NO13G00800, NO13G00800 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G00800 vs. NCBI_GenBank
Match: XP_018387710.1 (ribosomal protein L24 [Alternaria alternata] >OAG22289.1 ribosomal protein L24 [Alternaria alternata] >OWY48385.1 ribosomal protein L24 [Alternaria alternata]) HSP 1 Score: 112.8 bits (281), Expect = 1.400e-21 Identity = 68/132 (51.52%), Postives = 84/132 (63.64%), Query Frame = 0 Query: 73 RSSQAARRRTSFLKHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRAE 205 +S A+ RR S H AP RR IMS+PLSKELR +H GVRSIP+R DE+ V G ++ + GKV V R KY +HV GI REKS + ++P+PI S V ITKL LD RE IL+RK+AGR E Sbjct: 5 QSMVASSRRKSRKAHFSAPSSVRRVIMSAPLSKELREKH-GVRSIPIRKDDEITVVRGSNKGREGKVSSVYRLKYCLHVNGIVREKSNGQ-------SVPIPIAPSKVVITKLKLDKDREQILERKSAGREE 128
BLAST of NO13G00800 vs. NCBI_GenBank
Match: KZM21807.1 (structural constituent of ribosome [Ascochyta rabiei]) HSP 1 Score: 112.5 bits (280), Expect = 1.900e-21 Identity = 68/127 (53.54%), Postives = 82/127 (64.57%), Query Frame = 0 Query: 77 AARRRTSFLKHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRA 204 ++ RR S H AP RR IMS+PLSKELR +H GVRSIP+R DE+ V G ++ + GKV V R KY IHV GI REKS + ++PVPI S V ITKL LD RE IL+RK+AGRA Sbjct: 6 SSSRRNSRKAHFSAPSSVRRVIMSAPLSKELREKH-GVRSIPIRKDDEITVVRGSNKGREGKVNSVYRLKYCIHVNGIVREKSNGQ-------SVPVPIAPSKVVITKLKLDKDREQILERKSAGRA 124
BLAST of NO13G00800 vs. NCBI_GenBank
Match: XP_001797270.1 (hypothetical protein SNOG_06909 [Parastagonospora nodorum SN15] >EAT85560.1 hypothetical protein SNOG_06909 [Parastagonospora nodorum SN15]) HSP 1 Score: 112.1 bits (279), Expect = 2.400e-21 Identity = 67/132 (50.76%), Postives = 84/132 (63.64%), Query Frame = 0 Query: 73 RSSQAARRRTSFLKHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRAE 205 RS A+ RR S H AP RR IMS+PLSKELR +H GVRSIP+R DE++V G ++ + GKV V R KY IHV GI REKS + ++P+P+ S V +TKL LD RE IL+RK+ GR E Sbjct: 3 RSIVASSRRKSRKAHFSAPSSVRRVIMSAPLSKELREKH-GVRSIPIRKDDEIMVVRGSNKGREGKVTSVYRLKYCIHVNGIVREKSNGQ-------SVPIPLAPSKVVVTKLKLDKDREKILERKSNGREE 126
BLAST of NO13G00800 vs. NCBI_GenBank
Match: OAL50808.1 (ribosomal protein L24 [Pyrenochaeta sp. DS3sAY3a]) HSP 1 Score: 111.7 bits (278), Expect = 3.200e-21 Identity = 67/135 (49.63%), Postives = 83/135 (61.48%), Query Frame = 0 Query: 77 AARRRTSFLKHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRAELAARKNS 212 A+ RR S H AP RR IMS+PLSKELR +H GVRSIP+R DE+ V G ++ + GK+ V R KY IHV GI REKS + ++P+PI S V +TKL LD RE IL+RK AGR E R + Sbjct: 9 ASSRRKSRKAHFSAPSSVRRVIMSAPLSKELREKH-GVRSIPLRKDDEITVVRGSNKGREGKITSVYRLKYVIHVNGIVREKSNGQ-------SVPIPIAPSKVVVTKLKLDKDREQILERKNAGREEKKKRSEA 135
BLAST of NO13G00800 vs. NCBI_GenBank
Match: OAK98745.1 (ribosomal protein L24 [Stagonospora sp. SRC1lsM3a]) HSP 1 Score: 111.3 bits (277), Expect = 4.200e-21 Identity = 67/143 (46.85%), Postives = 88/143 (61.54%), Query Frame = 0 Query: 69 MGNHRSSQAARRRTSFLKHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRAELAARKNS 212 M +S A+ RR S H AP RR IMS+PLSKELR +H GVRSIPVR DE++V G ++ + GK+ V R KY IHV GI REKS + ++P+P+ S V +TKL LD RE IL+RK GR E +++ + Sbjct: 1 MAKVQSMVASSRRKSRKAHFSAPSSARRVIMSAPLSKELREKH-GVRSIPVRKDDEIMVVRGSNKGREGKITSVYRLKYCIHVNGIVREKSNGQ-------SVPIPLAPSKVVVTKLKLDKDREQILERKKNGREEKKSKQQA 135
BLAST of NO13G00800 vs. NCBI_GenBank
