NO13G01240, NO13G01240 (gene) Nannochloropsis oceanica

Overview
NameNO13G01240
Unique NameNO13G01240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1572
Alignment locationchr13:376801..378372 +

Link to JBrowse

Properties
Property NameValue
DescriptionDna-binding protein rhl1
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:376801..378372 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0007049cell cycle
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
BLAST of NO13G01240 vs. NCBI_GenBank
Match: EWM21784.1 (dna-binding protein rhl1 [Nannochloropsis gaditana])

HSP 1 Score: 264.6 bits (675), Expect = 6.400e-67
Identity = 124/185 (67.03%), Postives = 148/185 (80.00%), Query Frame = 0
Query:    4 KKSQEEKDTAVTALRASELRIGHVLTRKSITTSIPSSVPSSLRAKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAFEGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASLNFQIEGLTAEEMYVRGGKWGG 189
            K S+ + D A+  LR +E R+ HVLT+K +       VPSS+R KDL+ W+GCDIVRKG +KTRYVFLLPA +++TQAGGK+GT+A MDTETPVLYLDFPQGRM+CQGRIVRPEVRLLPLAFEGK+SVTCKD+VNTLVVFS++ W+GT KENPEEKPWP P  +NFQ+EG  A E      K GG
Sbjct:    8 KASKADDDPALVELRDAEARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFEGKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGEALGGTRKEGG 192          
BLAST of NO13G01240 vs. NCBI_GenBank
Match: EFJ28076.1 (hypothetical protein SELMODRAFT_411583 [Selaginella moellendorffii])

HSP 1 Score: 120.9 bits (302), Expect = 1.100e-23
Identity = 65/154 (42.21%), Postives = 95/154 (61.69%), Query Frame = 0
Query:   16 ALRASELRIGHVLTRKSITTSIPSSVPS-SLRAKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAF-EGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASL 168
            A++    R+ +    + I     +S P   L +K+L   +G DIV+KG RK++++F  P  L    AGGK G LA +DT+ P+LY+DFP+GR++  G IV P+ + L L   +G +SV C D++ +LVVFSE  W+GT +ENPEEK   MP  L
Sbjct:   13 AIQQESARLRNAAISRGILGRSAASPPQLLLPSKELLKCDGKDIVKKGTRKSKFLFSFP-GLVAPVAGGKFGDLAHLDTKNPILYVDFPKGRIKLFGTIVYPKNKYLTLQLTKGSKSVICDDVIESLVVFSESWWIGTKEENPEEKKLDMPKDL 165          
BLAST of NO13G01240 vs. NCBI_GenBank
Match: XP_024531560.1 (DNA-binding protein RHL1 [Selaginella moellendorffii])

HSP 1 Score: 120.9 bits (302), Expect = 1.100e-23
Identity = 65/154 (42.21%), Postives = 95/154 (61.69%), Query Frame = 0
Query:   16 ALRASELRIGHVLTRKSITTSIPSSVPS-SLRAKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAF-EGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASL 168
            A++    R+ +    + I     +S P   L +K+L   +G DIV+KG RK++++F  P  L    AGGK G LA +DT+ P+LY+DFP+GR++  G IV P+ + L L   +G +SV C D++ +LVVFSE  W+GT +ENPEEK   MP  L
Sbjct:   13 AIQQESARLRNAAISRGILGRSAASPPQLLLPSKELLKCDGKDIVKKGTRKSKFLFSFP-GLVAPVAGGKFGDLAHLDTKNPILYVDFPKGRIKLFGTIVYPKNKYLTLQLTKGSKSVICDDVIESLVVFSESWWIGTKEENPEEKKLDMPKDL 165          
BLAST of NO13G01240 vs. NCBI_GenBank
Match: EFJ29501.1 (hypothetical protein SELMODRAFT_410468 [Selaginella moellendorffii])

HSP 1 Score: 120.6 bits (301), Expect = 1.500e-23
Identity = 63/141 (44.68%), Postives = 90/141 (63.83%), Query Frame = 0
Query:   28 LTRKSITTSIPSSVPSSLRAKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAF-EGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASL 168
            ++R  +  S  S     L +K+L   +G DIV+KG RK++++F  P  L    AGGK G LA +DT+ P+LY+DFP+GR++  G IV P+ + L L   +G +SV C D++ +LVVFSE  W+GT +ENPEEK   MP  L
Sbjct:   26 ISRGLLGRSAASPPQLLLPSKELLKCDGKDIVKKGTRKSKFLFSFP-GLVAPVAGGKFGDLAHLDTKNPILYVDFPKGRIKLFGTIVYPKNKYLTLQLTKGSKSVICDDVIESLVVFSESWWIGTKEENPEEKKLDMPKDL 165          
BLAST of NO13G01240 vs. NCBI_GenBank
Match: XP_024530015.1 (DNA-binding protein RHL1 [Selaginella moellendorffii] >XP_024530016.1 DNA-binding protein RHL1 [Selaginella moellendorffii])

