NO13G01170, NO13G01170 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G01170 vs. NCBI_GenBank
Match: EWM21793.1 (u6 snrna-associated sm-like protein lsm4 [Nannochloropsis gaditana]) HSP 1 Score: 185.3 bits (469), Expect = 1.600e-43 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 Query: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 87 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 86
BLAST of NO13G01170 vs. NCBI_GenBank
Match: ETI45030.1 (U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica P1569] >ETK84999.1 U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica] >ETL38431.1 U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica] >ETL91546.1 U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica] >ETM44841.1 U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica] >ETO73624.1 U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica P1976] >ETP14830.1 U6 snRNA-associated Sm-like protein LSm4 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 166.0 bits (419), Expect = 1.000e-37 Identity = 70/86 (81.40%), Postives = 81/86 (94.19%), Query Frame = 0 Query: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 87 MLPLSLLKTAQGHPMLVELKNGDTYNG LV+CDTWMN+ LR+VICTS+DGDRFWK+PECY+RGN+IKY+RVP E++DMVNEED + Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFNK 86
BLAST of NO13G01170 vs. NCBI_GenBank
Match: XP_008893374.1 (hypothetical protein PPTG_01744 [Phytophthora parasitica INRA-310] >ETN21601.1 hypothetical protein PPTG_01744 [Phytophthora parasitica INRA-310] >ETP42871.1 hypothetical protein F442_10208 [Phytophthora parasitica P10297]) HSP 1 Score: 166.0 bits (419), Expect = 1.000e-37 Identity = 70/86 (81.40%), Postives = 81/86 (94.19%), Query Frame = 0 Query: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 87 MLPLSLLKTAQGHPMLVELKNGDTYNG LV+CDTWMN+ LR+VICTS+DGDRFWK+PECY+RGN+IKY+RVP E++DMVNEED + Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFNK 86
BLAST of NO13G01170 vs. NCBI_GenBank
Match: XP_024584582.1 (u6 snrna-associated sm-like protein lsm4 [Plasmopara halstedii] >CEG48213.1 u6 snrna-associated sm-like protein lsm4 [Plasmopara halstedii]) HSP 1 Score: 164.9 bits (416), Expect = 2.300e-37 Identity = 69/86 (80.23%), Postives = 82/86 (95.35%), Query Frame = 0 Query: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 87 MLPLSLL+TAQGHPMLVELKNGDTYNG LV+CDTWMN+ LR+VICTS+DGDRFWK+PECY+RGN+IKY+RVP E++DMVNE+DL + Sbjct: 1 MLPLSLLQTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEDDLNK 86
BLAST of NO13G01170 vs. NCBI_GenBank
Match: XP_009531179.1 (hypothetical protein PHYSODRAFT_347058 [Phytophthora sojae] >EGZ13750.1 hypothetical protein PHYSODRAFT_347058 [Phytophthora sojae]) HSP 1 Score: 164.5 bits (415), Expect = 2.900e-37 Identity = 69/85 (81.18%), Postives = 80/85 (94.12%), Query Frame = 0 Query: 2 LPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 87 LPLSLLKTAQGHPMLVELKNGDTYNG LV+CDTWMN+ LR+VICTS+DGDRFWK+PECY+RGN+IKY+RVP E++DMVNEED + Sbjct: 4 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFSK 88
BLAST of NO13G01170 vs. NCBI_GenBank
Match: GAQ92019.1 (U6 snRNA-associated Sm-like protein LSm4 [Klebsormidium nitens]) HSP 1 Score: 161.0 bits (406), Expect = 3.300e-36 Identity = 71/86 (82.56%), Postives = 81/86 (94.19%), Query Frame = 0 Query: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 87 MLPLSLLKTAQGHPMLVELKNG+TYNG LV+CDTWMNI LR+VICTS+DGDRFW++PECYVRGN+IKYLRVP+EVID V EE ++R Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYVRGNTIKYLRVPDEVIDKVQEETIKR 86
BLAST of NO13G01170 vs. NCBI_GenBank
Match: XP_024394039.1 (sm-like protein LSM4 [Physcomitrella patens] >PNR40941.1 hypothetical protein PHYPA_018344 [Physcomitrella patens]) HSP 1 Score: 160.2 bits (404), Expect = 5.500e-36 Identity = 70/86 (81.40%), Postives = 81/86 (94.19%), Query Frame = 0 Query: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 87 MLPLSLLKTAQGHPMLVELKNG+TYNG LV+CDTWMNI LR+VICTS+DGDRFW++PECY+RGN+IKYLRVP+EVID V EE ++R Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETVKR 86
BLAST of NO13G01170 vs. NCBI_GenBank
Match: OIV91290.1 (hypothetical protein TanjilG_01821 [Lupinus angustifolius]) HSP 1 Score: 159.1 bits (401), Expect = 1.200e-35 Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 0 Query: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 87 MLPLSLLKTAQGHPMLVELKNG+TYNG LV+CDTWMNI LR+VICTS+DGDRFW++PECY+RGN+IKYLRVP+EVID V EE R Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEESKSR 86
BLAST of NO13G01170 vs. NCBI_GenBank
Match: XP_019426976.1 (PREDICTED: sm-like protein LSM4 [Lupinus angustifolius]) HSP 1 Score: 159.1 bits (401), Expect = 1.200e-35 Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 0 Query: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 87 MLPLSLLKTAQGHPMLVELKNG+TYNG LV+CDTWMNI LR+VICTS+DGDRFW++PECY+RGN+IKYLRVP+EVID V EE R Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEESKSR 86
BLAST of NO13G01170 vs. NCBI_GenBank
Match: ACU14927.1 (unknown [Glycine max]) HSP 1 Score: 158.7 bits (400), Expect = 1.600e-35 Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 0 Query: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 87 MLPLSLLKTAQGHPMLVELKNG+TYNG LV+CDTWMNI LR+VICTS+DGDRFW++PECY+RGN+IKYLRVP+EVID V EE R Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSR 86 The following BLAST results are available for this feature:
BLAST of NO13G01170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G01170 ID=NO13G01170|Name=NO13G01170|organism=Nannochloropsis oceanica|type=gene|length=1533bpback to top protein sequence of NO13G01170.2 >NO13G01170.2-protein ID=NO13G01170.2-protein|Name=NO13G01170.2|organism=Nannochloropsis oceanica|type=polypeptide|length=158bpback to top protein sequence of NO13G01170.1 >NO13G01170.1-protein ID=NO13G01170.1-protein|Name=NO13G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bpback to top Synonyms
Publications
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