NO13G00770, NO13G00770 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G00770 vs. NCBI_GenBank
Match: XP_005855323.1 (rna-binding s4 [Nannochloropsis gaditana CCMP526] >EKU21042.1 rna-binding s4 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 444.5 bits (1142), Expect = 2.900e-121 Identity = 226/274 (82.48%), Postives = 253/274 (92.34%), Query Frame = 0 Query: 63 GGGNSLNREELRKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337 GGGNS+NREELRKSLVAEG++DILAARAVEAADKA++ WEMQV++FCRPPEVAT+ RVL RVADL+IT DGGFPQAERQRVFF+R +DY +D+E R+ER Y ++SVEGNFIFD+A+HRDFLGALLGTGI REKVGDILLQGERGAHV++AP+VAEYV+ +LA+VRSVPVKNK I L +LGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIE GDVLVNWKE SAN+ LKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKF+ Sbjct: 52 GGGNSVNREELRKSLVAEGLDDILAARAVEAADKAVSIWEMQVIDFCRPPEVATMTRVLGRVADLSITCDGGFPQAERQRVFFSRALDYAVDEEDARKERGGYLAAISVEGNFIFDRATHRDFLGALLGTGIAREKVGDILLQGERGAHVVVAPDVAEYVVLSLAAVRSVPVKNKPIALADLGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIEGGDVLVNWKEITSANAQLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFV 325
BLAST of NO13G00770 vs. NCBI_GenBank
Match: EWM21747.1 (photosystem ii s4 domain protein [Nannochloropsis gaditana]) HSP 1 Score: 298.5 bits (763), Expect = 2.600e-77 Identity = 148/193 (76.68%), Postives = 175/193 (90.67%), Query Frame = 0 Query: 63 GGGNSLNREELRKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQ 256 GGGNS+NREELRKSLVAEG++DILAARAVEAADKA++ WEMQV++FCRPPEVAT+ RVL RVADL+IT GGFPQAERQRVFF+R +DY +D+E R+ER Y ++SVEGNFIFD+A+HRDFLGALLGTGI REKVGDILLQGERGAHV++AP+VAEYV+ +LA+VRSVPVKNK I L +LGVRPPVTKE++ Sbjct: 52 GGGNSVNREELRKSLVAEGLDDILAARAVEAADKAVSIWEMQVIDFCRPPEVATMTRVLGRVADLSITCGGGFPQAERQRVFFSRALDYAVDEEDARKERGGYLAAISVEGNFIFDRATHRDFLGALLGTGIAREKVGDILLQGERGAHVVVAPDVAEYVVLSLAAVRSVPVKNKPIALADLGVRPPVTKEVR 244
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_096730745.1 (photosystem II S4 domain protein [Nostoc carneum] >BAY33641.1 RNA-binding S4 [Nostoc carneum NIES-2107]) HSP 1 Score: 264.6 bits (675), Expect = 4.100e-67 Identity = 143/270 (52.96%), Postives = 191/270 (70.74%), Query Frame = 0 Query: 68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337 L REEL K GVE+ AR ++ A++A+ WE+ + +F PPE+A I+RV R+ ++ + GG+PQAERQR+ AR + LDQ Q T++ + GNF+FD A+HRDFLGA+LGTGI REK GDI++ GERGA I+APE+AE++ L VRSVPVK + I + EL VR P KEM +VEAS+RLDA+ASAG GMSRSK+ D+I+SGDV VNWKE A+S +K GD++ IRGKGRLEV EV T K ++RV++T+F+ Sbjct: 2 LPREELLK-----GVENRDSVARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVQLVAWGGYPQAERQRLAIAR-AEIPLDQSQ------VAVTALEIAGNFLFDTATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVAPELAEFLEMNLKQVRSVPVKTQPIEISELKVREPKKKEMTTVEASLRLDAIASAGFGMSRSKMVDLIDSGDVRVNWKEVSQASSQVKTGDLIAIRGKGRLEVGEVAVTKKDRYRVQLTRFM 259
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_045867901.1 (MULTISPECIES: photosystem II S4 domain protein [Nostocales] >EKF04672.1 hypothetical protein FDUTEX481_00829 [Tolypothrix sp. PCC 7601] >BAY92112.1 RNA-binding S4 domain-containing protein [Fremyella diplosiphon NIES-3275]) HSP 1 Score: 263.5 bits (672), Expect = 9.200e-67 Identity = 141/269 (52.42%), Postives = 191/269 (71.00%), Query Frame = 0 Query: 68 LNREELRKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337 L REEL KS+ E + + AR ++ A++A+ WE+ + +F PPE+A I+RV R+ ++ + GG+PQAERQRV AR + LD Q T++ + GNF+FD A+HRDFLGA+LGTGI REK GDI++ GERGA I+APE+AE++ L VRSVPVK + I + EL VR P KEM +VEAS+RLDA+ASAG GMSRSK+ D+I+SGDV VNWKE A+S +K GD++ IRGKGRLEV EV T K ++RV++T+++ Sbjct: 2 LPREELLKSV--ENRDSV--ARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVQLVAWGGYPQAERQRVAIAR-AELPLDPSQ------VALTALEIAGNFLFDTATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVAPELAEFLEMNLKQVRSVPVKTQPIEISELKVREPKKKEMTTVEASLRLDAIASAGFGMSRSKMVDLIDSGDVRVNWKEVSQASSQVKTGDLIAIRGKGRLEVGEVAITKKDRYRVQLTRYM 259