HSP 1 Score: 120.6 bits (301), Expect = 1.500e-23
Identity = 63/141 (44.68%), Postives = 90/141 (63.83%), Query Frame = 0
Query:   28 LTRKSITTSIPSSVPSSLRAKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAF-EGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASL 168
            ++R  +  S  S     L +K+L   +G DIV+KG RK++++F  P  L    AGGK G LA +DT+ P+LY+DFP+GR++  G IV P+ + L L   +G +SV C D++ +LVVFSE  W+GT +ENPEEK   MP  L
Sbjct:   26 ISRGLLGRSAASPPQLLLPSKELLKCDGKDIVKKGTRKSKFLFSFP-GLVAPVAGGKFGDLAHLDTKNPILYVDFPKGRIKLFGTIVYPKNKYLTLQLTKGSKSVICDDVIESLVVFSESWWIGTKEENPEEKKLDMPKDL 165          
BLAST of NO13G01240 vs. NCBI_GenBank
Match: OAE27237.1 (hypothetical protein AXG93_473s1080 [Marchantia polymorpha subsp. ruderalis] >PTQ34459.1 hypothetical protein MARPO_0080s0074 [Marchantia polymorpha])

HSP 1 Score: 119.8 bits (299), Expect = 2.600e-23
Identity = 65/163 (39.88%), Postives = 94/163 (57.67%), Query Frame = 0
Query:    6 SQEEKDTAVTALRASELRIGHVLTRKSITTSIPSSVPSSLRAKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAF-EGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASL 168
            S EE+  A+ + R  EL +   L  +S   +    VP+    K ++  NG DIV+KG RKT+Y+F  P  L    +GGK G L  +D+  P+LY+DFP GR++  G IV P+ + L + F  G+  + C+D   +LVVF E  W+GT +ENPEE   P P+ L
Sbjct:   12 SAEEQLLALESKRLKELAVSRGLLARSKANAPAPLVPT----KTIRKCNGKDIVKKGNRKTKYLFAFP-GLVAPVSGGKFGDLTHLDSRNPILYVDFPHGRLKLFGTIVYPKNKYLTMHFVPGRGDIVCEDYFESLVVFPESWWIGTKEENPEELRLPFPSDL 169          
BLAST of NO13G01240 vs. NCBI_GenBank
Match: XP_009107361.1 (PREDICTED: DNA-binding protein RHL1 [Brassica rapa])

HSP 1 Score: 118.2 bits (295), Expect = 7.400e-23
Identity = 65/149 (43.62%), Postives = 90/149 (60.40%), Query Frame = 0
Query:   38 PSSVPSSLR-AKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAF-EGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASLNFQIEGLTAEEMYVRGG 185
            PS   SSL+ +K +   +GCDI+RK  RK R++F  P  L+   +G  +G L ++ T+ PVLYL+FPQGRM+  G I+ P+ R L L F  G ++V C D  + ++VFSE  W+GT +ENPEE     P  L+ Q E    EE   RGG
Sbjct:   38 PSRCLSSLKPSKQVLKHHGCDIIRKSQRKNRFLFSFPGLLA-PVSGATIGDLDRLSTKNPVLYLNFPQGRMKLFGTILYPKNRYLTLQFSRGGKNVLCDDYFDNMIVFSESWWIGTKEENPEEARLDFPKELSPQAE--KTEEFDFRGG 183          
BLAST of NO13G01240 vs. NCBI_GenBank
Match: CDY41834.1 (BnaA08g03290D [Brassica napus])

HSP 1 Score: 117.5 bits (293), Expect = 1.300e-22
Identity = 65/149 (43.62%), Postives = 89/149 (59.73%), Query Frame = 0
Query:   38 PSSVPSSLR-AKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAF-EGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASLNFQIEGLTAEEMYVRGG 185
            PS   SSL  +K +   +GCDI+RK  RK R++F  P  L+   +G  +G L ++ T+ PVLYL+FPQGRM+  G I+ P+ R L L F  G ++V C D  + ++VFSE  W+GT +ENPEE     P  L+ Q E    EE   RGG
Sbjct:   38 PSRCLSSLEPSKQVLKHHGCDIIRKSQRKNRFLFSFPGLLA-PVSGATIGDLDRLSTKNPVLYLNFPQGRMKLFGTILYPKNRYLTLQFSRGGKNVLCDDYFDNMIVFSESWWIGTKEENPEEARLDFPKELSPQAE--KTEEFDFRGG 183          
BLAST of NO13G01240 vs. NCBI_GenBank
Match: XP_013655605.1 (DNA-binding protein RHL1-like [Brassica napus])

