NO13G00800.1, NO13G00800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00800.1
Unique NameNO13G00800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2748
Alignment locationchr13:262747..265735 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:262747..265735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00800.1 vs.
Match: XP_005853828.1 (large subunit ribosomal protein L26e [Nannochloropsis gaditana CCMP526]; EKU22531.1 large subunit ribosomal protein L26e [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 360.1 bits (923), Expect = 5.100e-96
Identity = 189/215 (87.91%), Postives = 201/215 (93.49%), Query Frame = 0 
Query:   24 IGRRSLLFVAAAALCAGLCAAFVPGAPLPSSAISVTSTIRRETIVMGNHRSSQAARRRTSFLKHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAAGRAELAARKNSLKIAEPGQDPAWTEYQTTLTSILDGSA 239
            +GRRSL+ V  AA+CAGLC AFVP APLPS A S +ST RR+TIVMGNHRSSQAARRRTSFLKHVKAPLH RRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREK+G KEAGKTSTTIPVPIRASSV+ITKLYLD SREAILKR+A GRAELAARKN++++AEPGQDPAW EYQTTLTSILDGSA
Sbjct:    1 MGRRSLVLVTVAAICAGLCTAFVPSAPLPSCA-SGSSTSRRQTIVMGNHRSSQAARRRTSFLKHVKAPLHKRRTIMSSPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKAGGKEAGKTSTTIPVPIRASSVRITKLYLDKSREAILKRRAEGRAELAARKNNIQLAEPGQDPAWAEYQTTLTSILDGSA 214
The following BLAST results are available for this feature:
BLAST of NO13G00800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853828.15.100e-9687.91large subunit ribosomal protein L26e [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00800NO13G00800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00800.1NO13G00800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00800.1.cds1NO13G00800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00800.1.cds2NO13G00800.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00800.1 ID=NO13G00800.1|Name=NO13G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2748bp
ATCGCATCTTCCTTTTACTTTGGTCCATGTGTCCTGTCCTGAGAGCTCGG
GGAGCAACGTTGAAAAAAGGCACGATGTGTACCAAGGCAATCCACCAAGA
TATCTAACATCCACAGTTGCCTTTGACTTGCTTGCTCACTCGCGGGTGGT
GGTCCTAGGCCTTTGCCCTCACCCTTGTCTTACCTGTCCTCTGCCACTCC
GTATTACATCTGGCGATTCATTGGATTGCCTGTCTGGGTTTGGAGGGTGG
CACAAGGGCTTTCCCCCAAAAAAGGAGGACAAGGCTCTCCCAAGAGCCTC
GAGAGCCACCCGCGGTCGCGACAGCAACCCTCGCCTTGCCTCTCCCAGGG
GTCTTGTTATTGCTGCTGCTCGCACTTCATGGACTTGAAAAAGACACTTC
ACACCCACCGCAGAGAATCCACTAAATGCCTGTGGTTGGCAACAGCTATA
TAGAGTTGACAATCGGACCCCAATGGAAACACAACGGGCGCGCGAGGGCT
