NO13G00800, NO13G00800 (gene) Nannochloropsis oceanica

Overview
NameNO13G00800
Unique NameNO13G00800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2989
Alignment locationchr13:262747..265735 +

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Properties
Property NameValue
DescriptionLarge subunit ribosomal protein L26e
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:262747..265735 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR005756Ribosomal_L26/L24P_euk/arc
IPR005824KOW
Homology
BLAST of NO13G00800 vs. NCBI_GenBank
Match: XP_018387710.1 (ribosomal protein L24 [Alternaria alternata] >OAG22289.1 ribosomal protein L24 [Alternaria alternata] >OWY48385.1 ribosomal protein L24 [Alternaria alternata])

HSP 1 Score: 112.8 bits (281), Expect = 1.400e-21
Identity = 68/132 (51.52%), Postives = 84/132 (63.64%), Query Frame = 0
Query:   73 RSSQAARRRTSFLKHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRAE 205
            +S  A+ RR S   H  AP   RR IMS+PLSKELR +H GVRSIP+R  DE+ V  G ++ + GKV  V R KY +HV GI REKS  +       ++P+PI  S V ITKL LD  RE IL+RK+AGR E
Sbjct:    5 QSMVASSRRKSRKAHFSAPSSVRRVIMSAPLSKELREKH-GVRSIPIRKDDEITVVRGSNKGREGKVSSVYRLKYCLHVNGIVREKSNGQ-------SVPIPIAPSKVVITKLKLDKDREQILERKSAGREE 128          
BLAST of NO13G00800 vs. NCBI_GenBank
Match: KZM21807.1 (structural constituent of ribosome [Ascochyta rabiei])

HSP 1 Score: 112.5 bits (280), Expect = 1.900e-21
Identity = 68/127 (53.54%), Postives = 82/127 (64.57%), Query Frame = 0
Query:   77 AARRRTSFLKHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRA 204
            ++ RR S   H  AP   RR IMS+PLSKELR +H GVRSIP+R  DE+ V  G ++ + GKV  V R KY IHV GI REKS  +       ++PVPI  S V ITKL LD  RE IL+RK+AGRA
Sbjct:    6 SSSRRNSRKAHFSAPSSVRRVIMSAPLSKELREKH-GVRSIPIRKDDEITVVRGSNKGREGKVNSVYRLKYCIHVNGIVREKSNGQ-------SVPVPIAPSKVVITKLKLDKDREQILERKSAGRA 124          
BLAST of NO13G00800 vs. NCBI_GenBank
Match: XP_001797270.1 (hypothetical protein SNOG_06909 [Parastagonospora nodorum SN15] >EAT85560.1 hypothetical protein SNOG_06909 [Parastagonospora nodorum SN15])

HSP 1 Score: 112.1 bits (279), Expect = 2.400e-21
Identity = 67/132 (50.76%), Postives = 84/132 (63.64%), Query Frame = 0
Query:   73 RSSQAARRRTSFLKHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRAE 205
            RS  A+ RR S   H  AP   RR IMS+PLSKELR +H GVRSIP+R  DE++V  G ++ + GKV  V R KY IHV GI REKS  +       ++P+P+  S V +TKL LD  RE IL+RK+ GR E
Sbjct:    3 RSIVASSRRKSRKAHFSAPSSVRRVIMSAPLSKELREKH-GVRSIPIRKDDEIMVVRGSNKGREGKVTSVYRLKYCIHVNGIVREKSNGQ-------SVPIPLAPSKVVVTKLKLDKDREKILERKSNGREE 126          
BLAST of NO13G00800 vs. NCBI_GenBank
Match: OAL50808.1 (ribosomal protein L24 [Pyrenochaeta sp. DS3sAY3a])