Match: XP_006691267.1 (60S ribosomal protein L26-like protein [Chaetomium thermophilum var. thermophilum DSM 1495] >EGS24025.1 60S ribosomal protein L26-like protein [Chaetomium thermophilum var. thermophilum DSM 1495]) HSP 1 Score: 110.2 bits (274), Expect = 9.300e-21 Identity = 68/137 (49.64%), Postives = 86/137 (62.77%), Query Frame = 0 Query: 73 RSSQAARRRTSFLKHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRAELAARK 210 R + ++ RR + H AP RR IMS+PLSKELR ++ VRSIP+R GDEV + G H+ K GKV V R KY IHVE +TREK+ T T+P+ I S+V ITKL+LD RE IL R AGR ++A K Sbjct: 4 RPTVSSSRRKARKAHFSAPSSVRRVIMSAPLSKELREKY-NVRSIPIRKGDEVQIVRGAHKDKEGKVTSVYRLKYVIHVERVTREKA-------TGQTVPIGIHPSNVVITKLHLDKDRENILARIKAGREQVAKAK 132
BLAST of NO13G00800 vs. NCBI_GenBank
Match: OSS45766.1 (hypothetical protein B5807_09594 [Epicoccum nigrum]) HSP 1 Score: 110.2 bits (274), Expect = 9.300e-21 Identity = 68/135 (50.37%), Postives = 84/135 (62.22%), Query Frame = 0 Query: 77 AARRRTSFLKHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRAELAARKNS 212 ++ RR S H AP RR IMS+PLSKELR ++ GVRSIPVR DE+ V G ++ + GK+ V R KY IHV GI REKS + ++PVPI S V ITKL LD RE IL+RK AGRA +K + Sbjct: 6 SSSRRNSRKAHFSAPSSVRRVIMSAPLSKELREKY-GVRSIPVRKDDEIQVVRGSNKGREGKINSVYRLKYCIHVNGIVREKSNGQ-------SVPVPIATSKVVITKLKLDKDREQILERKGAGRAAKKEKKEN 132
BLAST of NO13G00800 vs. NCBI_GenBank
Match: XP_006220108.1 (PREDICTED: 60S ribosomal protein L26 [Vicugna pacos]) HSP 1 Score: 108.2 bits (269), Expect = 3.500e-20 Identity = 61/119 (51.26%), Postives = 79/119 (66.39%), Query Frame = 0 Query: 86 KHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRAE 205 +H AP H RR IMS+PL+KELRA+H G+RSIP+R DEV+V G HR G+VI RKK+ IHV+ ITREK +T+ + I S V +TKL LD R +++RKAAGRA+ Sbjct: 17 QHFNAPSHERRKIMSAPLTKELRAKH-GIRSIPIRVDDEVIVMRGRHRGNTGRVIRCYRKKFVIHVDKITREKG-------NGSTVHIGIHPSKVALTKLKLDKDRRDLVERKAAGRAK 127
BLAST of NO13G00800 vs. NCBI_GenBank
Match: KJH45326.1 (ribosomal protein L24 [Dictyocaulus viviparus] >PIO72480.1 ribosomal protein L24 [Teladorsagia circumcincta]) HSP 1 Score: 108.2 bits (269), Expect = 3.500e-20 Identity = 61/119 (51.26%), Postives = 79/119 (66.39%), Query Frame = 0 Query: 86 KHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRAE 205 +H AP H RR IMS+PL+KELRA+H G+RSIP+R DEV+V G HR G+VI RKK+ IHV+ ITREK +T+ + I S V +TKL LD R +++RKAAGRA+ Sbjct: 17 QHFNAPSHERRRIMSAPLTKELRAKH-GIRSIPIRVDDEVIVMRGRHRGNTGRVIRCYRKKFVIHVDKITREKG-------NGSTVHIGIHPSKVALTKLKLDKDRRDLVERKAAGRAK 127
BLAST of NO13G00800 vs. NCBI_GenBank
Match: XP_002630145.1 (C. briggsae CBR-RPL-26 protein [Caenorhabditis briggsae] >CAP22078.1 Protein CBR-RPL-26 [Caenorhabditis briggsae] >PIC44506.1 hypothetical protein B9Z55_004851 [Caenorhabditis nigoni]) HSP 1 Score: 107.8 bits (268), Expect = 4.600e-20 Identity = 63/132 (47.73%), Postives = 85/132 (64.39%), Query Frame = 0 Query: 74 SSQAARRRTSFLKHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRAEL 206 SS + + R + H AP H RR IMSSPL+KELR +H G+RSIP+R DEVVV G H+ G+V+ RKK+ +H++ ITREK+ +T+ + I S V ITKL LD R A+++RKAAGRA + Sbjct: 8 SSDSGKSRKA---HFNAPSHERRRIMSSPLAKELRTKH-GIRSIPIRVDDEVVVMRGRHKGNTGRVLRCYRKKFVVHIDKITREKA-------NGSTVHIGIHPSKVAITKLKLDKDRRALVERKAAGRARV 128 The following BLAST results are available for this feature:
BLAST of NO13G00800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G00800 ID=NO13G00800|Name=NO13G00800|organism=Nannochloropsis oceanica|type=gene|length=2989bpback to top protein sequence of NO13G00800.1 >NO13G00800.1-protein ID=NO13G00800.1-protein|Name=NO13G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bpback to top Synonyms
Publications
|