NO13G01170.1, NO13G01170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01170.1
Unique NameNO13G01170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length756
Alignment locationchr13:360094..361626 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:360094..361626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01170.1 vs.
Match: EWM21793.1 (u6 snrna-associated sm-like protein lsm4 [Nannochloropsis gaditana])

HSP 1 Score: 189.1 bits (479), Expect = 1.100e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 
Query:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERER 89
            MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERER
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERER 88
The following BLAST results are available for this feature:
BLAST of NO13G01170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21793.11.100e-44100.00u6 snrna-associated sm-like protein lsm4 [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01170NO13G01170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01170.1NO13G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01170.1.cds1NO13G01170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01170.1.cds2NO13G01170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01170.1.cds3NO13G01170.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01170.1.cds4NO13G01170.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01170.1.cds5NO13G01170.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01170.1 ID=NO13G01170.1|Name=NO13G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=756bp
ACAGGCAAGGGCACAAAGCAAGCTATCAGACGCCTGCATTCTTTGCCTCC
TCCGTCGCGTTTTTTCTCCACTATTACGTTATCAATTAGACCCCAGCGCA
CTCCATTACTTCTACTACATCATTAAACACAATGTTGCCCTTGTCCCTCC
TCAAGACGGCGCAAGGCCACCCAATGTTGGTGGAGCTTAAAAATGGCGAC
ACTTACAATGGCCGGCTAGTATCGTGTGATACCTGGATGAACATCACGTT
GAGGGACGTCATCTGCACGTCACGGGATGGTGACCGCTTCTGGAAGATCC
CCGAGTGCTACGTGCGTGGGAACAGCATCAAGTACCTGCGGGTGCCGGAG
GAAGTGATCGACATGGTCAACGAGGAGGACTTGGAAAGGGAACGCAGGGG
AGGTGCCGGGCGAGGACGCGGGCGATTGGGTGGGGGCCGGGGAGGACGAG
GGTATGGTCGAGGTGGCGGGGAGGGTCGTGGTGGCGCCCGGGGAGATTTT
CGCGGCGGGCGTGGCGGGGGTGACCGAGGGGGACGAGGGGGAGGGAGGGG
GGAGTATCGTGGGGGAGGAAGGGGAGATTACAGGGGAGGACGCGGAGGGG
GAGGTGGACGAGGAGGGGAGGGCCCGAGTGGAAGACAATAGGGGCCTCTG
CTGTGTGTTGGTGGGTGAGGGAAAGGAGGAGAATGAAGGAAGAGGAGAAG
AAGGCAACGATAGGGGAAAAAAGATGAGAAGAAAGAAAGAAGTATAGGAC
TGGAAA
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protein sequence of NO13G01170.1