HSP 1 Score: 111.7 bits (278), Expect = 3.200e-21
Identity = 67/135 (49.63%), Postives = 83/135 (61.48%), Query Frame = 0
Query:   77 AARRRTSFLKHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRAELAARKNS 212
            A+ RR S   H  AP   RR IMS+PLSKELR +H GVRSIP+R  DE+ V  G ++ + GK+  V R KY IHV GI REKS  +       ++P+PI  S V +TKL LD  RE IL+RK AGR E   R  +
Sbjct:    9 ASSRRKSRKAHFSAPSSVRRVIMSAPLSKELREKH-GVRSIPLRKDDEITVVRGSNKGREGKITSVYRLKYVIHVNGIVREKSNGQ-------SVPIPIAPSKVVVTKLKLDKDREQILERKNAGREEKKKRSEA 135          
BLAST of NO13G00800 vs. NCBI_GenBank
Match: OAK98745.1 (ribosomal protein L24 [Stagonospora sp. SRC1lsM3a])

HSP 1 Score: 111.3 bits (277), Expect = 4.200e-21
Identity = 67/143 (46.85%), Postives = 88/143 (61.54%), Query Frame = 0
Query:   69 MGNHRSSQAARRRTSFLKHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRAELAARKNS 212
            M   +S  A+ RR S   H  AP   RR IMS+PLSKELR +H GVRSIPVR  DE++V  G ++ + GK+  V R KY IHV GI REKS  +       ++P+P+  S V +TKL LD  RE IL+RK  GR E  +++ +
Sbjct:    1 MAKVQSMVASSRRKSRKAHFSAPSSARRVIMSAPLSKELREKH-GVRSIPVRKDDEIMVVRGSNKGREGKITSVYRLKYCIHVNGIVREKSNGQ-------SVPIPLAPSKVVVTKLKLDKDREQILERKKNGREEKKSKQQA 135          
BLAST of NO13G00800 vs. NCBI_GenBank
Match: XP_006691267.1 (60S ribosomal protein L26-like protein [Chaetomium thermophilum var. thermophilum DSM 1495] >EGS24025.1 60S ribosomal protein L26-like protein [Chaetomium thermophilum var. thermophilum DSM 1495])

HSP 1 Score: 110.2 bits (274), Expect = 9.300e-21
Identity = 68/137 (49.64%), Postives = 86/137 (62.77%), Query Frame = 0
Query:   73 RSSQAARRRTSFLKHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRAELAARK 210
            R + ++ RR +   H  AP   RR IMS+PLSKELR ++  VRSIP+R GDEV +  G H+ K GKV  V R KY IHVE +TREK+       T  T+P+ I  S+V ITKL+LD  RE IL R  AGR ++A  K
Sbjct:    4 RPTVSSSRRKARKAHFSAPSSVRRVIMSAPLSKELREKY-NVRSIPIRKGDEVQIVRGAHKDKEGKVTSVYRLKYVIHVERVTREKA-------TGQTVPIGIHPSNVVITKLHLDKDRENILARIKAGREQVAKAK 132          
BLAST of NO13G00800 vs. NCBI_GenBank
Match: OSS45766.1 (hypothetical protein B5807_09594 [Epicoccum nigrum])

HSP 1 Score: 110.2 bits (274), Expect = 9.300e-21
Identity = 68/135 (50.37%), Postives = 84/135 (62.22%), Query Frame = 0
Query:   77 AARRRTSFLKHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRAELAARKNS 212
            ++ RR S   H  AP   RR IMS+PLSKELR ++ GVRSIPVR  DE+ V  G ++ + GK+  V R KY IHV GI REKS  +       ++PVPI  S V ITKL LD  RE IL+RK AGRA    +K +
Sbjct:    6 SSSRRNSRKAHFSAPSSVRRVIMSAPLSKELREKY-GVRSIPVRKDDEIQVVRGSNKGREGKINSVYRLKYCIHVNGIVREKSNGQ-------SVPVPIATSKVVITKLKLDKDREQILERKGAGRAAKKEKKEN 132          
BLAST of NO13G00800 vs. NCBI_GenBank
Match: XP_006220108.1 (PREDICTED: 60S ribosomal protein L26 [Vicugna pacos])

