NO13G01240.1, NO13G01240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01240.1
Unique NameNO13G01240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1572
Alignment locationchr13:376801..378372 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:376801..378372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01240.1 vs.
Match: EWM21784.1 (dna-binding protein rhl1 [Nannochloropsis gaditana])

HSP 1 Score: 268.1 bits (684), Expect = 5.800e-68
Identity = 131/204 (64.22%), Postives = 160/204 (78.43%), Query Frame = 0 
Query:    4 KKSQEEKDTAVTALRASELRIGHVLTRKSITTSIPSSVPSSLRAKDLKNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYLDFPQGRMRCQGRIVRPEVRLLPLAFEGKQSVTCKDIVNTLVVFSEIMWVGTAKENPEEKPWPMPASLNFQIEGLTAEEMYVRGGKWGGNGGKDKEGEKEDEEKEGEG 208
            K S+ + D A+  LR +E R+ HVLT+K +       VPSS+R KDL+ W+GCDIVRKG +KTRYVFLLPA +++TQAGGK+GT+A MDTETPVLYLDFPQGRM+CQGRIVRPEVRLLPLAFEGK+SVTCKD+VNTLVVFS++ W+GT KENPEEKPWP P  +NFQ+EG  A E    GG     GG+++EG++   E EG G
Sbjct:    8 KASKADDDPALVELRDAEARVEHVLTKKPVNLDAAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFEGKRSVTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEMNFQVEGPQAGE--ALGGTRKEGGGREREGKEAVGEVEGPG 209
The following BLAST results are available for this feature:
BLAST of NO13G01240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21784.15.800e-6864.22dna-binding protein rhl1 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01240NO13G01240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01240.1NO13G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01240.1.cds1NO13G01240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01240.1 ID=NO13G01240.1|Name=NO13G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1572bp
ATGGCCCCAAAAAAATCTCAAGAAGAAAAAGACACAGCCGTCACTGCTCT
CCGGGCCAGCGAACTCCGCATCGGCCACGTTCTAACCCGCAAATCCATCA
CCACCTCCATCCCCTCTTCCGTCCCCTCCTCCCTCCGGGCGAAAGACCTC
AAAAATTGGAACGGCTGTGACATCGTCCGCAAAGGTGGTCGCAAGACCCG
GTACGTTTTCCTCCTCCCTGCCTCCCTCTCCCTCACTCAAGCCGGAGGGA
AGGTAGGAACGCTGGCACAAATGGATACAGAGACACCTGTCCTCTACCTG
GACTTCCCTCAAGGTCGAATGAGATGCCAAGGAAGAATCGTTAGGCCTGA
AGTACGGCTGTTGCCTTTGGCCTTCGAAGGAAAGCAAAGCGTGACGTGTA
AAGACATTGTGAATACCCTTGTTGTGTTCTCGGAGATAATGTGGGTGGGC
ACCGCGAAAGAAAACCCTGAAGAGAAACCTTGGCCCATGCCGGCAAGTTT
GAATTTTCAAATCGAGGGACTGACGGCGGAGGAGATGTATGTGAGGGGGG
GGAAGTGGGGAGGGAATGGAGGAAAAGACAAGGAAGGCGAGAAAGAGGAT
GAGGAGAAAGAAGGTGAGGGACGGCGGCCGCGAAGGGCGGCGACTATGAG
GTCATCGGGAGGAGGTGGAGAGAGTGAGGATGAGGAAGAGGAGGGAGATT
CTTGGGATGAAGAGGGGAGGGAGGACGAGAGGGGGAAGGAGGAGGGAGAG
GGAGTGGAAAAGCAGGAGGAGGAGAAGTCGAAGGCCTCGCCGTTGAGAGG
GCATTTGAAGAGGCGGGCCGCGTCGACGGTTGTGTATGGGGGGATGGATG
AGGACTGGGAAGAGGAAAACGAGGTGGGGGAAGAGTTAGAGGAAGAGGAG
GAAGAGGACAATGTGCAGGAGGGGGAGGACCCGTGGGAGAGAATGCGGAT