HSP 1 Score: 117.5 bits (293), Expect = 1.300e-22
Identity = 65/149 (43.62%), Postives = 89/149 (59.73%), Query Frame = 0
Query:   38 PSSVPSSLR-AKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAF-EGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASLNFQIEGLTAEEMYVRGG 185
            PS   SSL  +K +   +GCDI+RK  RK R++F  P  L+   +G  +G L ++ T+ PVLYL+FPQGRM+  G I+ P+ R L L F  G ++V C D  + ++VFSE  W+GT +ENPEE     P  L+ Q E    EE   RGG
Sbjct:   38 PSRCLSSLEPSKQVLKHHGCDIIRKSQRKNRFLFSFPGLLA-PVSGATIGDLDRLSTKNPVLYLNFPQGRMKLFGTILYPKNRYLTLQFSRGGKNVLCDDYFDNMIVFSESWWIGTKEENPEEARLDFPKELSPQAE--KTEEFDFRGG 183          
BLAST of NO13G01240 vs. NCBI_GenBank
Match: XP_024027802.1 (LOW QUALITY PROTEIN: DNA-binding protein RHL1 [Morus notabilis])

HSP 1 Score: 116.7 bits (291), Expect = 2.200e-22
Identity = 70/164 (42.68%), Postives = 99/164 (60.37%), Query Frame = 0
Query:   26 HVLTRKSITTSIPSSVPSSLRAKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAF-EGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASLNFQIEGLTAEEMYVRGGKWGG 189
            ++L++    T  P S PS + AK     +G DIV++  RK +++F  P  L+   AGGK+G L  + T+ PVLYLDFPQGRM+  G IV P+ R L L F  G +SVTC+D  + ++VFS+  W+G+A ENPEE     P  L+   +G  AE  + +GG  GG
Sbjct:   41 NILSQTHAKTLSPLS-PSKMVAKH----HGKDIVKRSQRKNKFLFSFPGLLA-PVAGGKIGELKDLGTKNPVLYLDFPQGRMKLFGTIVYPQNRYLTLQFPRGXKSVTCEDYFDNMIVFSDAWWIGSAAENPEEARLDFPKELS---DGQHAEYDF-KGGAGGG 194          
The following BLAST results are available for this feature:
BLAST of NO13G01240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21784.16.400e-6767.03dna-binding protein rhl1 [Nannochloropsis gaditana... [more]
EFJ28076.11.100e-2342.21hypothetical protein SELMODRAFT_411583 [Selaginell... [more]
XP_024531560.11.100e-2342.21DNA-binding protein RHL1 [Selaginella moellendorff... [more]
EFJ29501.11.500e-2344.68hypothetical protein SELMODRAFT_410468 [Selaginell... [more]
XP_024530015.11.500e-2344.68DNA-binding protein RHL1 [Selaginella moellendorff... [more]
OAE27237.12.600e-2339.88hypothetical protein AXG93_473s1080 [Marchantia po... [more]
XP_009107361.17.400e-2343.62PREDICTED: DNA-binding protein RHL1 [Brassica rapa... [more]
CDY41834.11.300e-2243.62BnaA08g03290D [Brassica napus][more]
XP_013655605.11.300e-2243.62DNA-binding protein RHL1-like [Brassica napus][more]
XP_024027802.12.200e-2242.68LOW QUALITY PROTEIN: DNA-binding protein RHL1 [Mor... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001772NSK001772Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01240.1NO13G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631854gene_6885Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100065g8gene8641Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01240.1NO13G01240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01240 ID=NO13G01240|Name=NO13G01240|organism=Nannochloropsis oceanica|type=gene|length=1572bp
