGGK G LA +DT+ P+LY+DFP+GR++ G IV P+ + L L +G +SV C D++ +LVVFSE W+GT +ENPEEK MP L Sbjct: 26 ISRGLLGRSAASPPQLLLPSKELLKCDGKDIVKKGTRKSKFLFSFP-GLVAPVAGGKFGDLAHLDTKNPILYVDFPKGRIKLFGTIVYPKNKYLTLQLTKGSKSVICDDVIESLVVFSESWWIGTKEENPEEKKLDMPKDL 165
BLAST of NO13G01240 vs. NCBI_GenBank
Match: XP_024530015.1 (DNA-binding protein RHL1 [Selaginella moellendorffii] >XP_024530016.1 DNA-binding protein RHL1 [Selaginella moellendorffii]) HSP 1 Score: 120.6 bits (301), Expect = 1.500e-23 Identity = 63/141 (44.68%), Postives = 90/141 (63.83%), Query Frame = 0 Query: 28 LTRKSITTSIPSSVPSSLRAKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAF-EGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASL 168 ++R + S S L +K+L +G DIV+KG RK++++F P L AGGK G LA +DT+ P+LY+DFP+GR++ G IV P+ + L L +G +SV C D++ +LVVFSE W+GT +ENPEEK MP L Sbjct: 26 ISRGLLGRSAASPPQLLLPSKELLKCDGKDIVKKGTRKSKFLFSFP-GLVAPVAGGKFGDLAHLDTKNPILYVDFPKGRIKLFGTIVYPKNKYLTLQLTKGSKSVICDDVIESLVVFSESWWIGTKEENPEEKKLDMPKDL 165
BLAST of NO13G01240 vs. NCBI_GenBank
Match: OAE27237.1 (hypothetical protein AXG93_473s1080 [Marchantia polymorpha subsp. ruderalis] >PTQ34459.1 hypothetical protein MARPO_0080s0074 [Marchantia polymorpha]) HSP 1 Score: 119.8 bits (299), Expect = 2.600e-23 Identity = 65/163 (39.88%), Postives = 94/163 (57.67%), Query Frame = 0 Query: 6 SQEEKDTAVTALRASELRIGHVLTRKSITTSIPSSVPSSLRAKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAF-EGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASL 168 S EE+ A+ + R EL + L +S + VP+ K ++ NG DIV+KG RKT+Y+F P L +GGK G L +D+ P+LY+DFP GR++ G IV P+ + L + F G+ + C+D +LVVF E W+GT +ENPEE P P+ L Sbjct: 12 SAEEQLLALESKRLKELAVSRGLLARSKANAPAPLVPT----KTIRKCNGKDIVKKGNRKTKYLFAFP-GLVAPVSGGKFGDLTHLDSRNPILYVDFPHGRLKLFGTIVYPKNKYLTMHFVPGRGDIVCEDYFESLVVFPESWWIGTKEENPEELRLPFPSDL 169
BLAST of NO13G01240 vs. NCBI_GenBank
Match: XP_009107361.1 (PREDICTED: DNA-binding protein RHL1 [Brassica rapa]) HSP 1 Score: 118.2 bits (295), Expect = 7.400e-23 Identity = 65/149 (43.62%), Postives = 90/149 (60.40%), Query Frame = 0 Query: 38 PSSVPSSLR-AKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAF-EGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASLNFQIEGLTAEEMYVRGG 185 PS SSL+ +K + +GCDI+RK RK R++F P L+ +G +G L ++ T+ PVLYL+FPQGRM+ G I+ P+ R L L F G ++V C D + ++VFSE W+GT +ENPEE P L+ Q E EE RGG Sbjct: 38 PSRCLSSLKPSKQVLKHHGCDIIRKSQRKNRFLFSFPGLLA-PVSGATIGDLDRLSTKNPVLYLNFPQGRMKLFGTILYPKNRYLTLQFSRGGKNVLCDDYFDNMIVFSESWWIGTKEENPEEARLDFPKELSPQAE--KTEEFDFRGG 183
BLAST of NO13G01240 vs. NCBI_GenBank