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_096603847.1 (photosystem II S4 domain protein [Calothrix sp. NIES-2100] >BAY25075.1 RNA-binding S4 domain-containing protein [Calothrix sp. NIES-2100]) HSP 1 Score: 263.5 bits (672), Expect = 9.200e-67 Identity = 140/269 (52.04%), Postives = 191/269 (71.00%), Query Frame = 0 Query: 68 LNREELRKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337 L REEL KS+ E + + AR ++ A++A+ WE+ + +F PPE+A I+RV R+ ++ + GG+PQAERQR+ AR + LDQ Q ++ + GNF+FD A+HRDFLGA+LGTGI REK GDI++ GERGA VI+APE+ E++ +L VRSVPVK + I EL VR P KEM +VEAS+RLDA+ASAG GMSRSK+ D+I+SGDV VNWKE A+S +K GD++ IRGKGRLEV EV T K ++RV++T+++ Sbjct: 2 LPREELLKSV--ENRDSV--ARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVQLLAWGGYPQAERQRLAIAR-AEIPLDQSQ------VALVALEIAGNFLFDTATHRDFLGAMLGTGIVREKTGDIIVLGERGAQVIVAPELTEFLEMSLKQVRSVPVKTQRIDASELKVREPKKKEMTTVEASLRLDAIASAGFGMSRSKMVDLIDSGDVRVNWKEVSQASSQVKTGDLIAIRGKGRLEVGEVAVTKKDRYRVQLTRYV 259
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_096581111.1 (MULTISPECIES: photosystem II S4 domain protein [Nostocales] >BAZ01505.1 RNA-binding S4 [Tolypothrix tenuis PCC 7101] >BAZ74572.1 RNA-binding S4 [Aulosira laxa NIES-50]) HSP 1 Score: 263.5 bits (672), Expect = 9.200e-67 Identity = 142/270 (52.59%), Postives = 191/270 (70.74%), Query Frame = 0 Query: 68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337 L REEL K GVE+ AR ++ A++A+ WE+ + +F PPE+A I+RV R+ ++ + GG+PQAERQR+ AR + LDQ Q T++ + GNF+FD A+HRDFLGA+LGTGI REK GDI++ GERGA I+APE+AE++ L VRSVPVK + I + EL VR P KEM +VEAS+RLDA+ASAG GMSRSK+ D+I+SGDV VNWK+ A+S +K GD++ IRGKGRLEV EV T K ++RV++T+F+ Sbjct: 2 LPREELLK-----GVENRDSVARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVQLVAWGGYPQAERQRLAIAR-AEIPLDQSQ------VAVTALEIAGNFLFDTATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVAPELAEFLEMNLKQVRSVPVKTQPIEISELKVREPKKKEMTTVEASLRLDAIASAGFGMSRSKMVDLIDSGDVRVNWKDVSQASSQVKTGDLIAIRGKGRLEVGEVAVTKKDRYRVQLTRFM 259
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_073601386.1 (photosystem II S4 domain protein [Hydrococcus rivularis] >OKH19677.1 photosystem II S4 domain protein [Hydrococcus rivularis NIES-593]) HSP 1 Score: 263.1 bits (671), Expect = 1.200e-66 Identity = 141/269 (52.42%), Postives = 192/269 (71.38%), Query Frame = 0 Query: 68 LNREELRKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337 L REEL K + E E+I AR V+ A++AL WEM + +F PP +A +++ R+ ++ GG+PQAERQR+ AR+ LD Q T++ + GNF+FD A+HRDFLGA+LGTGI R+KVGDI++ GERGA V++ PE+AE++ T+L VRSVPVK + I L EL VRPP KE+ +VEASMRLDA+ASAG GMSRSK+ D I +GDV VNWKE A+ +K GD++++RGKGRL+VNEV+ T K ++RV++T+FI Sbjct: 2 LPREELLKGV--ENREEI--ARIVDKAEQALRTWEMALTDFLSPPVLAEAQQIFGRLTEIEYIAWGGYPQAERQRIGMARS-HIRLDPSQ------IQITALDIAGNFLFDPANHRDFLGAILGTGIVRDKVGDIIVLGERGAQVLVVPEIAEFLETSLVQVRSVPVKTQRIDLSELKVRPPQKKEITTVEASMRLDAIASAGFGMSRSKMADAIAAGDVRVNWKEVTQASYTVKIGDLISVRGKGRLQVNEVDLTKKQRYRVQLTRFI 259
BLAST of NO13G00770 vs. NCBI_GenBank