HSP 1 Score: 108.2 bits (269), Expect = 3.500e-20
Identity = 61/119 (51.26%), Postives = 79/119 (66.39%), Query Frame = 0
Query:   86 KHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRAE 205
            +H  AP H RR IMS+PL+KELRA+H G+RSIP+R  DEV+V  G HR   G+VI   RKK+ IHV+ ITREK          +T+ + I  S V +TKL LD  R  +++RKAAGRA+
Sbjct:   17 QHFNAPSHERRKIMSAPLTKELRAKH-GIRSIPIRVDDEVIVMRGRHRGNTGRVIRCYRKKFVIHVDKITREKG-------NGSTVHIGIHPSKVALTKLKLDKDRRDLVERKAAGRAK 127          
BLAST of NO13G00800 vs. NCBI_GenBank
Match: KJH45326.1 (ribosomal protein L24 [Dictyocaulus viviparus] >PIO72480.1 ribosomal protein L24 [Teladorsagia circumcincta])

HSP 1 Score: 108.2 bits (269), Expect = 3.500e-20
Identity = 61/119 (51.26%), Postives = 79/119 (66.39%), Query Frame = 0
Query:   86 KHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRAE 205
            +H  AP H RR IMS+PL+KELRA+H G+RSIP+R  DEV+V  G HR   G+VI   RKK+ IHV+ ITREK          +T+ + I  S V +TKL LD  R  +++RKAAGRA+
Sbjct:   17 QHFNAPSHERRRIMSAPLTKELRAKH-GIRSIPIRVDDEVIVMRGRHRGNTGRVIRCYRKKFVIHVDKITREKG-------NGSTVHIGIHPSKVALTKLKLDKDRRDLVERKAAGRAK 127          
BLAST of NO13G00800 vs. NCBI_GenBank
Match: XP_002630145.1 (C. briggsae CBR-RPL-26 protein [Caenorhabditis briggsae] >CAP22078.1 Protein CBR-RPL-26 [Caenorhabditis briggsae] >PIC44506.1 hypothetical protein B9Z55_004851 [Caenorhabditis nigoni])