Match: CDY41834.1 (BnaA08g03290D [Brassica napus]) HSP 1 Score: 117.5 bits (293), Expect = 1.300e-22 Identity = 65/149 (43.62%), Postives = 89/149 (59.73%), Query Frame = 0 Query: 38 PSSVPSSLR-AKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAF-EGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASLNFQIEGLTAEEMYVRGG 185 PS SSL +K + +GCDI+RK RK R++F P L+ +G +G L ++ T+ PVLYL+FPQGRM+ G I+ P+ R L L F G ++V C D + ++VFSE W+GT +ENPEE P L+ Q E EE RGG Sbjct: 38 PSRCLSSLEPSKQVLKHHGCDIIRKSQRKNRFLFSFPGLLA-PVSGATIGDLDRLSTKNPVLYLNFPQGRMKLFGTILYPKNRYLTLQFSRGGKNVLCDDYFDNMIVFSESWWIGTKEENPEEARLDFPKELSPQAE--KTEEFDFRGG 183
BLAST of NO13G01240 vs. NCBI_GenBank
Match: XP_013655605.1 (DNA-binding protein RHL1-like [Brassica napus]) HSP 1 Score: 117.5 bits (293), Expect = 1.300e-22 Identity = 65/149 (43.62%), Postives = 89/149 (59.73%), Query Frame = 0 Query: 38 PSSVPSSLR-AKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAF-EGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASLNFQIEGLTAEEMYVRGG 185 PS SSL +K + +GCDI+RK RK R++F P L+ +G +G L ++ T+ PVLYL+FPQGRM+ G I+ P+ R L L F G ++V C D + ++VFSE W+GT +ENPEE P L+ Q E EE RGG Sbjct: 38 PSRCLSSLEPSKQVLKHHGCDIIRKSQRKNRFLFSFPGLLA-PVSGATIGDLDRLSTKNPVLYLNFPQGRMKLFGTILYPKNRYLTLQFSRGGKNVLCDDYFDNMIVFSESWWIGTKEENPEEARLDFPKELSPQAE--KTEEFDFRGG 183
BLAST of NO13G01240 vs. NCBI_GenBank
Match: XP_024027802.1 (LOW QUALITY PROTEIN: DNA-binding protein RHL1 [Morus notabilis]) HSP 1 Score: 116.7 bits (291), Expect = 2.200e-22 Identity = 70/164 (42.68%), Postives = 99/164 (60.37%), Query Frame = 0 Query: 26 HVLTRKSITTSIPSSVPSSLRAKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAF-EGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASLNFQIEGLTAEEMYVRGGKWGG 189 ++L++ T P S PS + AK +G DIV++ RK +++F P L+ AGGK+G L + T+ PVLYLDFPQGRM+ G IV P+ R L L F G +SVTC+D + ++VFS+ W+G+A ENPEE P L+ +G AE + +GG GG Sbjct: 41 NILSQTHAKTLSPLS-PSKMVAKH----HGKDIVKRSQRKNKFLFSFPGLLA-PVAGGKIGELKDLGTKNPVLYLDFPQGRMKLFGTIVYPQNRYLTLQFPRGXKSVTCEDYFDNMIVFSDAWWIGSAAENPEEARLDFPKELS---DGQHAEYDF-KGGAGGG 194 The following BLAST results are available for this feature:
BLAST of NO13G01240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G01240 ID=NO13G01240|Name=NO13G01240|organism=Nannochloropsis oceanica|type=gene|length=1572bpback to top protein sequence of NO13G01240.1 >NO13G01240.1-protein ID=NO13G01240.1-protein|Name=NO13G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=524bpback to top Synonyms
Publications
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