CGCAATCACGACCTTCGCTTGCCTTGTTGCCCTCGTCCATGTTTGATACT
CACTCAGCAGCACGGCAATGGACCCCATAAAAAAAGAACTCACGTATCCC
TCCTTTCCTATTAATACCTGCATAGAATCGAAGATGATAGGACGACGCTC
CCTTCTTTTCGTGGCTGCCGCGGCCTTGTGCGCGGGCCTCTGCGCCGCGT
TTGTTCCTGGGGCTCCCTTGCCCAGTAGCGCCATCTCCGTCACCAGCACC
ATCAGACGCGAGACCATCGTGATGGGCAATCACCGTTCCTCCCAAGCCGC
CCGCCGTCGGACCTCCTTCCTGAAGCACGTCAAGGCTCCCCTACACACCC
GCCGCACCATCATGAGCTCCCCCTTAAGCAAGGAGCTGCGTGCTGAGCAT
GGGGGCGTGAGATCCATTCCGGTGCGCACAGGGGACGAGGTGGTGGTGAC
GGCAGGCGATCACAGGAAGAAAGTGGGGAAGGTCATTGGAGTAGACCGCA
AGAAGTACTACATCCACGTGGAGGGAATCACGCGCGAGAAATCGGGGGCG
AAGGAGGCAGGGAAGACGAGCACCACCATTCCGGTGCCCATCCGTGCGTC
GAGCGTGAAGATCACCAAGCTGTATCTCGATGCGAGCCGTGAGGCGATCT
TGAAGCGGAAGGCCGCGGGGAGGGCAGAGCTGGCGGCGCGCAAGAATAGT
CTCAAGATTGCGGAGCCAGGGCAAGATCCGGCTTGGACGGAATATCAGAC
CACCCTGACATCTATTTTGGACGGGTCGGCATAAGCTATATAAGAGGAGG
AGGGAGGGAGGGGAGGAGGGAGTGGAGGAGTGGGACGACCTACACAAAAA
TCATCTCTCATACGTTTTAAATATACACTGTGATGAGAGGGAGGGATAGA
ATGAGGGAGGGACATGAGGGTGAATAAATGATGAGGGAGAGGGGCACACG
CGACTTGTGTGCTCATGCATGTCTCTGCCTTTTACTTCATTTTCTGTCTC
CTCTAACATGCGCGAGAGAGGAAGAGAGTGTTTGTGTGGTGGTGGTGGTA
GTGGCCTCCACTCTGCCTATGCAGGGGACAGAGCGAACTCACGGAGAGAA
GGGTGATAATGGAAAGAGGGGCGGGGGGCAATCAAACCAAAGAAGAAAGG
AACGAACGAAGACAAAGATGGGGCTTCGTGGCTGCTGCTGATGCTCGACA
AGGCGGTGGAAAGGTGGTGGCTCACATCCTTTGCTTCTCTTCTCTTGTCT
GTAGCGTGATACGTACTCTTTCTGGTTCTGGTCCTATGAAGCTTTCTTGG
ATTTTTCTTTTCTTCTACCACTATTCCTCCATGTTCTGCTCCTCCTTCCC
GCTCTCCTTCTTGTTCTTCATCTCCCCTTCTCTTCTCGGCCTTCATCCCT
CTCTTCTCCAAGTCCTTCCTCCTCATCTTTCTCTCGCAGCCGTCCCATTG
TTAATTTCGTTCCTTCTGCACATGTAATCATCTTTGCATTAACCTTCCTA
GTCTTTCACCCACCCACCCCCACGTGTATGTACATGCCTATGGCCATCTT
CTTGTCTGCCACTACCTACCATGAAGTTCCCTTACTCCCGATATATCCTT
CCCTCAATTGCTCTTTCACAACTTGACCCGTCTCCCATCTCCGTGCCACC
GCCATATCCCCCTCCTCCCCCTCCTCAGTCTCTTATATATTCTCCTCCTC
CTCTTCCTCTCCATCATCCTCTACCTCCTCTACCCCACGACCCACCATCC
TCCATCATACCATCACCACTACGCCCTCCTCCTCATTCCTTCTCCCTCTG
TGCTCTCCTTATCCCTTAAAGTTAAACACCTCCATATCCTTCTTAACCTG
TTCTCCTTTCCTTCTCATCCCCTTCGTAGCAACAGCAGCACCCTTCGGCC
CTCTTTCCATCATCACATTTTTGCTGCGATCAGTGGCGCTACTGCTGCTG
CTTGTACTGCTGGTGCTACTGATGGTGCTATTGACATTTCTTCTCAGGTT
CCTGGTCGTGGCAGAGGCAGCAGACACAGCAGGCTTGTCGTTGCGGTTGC
TGTTGGTGCTGCTGATGCTGCTCCTATTCACTTCCCTACCACCAGCTTTC
ACCGCCGCCGCCGCCGCAGTAGCAGCAGGAGCAGCAGGAGCAGCAGCAAA
TTTGGCAGCGGCCAATTTAGTCGTGCTCCTAGTGCTGCGAACACTCTCCT
GATTACCCGCCACACCCCCACCTCCTCGTCCTTCTCTTTTATCCCTCC
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protein sequence of NO13G00800.1