TTCGAGAAGGGATGATGAGAAGGAGAAAGGGGGAGGGGGAGGCGGTGGTG
CAGGGAAGAAAGCGGTGGTGAAGAAGGGCGTTGGCAGGAGTGATGCTGCT
GCTGCTATAGGGAAGAAGGCGAGGAAGAAGAAGAGTGAGGTTATAGACTT
GATGGATGATGATGACGAGGAAAGCGATGAGGGAAACAACGAGGACGATG
AGGATGAATTTGTCTCTGGTGATAGCTTTGCGAAGAATAGGAACAAACGC
AAGGCGGTCACTTCTACCGGTTCTGCTGCCGCTGCCAAGAAGAAAGCTCG
TCCCTCCTGTGGTGGGAGTTCGACAAAAGGAGGGAAGAAAAAGACGGCAA
TAAAAATGGTGAAAATCGATGACTACGACGACAACAACGACGAGGAGGAG
GAAGAGGACGAGGACGAGGACGAGGACGAGGACGAGGATGAGGACGAGGA
CGAGGACGAGGGCGAGAGAAGAGGAGGGCGGCACAAGCGCAAGGTGGCAG
TGATAGCGGCCCGGAGGAAGAAGGTGGTGGATGTCGACAGTGATGTTGAT
GAGGATGAGGAAGAGGACGAAGGGGAGGGGGTCGACGAGGACGACGACGA
TGATTCTGATTTTTCGGGTTAG
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protein sequence of NO13G01240.1

>NO13G01240.1-protein ID=NO13G01240.1-protein|Name=NO13G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=524bp
MAPKKSQEEKDTAVTALRASELRIGHVLTRKSITTSIPSSVPSSLRAKDL
KNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYL
DFPQGRMRCQGRIVRPEVRLLPLAFEGKQSVTCKDIVNTLVVFSEIMWVG
TAKENPEEKPWPMPASLNFQIEGLTAEEMYVRGGKWGGNGGKDKEGEKED
EEKEGEGRRPRRAATMRSSGGGGESEDEEEEGDSWDEEGREDERGKEEGE
GVEKQEEEKSKASPLRGHLKRRAASTVVYGGMDEDWEEENEVGEELEEEE
EEDNVQEGEDPWERMRISRRDDEKEKGGGGGGGAGKKAVVKKGVGRSDAA
AAIGKKARKKKSEVIDLMDDDDEESDEGNNEDDEDEFVSGDSFAKNRNKR
KAVTSTGSAAAAKKKARPSCGGSSTKGGKKKTAIKMVKIDDYDDNNDEEE
EEDEDEDEDEDEDEDEDEDEGERRGGRHKRKVAVIAARRKKVVDVDSDVD
EDEEEDEGEGVDEDDDDDSDFSG*
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mRNA from alignment at chr13:376801..378372+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01240.1 ID=NO13G01240.1|Name=NO13G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1572bp|location=Sequence derived from alignment at chr13:376801..378372+ (Nannochloropsis oceanica)
ATGGCCCCAAAAAAATCTCAAGAAGAAAAAGACACAGCCGTCACTGCTCT
CCGGGCCAGCGAACTCCGCATCGGCCACGTTCTAACCCGCAAATCCATCA
CCACCTCCATCCCCTCTTCCGTCCCCTCCTCCCTCCGGGCGAAAGACCTC
AAAAATTGGAACGGCTGTGACATCGTCCGCAAAGGTGGTCGCAAGACCCG
GTACGTTTTCCTCCTCCCTGCCTCCCTCTCCCTCACTCAAGCCGGAGGGA
AGGTAGGAACGCTGGCACAAATGGATACAGAGACACCTGTCCTCTACCTG
GACTTCCCTCAAGGTCGAATGAGATGCCAAGGAAGAATCGTTAGGCCTGA
AGTACGGCTGTTGCCTTTGGCCTTCGAAGGAAAGCAAAGCGTGACGTGTA
AAGACATTGTGAATACCCTTGTTGTGTTCTCGGAGATAATGTGGGTGGGC
ACCGCGAAAGAAAACCCTGAAGAGAAACCTTGGCCCATGCCGGCAAGTTT
GAATTTTCAAATCGAGGGACTGACGGCGGAGGAGATGTATGTGAGGGGGG
GGAAGTGGGGAGGGAATGGAGGAAAAGACAAGGAAGGCGAGAAAGAGGAT
GAGGAGAAAGAAGGTGAGGGACGGCGGCCGCGAAGGGCGGCGACTATGAG
GTCATCGGGAGGAGGTGGAGAGAGTGAGGATGAGGAAGAGGAGGGAGATT
CTTGGGATGAAGAGGGGAGGGAGGACGAGAGGGGGAAGGAGGAGGGAGAG
GGAGTGGAAAAGCAGGAGGAGGAGAAGTCGAAGGCCTCGCCGTTGAGAGG
GCATTTGAAGAGGCGGGCCGCGTCGACGGTTGTGTATGGGGGGATGGATG
AGGACTGGGAAGAGGAAAACGAGGTGGGGGAAGAGTTAGAGGAAGAGGAG