Match: OKY70212.1 (photosystem II S4 domain protein [Limnothrix sp. CACIAM 69d]) HSP 1 Score: 262.7 bits (670), Expect = 1.600e-66 Identity = 136/263 (51.71%), Postives = 185/263 (70.34%), Query Frame = 0 Query: 74 RKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337 R++L+ ARA++ AD++L WE V +F PPE+A I+ V +A++ P GG+PQAERQRV FAR+ EL + E ++ + GNF+FD A+HRDFLGALLGTG+ R+KVGD+L+QGERGA ++APEV E++ +L VRSVPVK +AIPL EL VR P KEM +VEAS+RLDA+ASAG G+SRSK+ + I GDV VNWK+ S + LLK GD+V + GKGRL + E+ TT K ++RV++T+F+ Sbjct: 4 RETLLKRATHRDTIARAIDLADQSLKTWEPAVSDFLSPPEIADIQTVFSGLAEVVFMPWGGYPQAERQRVAFARS---ELPLVTDAIE----VAALEIAGNFLFDPATHRDFLGALLGTGLVRDKVGDLLVQGERGAQALVAPEVVEFLELSLTQVRSVPVKTRAIPLSELKVREPKKKEMTTVEASLRLDAIASAGFGISRSKMAEAISGGDVRVNWKDITSPSHLLKSGDLVVLAGKGRLSIGEIATTKKDRYRVQLTRFV 259
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_068381033.1 (photosystem II S4 domain protein [Leptolyngbya sp. NIES-3755] >BAU10440.1 RNA-binding protein S4 [Leptolyngbya sp. NIES-3755]) HSP 1 Score: 261.9 bits (668), Expect = 2.700e-66 Identity = 139/269 (51.67%), Postives = 190/269 (70.63%), Query Frame = 0 Query: 68 LNREELRKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337 L RE+L K + E E I AR ++ A+KA+ WE+ +F PPE+A ++R R+ ++ + GG+PQAERQRV AR+ + LD Q ++ + GNF+FD+A+HRDFLGALLGTGI REKVGDI++ GERGA I+ PE+ +++ T+L VRSVPVK + IP +EL +R P KEM +VEASMRLDA+ASAG GMSRSK+ +MI +GDV VNWKET S + +K GD++ IRGKGR+EV EV T K ++RV++T+F+ Sbjct: 2 LPREDLLKGV--ENRETI--ARVIDQAEKAIKTWEVVTSDFLSPPELAEVQRSFSRLTEVQLIAWGGYPQAERQRVAIARS-EIPLDASQ------VELAALDIAGNFLFDQATHRDFLGALLGTGIVREKVGDIIVLGERGAQAIVTPELVDFLQTSLNQVRSVPVKVEPIPFEELKIREPKKKEMTTVEASMRLDAIASAGFGMSRSKMAEMISAGDVRVNWKETTSTSYSVKSGDLIAIRGKGRVEVGEVMVTKKDRYRVQLTRFV 259
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_069068203.1 (photosystem II S4 domain protein [Nostoc sp. KVJ20] >ODH02887.1 photosystem II S4 domain protein [Nostoc sp. KVJ20]) HSP 1 Score: 261.5 bits (667), Expect = 3.500e-66 Identity = 138/270 (51.11%), Postives = 190/270 (70.37%), Query Frame = 0 Query: 68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337 L REEL K GVE+ AR ++ A++A+ WE+ + +F PPE+A I+RV R+ ++ +T GG+PQAERQR+ AR+ + LDQ Q +V + GNF+FD ASHRDFLGA+LGTGI REK GD+++ GERGA I+APE+ E++ +L VRSVPVK + I + EL VR P KE+ +VEAS+RLDA+ASAG GMSRSK+ D I++GDV VNWKE A+S +K GD++ IR KGRLEV E+ T K ++RV++T+++ Sbjct: 2 LPREELLK-----GVENRDSVARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFNRLTEVQLTAWGGYPQAERQRIVIARS-ELPLDQSQ------VSLVAVEIAGNFLFDTASHRDFLGAMLGTGIVREKTGDVIVLGERGAQAIVAPELVEFLEMSLKQVRSVPVKTQQIEVTELRVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDFIDAGDVRVNWKEVTQASSQVKSGDLIAIRSKGRLEVGEIAVTKKDRYRVQLTRYV 259 The following BLAST results are available for this feature:
BLAST of NO13G00770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G00770 ID=NO13G00770|Name=NO13G00770|organism=Nannochloropsis oceanica|type=gene|length=2014bpback to top protein sequence of NO13G00770.1 >NO13G00770.1-protein ID=NO13G00770.1-protein|Name=NO13G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bpback to top protein sequence of NO13G00770.2 >NO13G00770.2-protein ID=NO13G00770.2-protein|Name=NO13G00770.2|organism=Nannochloropsis oceanica|type=polypeptide|length=256bpback to top protein sequence of NO13G00770.3 >NO13G00770.3-protein ID=NO13G00770.3-protein|Name=NO13G00770.3|organism=Nannochloropsis oceanica|type=polypeptide|length=269bpback to top Synonyms
Publications
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