>NO13G00800.1-protein ID=NO13G00800.1-protein|Name=NO13G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MDPIKKELTYPSFPINTCIESKMIGRRSLLFVAAAALCAGLCAAFVPGAP
LPSSAISVTSTIRRETIVMGNHRSSQAARRRTSFLKHVKAPLHTRRTIMS
SPLSKELRAEHGGVRSIPVRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIH
VEGITREKSGAKEAGKTSTTIPVPIRASSVKITKLYLDASREAILKRKAA
GRAELAARKNSLKIAEPGQDPAWTEYQTTLTSILDGSA*
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mRNA from alignment at chr13:262747..265735+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00800.1 ID=NO13G00800.1|Name=NO13G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2989bp|location=Sequence derived from alignment at chr13:262747..265735+ (Nannochloropsis oceanica)
ATCGCATCTTCCTTTTACTTTGGTCCATGTGTCCTGTCCTGAGAGCTCGG
GGAGCAACGTTGAAAAAAGGCACGATGTGTACCAAGGCAATCCACCAAGA
TATCTAACATCCACAGTTGCCTTTGACTTGCTTGCTCACTCGCGGGTGGT
GGTCCTAGGCCTTTGCCCTCACCCTTGTCTTACCTGTCCTCTGCCACTCC
GTATTACATCTGGCGATTCATTGGATTGCCTGTCTGGGTTTGGAGGGTGG
CACAAGGGCTTTCCCCCAAAAAAGGAGGACAAGGCTCTCCCAAGAGCCTC
GAGAGCCACCCGCGGTCGCGACAGCAACCCTCGCCTTGCCTCTCCCAGGG
GTCTTGTTATTGCTGCTGCTCGCACTTCATGGACTTGAAAAAGACACTTC
ACACCCACCGCAGAGAATCCACTAAATGCCTGTGGTTGGCAACAGCTATA
TAGAGTTGACAATCGGACCCCAATGGAAACACAACGGGCGCGCGAGGGCT
CGCAATCACGACCTTCGCTTGCCTTGTTGCCCTCGTCCATGTTTGATACT
CACTCAGCAGCACGGCAATGGACCCCATAAAAAAAGAACTCACGTATCCC
TCCTTTCCTATTAATACCTGCATAGAATCGAAGATGATAGGACGACGCTC
CCTTCTTTTCGTGGCTGCCGCGGCCTTGTGCGCGGGCCTCTGCGCCGCGT
TTGTTCCTGGGGCTCCCTTGCCCAGTAGCGCCATCTCCGTCACCAGCACC
ATCAGACGCGAGACCATCGTGGTACGTAGACAGGCATATCGCAAGAAGAG
ATAGCACACGAGGGCTAGAAGAGGAAGGGGTGGGGTCGGTTGGGCTGGGT
GGGCGCATTAATTACTGTTGTAGATCATCATTCGTGAGAGGTGCCTTGGA
TTGCAGAAATTACCCCCTAAATGCCGCATTCCATTTCCTACTCTCTCCCT
AATACTCGACTTGTAGCCTTCCATTTCTCGATAACACCGTCCCTTCCTTC
TCCTTTTCTTAGATGGGCAATCACCGTTCCTCCCAAGCCGCCCGCCGTCG
GACCTCCTTCCTGAAGCACGTCAAGGCTCCCCTACACACCCGCCGCACCA
TCATGAGCTCCCCCTTAAGCAAGGAGCTGCGTGCTGAGCATGGGGGCGTG
AGATCCATTCCGGTGCGCACAGGGGACGAGGTGGTGGTGACGGCAGGCGA
TCACAGGAAGAAAGTGGGGAAGGTCATTGGAGTAGACCGCAAGAAGTACT
ACATCCACGTGGAGGGAATCACGCGCGAGAAATCGGGGGCGAAGGAGGCA
GGGAAGACGAGCACCACCATTCCGGTGCCCATCCGTGCGTCGAGCGTGAA
GATCACCAAGCTGTATCTCGATGCGAGCCGTGAGGCGATCTTGAAGCGGA
AGGCCGCGGGGAGGGCAGAGCTGGCGGCGCGCAAGAATAGTCTCAAGATT
GCGGAGCCAGGGCAAGATCCGGCTTGGACGGAATATCAGACCACCCTGAC
ATCTATTTTGGACGGGTCGGCATAAGCTATATAAGAGGAGGAGGGAGGGA
GGGGAGGAGGGAGTGGAGGAGTGGGACGACCTACACAAAAATCATCTCTC
ATACGTTTTAAATATACACTGTGATGAGAGGGAGGGATAGAATGAGGGAG
GGACATGAGGGTGAATAAATGATGAGGGAGAGGGGCACACGCGACTTGTG