GAAGAGGACAATGTGCAGGAGGGGGAGGACCCGTGGGAGAGAATGCGGAT
TTCGAGAAGGGATGATGAGAAGGAGAAAGGGGGAGGGGGAGGCGGTGGTG
CAGGGAAGAAAGCGGTGGTGAAGAAGGGCGTTGGCAGGAGTGATGCTGCT
GCTGCTATAGGGAAGAAGGCGAGGAAGAAGAAGAGTGAGGTTATAGACTT
GATGGATGATGATGACGAGGAAAGCGATGAGGGAAACAACGAGGACGATG
AGGATGAATTTGTCTCTGGTGATAGCTTTGCGAAGAATAGGAACAAACGC
AAGGCGGTCACTTCTACCGGTTCTGCTGCCGCTGCCAAGAAGAAAGCTCG
TCCCTCCTGTGGTGGGAGTTCGACAAAAGGAGGGAAGAAAAAGACGGCAA
TAAAAATGGTGAAAATCGATGACTACGACGACAACAACGACGAGGAGGAG
GAAGAGGACGAGGACGAGGACGAGGACGAGGACGAGGATGAGGACGAGGA
CGAGGACGAGGGCGAGAGAAGAGGAGGGCGGCACAAGCGCAAGGTGGCAG
TGATAGCGGCCCGGAGGAAGAAGGTGGTGGATGTCGACAGTGATGTTGAT
GAGGATGAGGAAGAGGACGAAGGGGAGGGGGTCGACGAGGACGACGACGA
TGATTCTGATTTTTCGGGTTAG
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Coding sequence (CDS) from alignment at chr13:376801..378372+

>NO13G01240.1 ID=NO13G01240.1|Name=NO13G01240.1|organism=Nannochloropsis oceanica|type=CDS|length=1572bp|location=Sequence derived from alignment at chr13:376801..378372+ (Nannochloropsis oceanica)
ATGGCCCCAAAAAAATCTCAAGAAGAAAAAGACACAGCCGTCACTGCTCT
CCGGGCCAGCGAACTCCGCATCGGCCACGTTCTAACCCGCAAATCCATCA
CCACCTCCATCCCCTCTTCCGTCCCCTCCTCCCTCCGGGCGAAAGACCTC
AAAAATTGGAACGGCTGTGACATCGTCCGCAAAGGTGGTCGCAAGACCCG
GTACGTTTTCCTCCTCCCTGCCTCCCTCTCCCTCACTCAAGCCGGAGGGA
AGGTAGGAACGCTGGCACAAATGGATACAGAGACACCTGTCCTCTACCTG
GACTTCCCTCAAGGTCGAATGAGATGCCAAGGAAGAATCGTTAGGCCTGA
AGTACGGCTGTTGCCTTTGGCCTTCGAAGGAAAGCAAAGCGTGACGTGTA
AAGACATTGTGAATACCCTTGTTGTGTTCTCGGAGATAATGTGGGTGGGC
ACCGCGAAAGAAAACCCTGAAGAGAAACCTTGGCCCATGCCGGCAAGTTT
GAATTTTCAAATCGAGGGACTGACGGCGGAGGAGATGTATGTGAGGGGGG
GGAAGTGGGGAGGGAATGGAGGAAAAGACAAGGAAGGCGAGAAAGAGGAT
GAGGAGAAAGAAGGTGAGGGACGGCGGCCGCGAAGGGCGGCGACTATGAG
GTCATCGGGAGGAGGTGGAGAGAGTGAGGATGAGGAAGAGGAGGGAGATT
CTTGGGATGAAGAGGGGAGGGAGGACGAGAGGGGGAAGGAGGAGGGAGAG
GGAGTGGAAAAGCAGGAGGAGGAGAAGTCGAAGGCCTCGCCGTTGAGAGG
GCATTTGAAGAGGCGGGCCGCGTCGACGGTTGTGTATGGGGGGATGGATG
AGGACTGGGAAGAGGAAAACGAGGTGGGGGAAGAGTTAGAGGAAGAGGAG
GAAGAGGACAATGTGCAGGAGGGGGAGGACCCGTGGGAGAGAATGCGGAT
TTCGAGAAGGGATGATGAGAAGGAGAAAGGGGGAGGGGGAGGCGGTGGTG
CAGGGAAGAAAGCGGTGGTGAAGAAGGGCGTTGGCAGGAGTGATGCTGCT
GCTGCTATAGGGAAGAAGGCGAGGAAGAAGAAGAGTGAGGTTATAGACTT
GATGGATGATGATGACGAGGAAAGCGATGAGGGAAACAACGAGGACGATG
AGGATGAATTTGTCTCTGGTGATAGCTTTGCGAAGAATAGGAACAAACGC
AAGGCGGTCACTTCTACCGGTTCTGCTGCCGCTGCCAAGAAGAAAGCTCG
TCCCTCCTGTGGTGGGAGTTCGACAAAAGGAGGGAAGAAAAAGACGGCAA
TAAAAATGGTGAAAATCGATGACTACGACGACAACAACGACGAGGAGGAG
GAAGAGGACGAGGACGAGGACGAGGACGAGGACGAGGATGAGGACGAGGA
CGAGGACGAGGGCGAGAGAAGAGGAGGGCGGCACAAGCGCAAGGTGGCAG
TGATAGCGGCCCGGAGGAAGAAGGTGGTGGATGTCGACAGTGATGTTGAT
GAGGATGAGGAAGAGGACGAAGGGGAGGGGGTCGACGAGGACGACGACGA
TGATTCTGATTTTTCGGGTTAG
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Synonyms
Publications