ATGGCCCCAAAAAAATCTCAAGAAGAAAAAGACACAGCCGTCACTGCTCT
CCGGGCCAGCGAACTCCGCATCGGCCACGTTCTAACCCGCAAATCCATCA
CCACCTCCATCCCCTCTTCCGTCCCCTCCTCCCTCCGGGCGAAAGACCTC
AAAAATTGGAACGGCTGTGACATCGTCCGCAAAGGTGGTCGCAAGACCCG
GTACGTTTTCCTCCTCCCTGCCTCCCTCTCCCTCACTCAAGCCGGAGGGA
AGGTAGGAACGCTGGCACAAATGGATACAGAGACACCTGTCCTCTACCTG
GACTTCCCTCAAGGTCGAATGAGATGCCAAGGAAGAATCGTTAGGCCTGA
AGTACGGCTGTTGCCTTTGGCCTTCGAAGGAAAGCAAAGCGTGACGTGTA
AAGACATTGTGAATACCCTTGTTGTGTTCTCGGAGATAATGTGGGTGGGC
ACCGCGAAAGAAAACCCTGAAGAGAAACCTTGGCCCATGCCGGCAAGTTT
GAATTTTCAAATCGAGGGACTGACGGCGGAGGAGATGTATGTGAGGGGGG
GGAAGTGGGGAGGGAATGGAGGAAAAGACAAGGAAGGCGAGAAAGAGGAT
GAGGAGAAAGAAGGTGAGGGACGGCGGCCGCGAAGGGCGGCGACTATGAG
GTCATCGGGAGGAGGTGGAGAGAGTGAGGATGAGGAAGAGGAGGGAGATT
CTTGGGATGAAGAGGGGAGGGAGGACGAGAGGGGGAAGGAGGAGGGAGAG
GGAGTGGAAAAGCAGGAGGAGGAGAAGTCGAAGGCCTCGCCGTTGAGAGG
GCATTTGAAGAGGCGGGCCGCGTCGACGGTTGTGTATGGGGGGATGGATG
AGGACTGGGAAGAGGAAAACGAGGTGGGGGAAGAGTTAGAGGAAGAGGAG
GAAGAGGACAATGTGCAGGAGGGGGAGGACCCGTGGGAGAGAATGCGGAT
TTCGAGAAGGGATGATGAGAAGGAGAAAGGGGGAGGGGGAGGCGGTGGTG
CAGGGAAGAAAGCGGTGGTGAAGAAGGGCGTTGGCAGGAGTGATGCTGCT
GCTGCTATAGGGAAGAAGGCGAGGAAGAAGAAGAGTGAGGTTATAGACTT
GATGGATGATGATGACGAGGAAAGCGATGAGGGAAACAACGAGGACGATG
AGGATGAATTTGTCTCTGGTGATAGCTTTGCGAAGAATAGGAACAAACGC
AAGGCGGTCACTTCTACCGGTTCTGCTGCCGCTGCCAAGAAGAAAGCTCG
TCCCTCCTGTGGTGGGAGTTCGACAAAAGGAGGGAAGAAAAAGACGGCAA
TAAAAATGGTGAAAATCGATGACTACGACGACAACAACGACGAGGAGGAG
GAAGAGGACGAGGACGAGGACGAGGACGAGGACGAGGATGAGGACGAGGA
CGAGGACGAGGGCGAGAGAAGAGGAGGGCGGCACAAGCGCAAGGTGGCAG
TGATAGCGGCCCGGAGGAAGAAGGTGGTGGATGTCGACAGTGATGTTGAT
GAGGATGAGGAAGAGGACGAAGGGGAGGGGGTCGACGAGGACGACGACGA
TGATTCTGATTTTTCGGGTTAG
back to top

protein sequence of NO13G01240.1

>NO13G01240.1-protein ID=NO13G01240.1-protein|Name=NO13G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=524bp
MAPKKSQEEKDTAVTALRASELRIGHVLTRKSITTSIPSSVPSSLRAKDL
KNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYL
DFPQGRMRCQGRIVRPEVRLLPLAFEGKQSVTCKDIVNTLVVFSEIMWVG
TAKENPEEKPWPMPASLNFQIEGLTAEEMYVRGGKWGGNGGKDKEGEKED
EEKEGEGRRPRRAATMRSSGGGGESEDEEEEGDSWDEEGREDERGKEEGE
GVEKQEEEKSKASPLRGHLKRRAASTVVYGGMDEDWEEENEVGEELEEEE
EEDNVQEGEDPWERMRISRRDDEKEKGGGGGGGAGKKAVVKKGVGRSDAA
AAIGKKARKKKSEVIDLMDDDDEESDEGNNEDDEDEFVSGDSFAKNRNKR
KAVTSTGSAAAAKKKARPSCGGSSTKGGKKKTAIKMVKIDDYDDNNDEEE
EEDEDEDEDEDEDEDEDEDEGERRGGRHKRKVAVIAARRKKVVDVDSDVD
EDEEEDEGEGVDEDDDDDSDFSG*
back to top
Synonyms
Publications