HSP 1 Score: 107.8 bits (268), Expect = 4.600e-20
Identity = 63/132 (47.73%), Postives = 85/132 (64.39%), Query Frame = 0
Query:   74 SSQAARRRTSFLKHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRAEL 206
            SS + + R +   H  AP H RR IMSSPL+KELR +H G+RSIP+R  DEVVV  G H+   G+V+   RKK+ +H++ ITREK+         +T+ + I  S V ITKL LD  R A+++RKAAGRA +
Sbjct:    8 SSDSGKSRKA---HFNAPSHERRRIMSSPLAKELRTKH-GIRSIPIRVDDEVVVMRGRHKGNTGRVLRCYRKKFVVHIDKITREKA-------NGSTVHIGIHPSKVAITKLKLDKDRRALVERKAAGRARV 128          
The following BLAST results are available for this feature:
BLAST of NO13G00800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_018387710.11.400e-2151.52ribosomal protein L24 [Alternaria alternata] >OAG2... [more]
KZM21807.11.900e-2153.54structural constituent of ribosome [Ascochyta rabi... [more]
XP_001797270.12.400e-2150.76hypothetical protein SNOG_06909 [Parastagonospora ... [more]
OAL50808.13.200e-2149.63ribosomal protein L24 [Pyrenochaeta sp. DS3sAY3a][more]
OAK98745.14.200e-2146.85ribosomal protein L24 [Stagonospora sp. SRC1lsM3a][more]
XP_006691267.19.300e-2149.6460S ribosomal protein L26-like protein [Chaetomium... [more]
OSS45766.19.300e-2150.37hypothetical protein B5807_09594 [Epicoccum nigrum... [more]
XP_006220108.13.500e-2051.26PREDICTED: 60S ribosomal protein L26 [Vicugna paco... [more]
KJH45326.13.500e-2051.26ribosomal protein L24 [Dictyocaulus viviparus] >PI... [more]
XP_002630145.14.600e-2047.73C. briggsae CBR-RPL-26 protein [Caenorhabditis bri... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001817NSK001817Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00800.1NO13G00800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596827gene_6932Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100303g2gene8682Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00800.1NO13G00800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00800 ID=NO13G00800|Name=NO13G00800|organism=Nannochloropsis oceanica|type=gene|length=2989bp
ATCGCATCTTCCTTTTACTTTGGTCCATGTGTCCTGTCCTGAGAGCTCGG
GGAGCAACGTTGAAAAAAGGCACGATGTGTACCAAGGCAATCCACCAAGA
TATCTAACATCCACAGTTGCCTTTGACTTGCTTGCTCACTCGCGGGTGGT
GGTCCTAGGCCTTTGCCCTCACCCTTGTCTTACCTGTCCTCTGCCACTCC
GTATTACATCTGGCGATTCATTGGATTGCCTGTCTGGGTTTGGAGGGTGG
CACAAGGGCTTTCCCCCAAAAAAGGAGGACAAGGCTCTCCCAAGAGCCTC
GAGAGCCACCCGCGGTCGCGACAGCAACCCTCGCCTTGCCTCTCCCAGGG
GTCTTGTTATTGCTGCTGCTCGCACTTCATGGACTTGAAAAAGACACTTC
ACACCCACCGCAGAGAATCCACTAAATGCCTGTGGTTGGCAACAGCTATA
TAGAGTTGACAATCGGACCCCAATGGAAACACAACGGGCGCGCGAGGGCT
CGCAATCACGACCTTCGCTTGCCTTGTTGCCCTCGTCCATGTTTGATACT
CACTCAGCAGCACGGCAATGGACCCCATAAAAAAAGAACTCACGTATCCC
TCCTTTCCTATTAATACCTGCATAGAATCGAAGATGATAGGACGACGCTC
CCTTCTTTTCGTGGCTGCCGCGGCCTTGTGCGCGGGCCTCTGCGCCGCGT
TTGTTCCTGGGGCTCCCTTGCCCAGTAGCGCCATCTCCGTCACCAGCACC
ATCAGACGCGAGACCATCGTGgtacgtagacaggcatatcgcaagaagag