>NO13G01170.1-protein ID=NO13G01170.1-protein|Name=NO13G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDG
DRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERERRGGAGRGRGRLG
GGRGGRGYGRGGGEGRGGARGDFRGGRGGGDRGGRGGGRGEYRGGGRGDY
RGGRGGGGGRGGEGPSGRQ*
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mRNA from alignment at chr13:360094..361626-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01170.1 ID=NO13G01170.1|Name=NO13G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp|location=Sequence derived from alignment at chr13:360094..361626- (Nannochloropsis oceanica)
ACAGGCAAGGGCACAAAGCAAGCTATCAGACGCCTGCATTCTTTGCCTCC
TCCGTCGCGTTTTTTCTCCACTATTACGTTATCAATTAGACCCCAGCGCA
CTCCATTACTTCTACTACATCATTAAACACAATGGTAAGATCATTGGGAT
AACATGCCAGCGTTTCCTTGGACTCTTAGAACTTCGTGCCCGAGCCTGAA
CCAACCTGCCCCTCCTTCCTACCCACCGTCTACTTAGTTGCCCTTGTCCC
TCCTCAAGACGGCGCAAGGCCACCCAATGTTGGTGGAGCTTAAAAATGGC
GACACTTACAATGGCCGGCTAGTATCGTGTGATACCTGGATGAACATCAC
GTTGAGGGACGTCATCTGCACGTCACGGGTAGGAGAGGGTTAGAGAGGGG
TGGGAAAGATGGGAGAAAAGGTCCGAAGGGTGAGAGAGAGGTTGCAATAA
TATGATCTGAATTCTGATTGAGAAGTGGGCGGATAACCTGAGGCAGAAAG
TATGTATCATCGTTTAGAGCGCTGCAGAGGGGGTAACGAGGGCGTTGGCG
TGACATGCTTTCTGTTTTGTCAAAACGCGTAAAGGAGATGGGGAGCAGAC
AATTACTTACAACATCTCCTCCACTCCTTCCCCATTGGTCTTCGTCCACC
ATGATTGCGCAGGATGGTGACCGCTTCTGGAAGATCCCCGAGTGCTACGT
GCGTGGGAACAGCATCAAGTACCTGCGGGTGCCGGAGGAAGTGATCGACA
TGGTCAACGAGGAGGACTTGGAAAGGGAACGTGCGTATGCCATGGGGTGG
GGGCTGTCGAACACTTCGTTTGCTTTATTTTCAATTGTGGTTCATACTGC
TTCCAAGGAGAGATGATGGGGGTATCTCTTTGTGCATGTGTGTTTGTGTG
TGTTTGTTATCGTGTGGTAGCACCAGGGGGCGGTTGAGTTTTTGTGTGCA
TGTGTCTTCTATTTCCTTTCCCTTGTCACGGTGAAGCAATCTTTTCCATC
ACATTCTGTTCCTTTGTCAAACCATGTACAGGCAGGGGAGGTGCCGGGCG
AGGACGCGGGCGATTGGGTGGGGGCCGGGGAGGACGAGGTAAGGGAACCG
AACGGAAGGGAGCAAAATGGATGTAGGGACAGAGAACGTGATAGAGACAG
ACACAACCCAGATCGCAATTTCACTTAAACCCGCGATCACACACACTGCT
TTGCTTATACCAACGAATCCCAAACAGGGTATGGTCGAGGTGGCGGGGAG
GGTCGTGGTGGCGCCCGGGGAGATTTTCGCGGCGGGCGTGGCGGGGGTGA
CCGAGGGGGACGAGGGGGAGGGAGGGGGGAGTATCGTGGGGGAGGAAGGG
GAGATTACAGGGGAGGACGCGGAGGGGGAGGTGGACGAGGAGGGGAGGGC
CCGAGTGGAAGACAATAGGGGCCTCTGCTGTGTGTTGGTGGGTGAGGGAA
AGGAGGAGAATGAAGGAAGAGGAGAAGAAGGCAACGATAGGGGAAAAAAG
ATGAGAAGAAAGAAAGAAGTATAGGACTGGAAA
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Coding sequence (CDS) from alignment at chr13:360094..361626-

>NO13G01170.1 ID=NO13G01170.1|Name=NO13G01170.1|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at chr13:360094..361626- (Nannochloropsis oceanica)
ATGTTGCCCTTGTCCCTCCTCAAGACGGCGCAAGGCCACCCAATGTTGGT
GGAGCTTAAAAATGGCGACACTTACAATGGCCGGCTAGTATCGTGTGATA
CCTGGATGAACATCACGTTGAGGGACGTCATCTGCACGTCACGGGATGGT
GACCGCTTCTGGAAGATCCCCGAGTGCTACGTGCGTGGGAACAGCATCAA
GTACCTGCGGGTGCCGGAGGAAGTGATCGACATGGTCAACGAGGAGGACT
TGGAAAGGGAACGCAGGGGAGGTGCCGGGCGAGGACGCGGGCGATTGGGT
GGGGGCCGGGGAGGACGAGGGTATGGTCGAGGTGGCGGGGAGGGTCGTGG
TGGCGCCCGGGGAGATTTTCGCGGCGGGCGTGGCGGGGGTGACCGAGGGG
GACGAGGGGGAGGGAGGGGGGAGTATCGTGGGGGAGGAAGGGGAGATTAC
AGGGGAGGACGCGGAGGGGGAGGTGGACGAGGAGGGGAGGGCCCGAGTGG
AAGACAATAG
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Synonyms
Publications