TGCTCATGCATGTCTCTGCCTTTTACTTCATTTTCTGTCTCCTCTAACAT
GCGCGAGAGAGGAAGAGAGTGTTTGTGTGGTGGTGGTGGTAGTGGCCTCC
ACTCTGCCTATGCAGGGGACAGAGCGAACTCACGGAGAGAAGGGTGATAA
TGGAAAGAGGGGCGGGGGGCAATCAAACCAAAGAAGAAAGGAACGAACGA
AGACAAAGATGGGGCTTCGTGGCTGCTGCTGATGCTCGACAAGGCGGTGG
AAAGGTGGTGGCTCACATCCTTTGCTTCTCTTCTCTTGTCTGTAGCGTGA
TACGTACTCTTTCTGGTTCTGGTCCTATGAAGCTTTCTTGGATTTTTCTT
TTCTTCTACCACTATTCCTCCATGTTCTGCTCCTCCTTCCCGCTCTCCTT
CTTGTTCTTCATCTCCCCTTCTCTTCTCGGCCTTCATCCCTCTCTTCTCC
AAGTCCTTCCTCCTCATCTTTCTCTCGCAGCCGTCCCATTGTTAATTTCG
TTCCTTCTGCACATGTAATCATCTTTGCATTAACCTTCCTAGTCTTTCAC
CCACCCACCCCCACGTGTATGTACATGCCTATGGCCATCTTCTTGTCTGC
CACTACCTACCATGAAGTTCCCTTACTCCCGATATATCCTTCCCTCAATT
GCTCTTTCACAACTTGACCCGTCTCCCATCTCCGTGCCACCGCCATATCC
CCCTCCTCCCCCTCCTCAGTCTCTTATATATTCTCCTCCTCCTCTTCCTC
TCCATCATCCTCTACCTCCTCTACCCCACGACCCACCATCCTCCATCATA
CCATCACCACTACGCCCTCCTCCTCATTCCTTCTCCCTCTGTGCTCTCCT
TATCCCTTAAAGTTAAACACCTCCATATCCTTCTTAACCTGTTCTCCTTT
CCTTCTCATCCCCTTCGTAGCAACAGCAGCACCCTTCGGCCCTCTTTCCA
TCATCACATTTTTGCTGCGATCAGTGGCGCTACTGCTGCTGCTTGTACTG
CTGGTGCTACTGATGGTGCTATTGACATTTCTTCTCAGGTTCCTGGTCGT
GGCAGAGGCAGCAGACACAGCAGGCTTGTCGTTGCGGTTGCTGTTGGTGC
TGCTGATGCTGCTCCTATTCACTTCCCTACCACCAGCTTTCACCGCCGCC
GCCGCCGCAGTAGCAGCAGGAGCAGCAGGAGCAGCAGCAAATTTGGCAGC
GGCCAATTTAGTCGTGCTCCTAGTGCTGCGAACACTCTCCTGATTACCCG
CCACACCCCCACCTCCTCGTCCTTCTCTTTTATCCCTCC
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Coding sequence (CDS) from alignment at chr13:262747..265735+

>NO13G00800.1 ID=NO13G00800.1|Name=NO13G00800.1|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at chr13:262747..265735+ (Nannochloropsis oceanica)
ATGGACCCCATAAAAAAAGAACTCACGTATCCCTCCTTTCCTATTAATAC
CTGCATAGAATCGAAGATGATAGGACGACGCTCCCTTCTTTTCGTGGCTG
CCGCGGCCTTGTGCGCGGGCCTCTGCGCCGCGTTTGTTCCTGGGGCTCCC
TTGCCCAGTAGCGCCATCTCCGTCACCAGCACCATCAGACGCGAGACCAT
CGTGATGGGCAATCACCGTTCCTCCCAAGCCGCCCGCCGTCGGACCTCCT
TCCTGAAGCACGTCAAGGCTCCCCTACACACCCGCCGCACCATCATGAGC
TCCCCCTTAAGCAAGGAGCTGCGTGCTGAGCATGGGGGCGTGAGATCCAT
TCCGGTGCGCACAGGGGACGAGGTGGTGGTGACGGCAGGCGATCACAGGA
AGAAAGTGGGGAAGGTCATTGGAGTAGACCGCAAGAAGTACTACATCCAC
GTGGAGGGAATCACGCGCGAGAAATCGGGGGCGAAGGAGGCAGGGAAGAC
GAGCACCACCATTCCGGTGCCCATCCGTGCGTCGAGCGTGAAGATCACCA
AGCTGTATCTCGATGCGAGCCGTGAGGCGATCTTGAAGCGGAAGGCCGCG
GGGAGGGCAGAGCTGGCGGCGCGCAAGAATAGTCTCAAGATTGCGGAGCC
AGGGCAAGATCCGGCTTGGACGGAATATCAGACCACCCTGACATCTATTT
TGGACGGGTCGGCATAA
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Synonyms
Publications