atagcacacgagggctagaagaggaaggggtggggtcggttgggctgggt
gggcgcattaattactgttgtagatcatcattcgtgagaggtgccttgga
ttgcagaaattaccccctaaatgccgcattccatttcctactctctccct
aatactcgacttgtagccttccatttctcgataacaccgtcccttccttc
tccttttcttagATGGGCAATCACCGTTCCTCCCAAGCCGCCCGCCGTCG
GACCTCCTTCCTGAAGCACGTCAAGGCTCCCCTACACACCCGCCGCACCA
TCATGAGCTCCCCCTTAAGCAAGGAGCTGCGTGCTGAGCATGGGGGCGTG
AGATCCATTCCGGTGCGCACAGGGGACGAGGTGGTGGTGACGGCAGGCGA
TCACAGGAAGAAAGTGGGGAAGGTCATTGGAGTAGACCGCAAGAAGTACT
ACATCCACGTGGAGGGAATCACGCGCGAGAAATCGGGGGCGAAGGAGGCA
GGGAAGACGAGCACCACCATTCCGGTGCCCATCCGTGCGTCGAGCGTGAA
GATCACCAAGCTGTATCTCGATGCGAGCCGTGAGGCGATCTTGAAGCGGA
AGGCCGCGGGGAGGGCAGAGCTGGCGGCGCGCAAGAATAGTCTCAAGATT
GCGGAGCCAGGGCAAGATCCGGCTTGGACGGAATATCAGACCACCCTGAC
ATCTATTTTGGACGGGTCGGCATAAGCTATATAAGAGGAGGAGGGAGGGA
GGGGAGGAGGGAGTGGAGGAGTGGGACGACCTACACAAAAATCATCTCTC
ATACGTTTTAAATATACACTGTGATGAGAGGGAGGGATAGAATGAGGGAG
GGACATGAGGGTGAATAAATGATGAGGGAGAGGGGCACACGCGACTTGTG
TGCTCATGCATGTCTCTGCCTTTTACTTCATTTTCTGTCTCCTCTAACAT
GCGCGAGAGAGGAAGAGAGTGTTTGTGTGGTGGTGGTGGTAGTGGCCTCC
ACTCTGCCTATGCAGGGGACAGAGCGAACTCACGGAGAGAAGGGTGATAA
TGGAAAGAGGGGCGGGGGGCAATCAAACCAAAGAAGAAAGGAACGAACGA
AGACAAAGATGGGGCTTCGTGGCTGCTGCTGATGCTCGACAAGGCGGTGG
AAAGGTGGTGGCTCACATCCTTTGCTTCTCTTCTCTTGTCTGTAGCGTGA
TACGTACTCTTTCTGGTTCTGGTCCTATGAAGCTTTCTTGGATTTTTCTT
TTCTTCTACCACTATTCCTCCATGTTCTGCTCCTCCTTCCCGCTCTCCTT
CTTGTTCTTCATCTCCCCTTCTCTTCTCGGCCTTCATCCCTCTCTTCTCC
AAGTCCTTCCTCCTCATCTTTCTCTCGCAGCCGTCCCATTGTTAATTTCG
TTCCTTCTGCACATGTAATCATCTTTGCATTAACCTTCCTAGTCTTTCAC
CCACCCACCCCCACGTGTATGTACATGCCTATGGCCATCTTCTTGTCTGC
CACTACCTACCATGAAGTTCCCTTACTCCCGATATATCCTTCCCTCAATT
GCTCTTTCACAACTTGACCCGTCTCCCATCTCCGTGCCACCGCCATATCC
CCCTCCTCCCCCTCCTCAGTCTCTTATATATTCTCCTCCTCCTCTTCCTC
TCCATCATCCTCTACCTCCTCTACCCCACGACCCACCATCCTCCATCATA
CCATCACCACTACGCCCTCCTCCTCATTCCTTCTCCCTCTGTGCTCTCCT
TATCCCTTAAAGTTAAACACCTCCATATCCTTCTTAACCTGTTCTCCTTT
CCTTCTCATCCCCTTCGTAGCAACAGCAGCACCCTTCGGCCCTCTTTCCA
TCATCACATTTTTGCTGCGATCAGTGGCGCTACTGCTGCTGCTTGTACTG
CTGGTGCTACTGATGGTGCTATTGACATTTCTTCTCAGGTTCCTGGTCGT
GGCAGAGGCAGCAGACACAGCAGGCTTGTCGTTGCGGTTGCTGTTGGTGC
TGCTGATGCTGCTCCTATTCACTTCCCTACCACCAGCTTTCACCGCCGCC
GCCGCCGCAGTAGCAGCAGGAGCAGCAGGAGCAGCAGCAAATTTGGCAGC
GGCCAATTTAGTCGTGCTCCTAGTGCTGCGAACACTCTCCTGATTACCCG
CCACACCCCCACCTCCTCGTCCTTCTCTTTTATCCCTCC
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protein sequence of NO13G00800.1

>NO13G00800.1-protein ID=NO13G00800.1-protein|Name=NO13G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MDPIKKELTYPSFPINTCIESKMIGRRSLLFVAAAALCAGLCAAFVPGAP
LPSSAISVTSTIRRETIVMGNHRSSQAARRRTSFLKHVKAPLHTRRTIMS
SPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIH
VEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAA
GRAELAARKNSLKIAEPGQDPAWTEYQTTLTSILDGSA*
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Synonyms
Publications