NO13G00770.3, NO13G00770.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00770.3
Unique NameNO13G00770.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1848
Alignment locationchr13:254485..256498 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:254485..256498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00770.3 vs.
Match: EWM21747.1 (photosystem ii s4 domain protein [Nannochloropsis gaditana])

HSP 1 Score: 309.3 bits (791), Expect = 1.200e-80
Identity = 167/251 (66.53%), Postives = 199/251 (79.28%), Query Frame = 0 
Query:   17 RASPHLSPRLLLLFLIVTITATHAFLPSYLPSFSSSHSRSPTCLNAGGGNSLNREELRKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEVRSGIGKGRERADG 268
            R  P    RLLLL ++  +    AF+     S   +  R+P     GGGNS+NREELRKSLVAEG++DILAARAVEAADKA++ WEMQV++FCRPPEVAT+ RVL RVADL+IT  GGFPQAERQRVFF+R +DY +D+E  R+ER  Y  ++SVEGNFIFD+A+HRDFLGALLGTGI REKVGDILLQGERGAHV++AP+VAEYV+ +LA+VRSVPVKNK I L +LGVRPPVTKEVR G+   RER  G
Sbjct:   11 RRGPLNHVRLLLLAVLAIMVPVPAFV-----SIFPAPPRAPRLHAGGGGNSVNREELRKSLVAEGLDDILAARAVEAADKAVSIWEMQVIDFCRPPEVATMTRVLGRVADLSITCGGGFPQAERQRVFFSRALDYAVDEEDARKERGGYLAAISVEGNFIFDRATHRDFLGALLGTGIAREKVGDILLQGERGAHVVVAPDVAEYVVLSLAAVRSVPVKNKPIALADLGVRPPVTKEVRVGV---RERGRG 253
The following BLAST results are available for this feature:
BLAST of NO13G00770.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200140016001800Expect = 1.20e-80 / Id = 66.53SequenceEWM21747.1
Match NameE-valueIdentityDescription
EWM21747.11.200e-8066.53photosystem ii s4 domain protein [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00770NO13G00770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00770.3NO13G00770.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00770.3.cds1NO13G00770.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00770.3.cds2NO13G00770.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00770.3 ID=NO13G00770.3|Name=NO13G00770.3|organism=Nannochloropsis oceanica|type=mRNA|length=1848bp
ACAGGCACCTCTAGGATGTCCAACCCAGCAGCAAGAAGAAGAGCAGCAGC
AGTAGTAGCTGCCCGCGCCAGCCCCCATCTGTCCCCTCGCCTCCTCCTCC
TTTTCCTGATTGTGACCATTACAGCGACGCACGCTTTTCTCCCTTCCTAC
CTCCCGTCCTTCTCCTCCTCCCACTCCCGCAGCCCCACCTGTCTCAATGC
CGGAGGGGGCAACAGTCTCAACCGCGAGGAACTACGGAAATCCCTCGTCG
CCGAAGGGGTCGAAGACATTCTTGCTGCCCGTGCCGTCGAGGCAGCTGAT
AAAGCCCTGACGAACTGGGAGATGCAAGTCCTCGAGTTTTGTCGTCCCCC
TGAAGTAGCAACCATCAAAAGGGTTTTGGAGCGTGTGGCTGACTTAGCCA
TCACGCCCGACGGCGGATTCCCTCAAGCAGAGCGCCAACGTGTGTTTTTC
GCCCGGACAGTTGACTACGAGCTCGACCAGGAGCAAGAACGCCGGGAGAG
AGAAGCATACTTCACCTCGGTGTCGGTGGAGGGCAATTTCATTTTTGACA
AGGCGAGCCATAGGGATTTCTTGGGGGCTTTGTTGGGGACGGGGATAACA
AGGGAGAAGGTGGGTGACATTTTACTGCAAGGCGAACGAGGCGCTCACGT
AATCATGGCTCCGGAGGTAGCCGAATACGTCATGACCGCGTTGGCATCCG
TGCGGAGTGTGCCTGTGAAAAACAAGGCCATCCCTCTGAAAGAGTTGGGG
GTAAGGCCCCCGGTGACCAAGGAGGTAAGAAGTGGAATAGGGAAGGGTCG
TGAGAGGGCGGACGGGAACTAGCGACCGATGGCTAGAAGAGGAGGAGACG
TCGTGAAGAATACTCGGCTTTCTCGTCCTGAAGGCGTGCGTATTTGTACA
TGCTCGCTTGTCGTCTTCACTTGTTCGGACACACCTTCCTTCCTCGCTCT
TTCTTCCACACACAGATGCAATCGGTGGAGGCTTCCATGCGTCTGGATGC
AGTGGCCAGCGCCGGGATGGGCATGAGCCGGAGCAAGCTCAAGGTAGGTA
GGTAGGCCACATCTCCACGGGCCCCGGGGACACTCACACCTTTCCCTTCC
CCTTTCCCCCTTCACCCTTTCTTTTTTGTGCACGAAAATGATTTTGGCAT
TGCTTAGGGTGTCTTGTTCTGGTGCATGTATTCCTTTTCTACTGCCCTAT
CTGGCAGCCAAAAATGTGCTTCCGTCGAGCTAAAATTTTATCTCCAACTC
AACATTTCTTTTCCTCCTTCCATTCCTCCCTCCCGCCCTCCTCCCTTTTC
TCGTAGGATATGATTGAGAGCGGCGACGTTCTAGTAAATTGGAAGGAGAC
GAAATCCGCCAACTCGTTGTTGAAAGGCGGTGACATCGTCACCATCCGTG
GAAAAGGCCGTCTGGAGGTCAACGAGGTTGAGACGACGAGCAAAGGCAAA
TTCCGCGTCAAGATGACCAAGTTTATCTAGGCGTCATCTAAGACCCGATG
GGATCAGGTCGAGGGATGGAATGACGGGAGTGTGGGATCGAGGAGGGAGG
GGAGGGTAAGAGGGAGGCTTACCCATCAAGCAGCAGCAGCAGCAGCAGCA
GCAGTAGCAGTTGCGATCATGACCATCACAGAGACCCTTCATCCTTAGGC
ATGCGGGAGCCGGTGAGCATCAGGAGGAAATGATGGAACAGTTGTATATC
CATGTGTTAGAAAAAGAATCTGCAGACAAGAATAAGGAGTAAGCGGAGCA
CAAACACTAGCGACATTAGAGAGAGAAAGAGGGAGACATAAAACAAAGAA
TTGAATGAAGATTGATTTAAAGAAGGAAAATCTAACGACACTGTGGAA
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protein sequence of NO13G00770.3

>NO13G00770.3-protein ID=NO13G00770.3-protein|Name=NO13G00770.3|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MSNPAARRRAAAVVAARASPHLSPRLLLLFLIVTITATHAFLPSYLPSFS
SSHSRSPTCLNAGGGNSLNREELRKSLVAEGVEDILAARAVEAADKALTN
WEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVD
YELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVG
DILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPV
TKEVRSGIGKGRERADGN*
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mRNA from alignment at chr13:254485..256498+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00770.3 ID=NO13G00770.3|Name=NO13G00770.3|organism=Nannochloropsis oceanica|type=mRNA|length=2014bp|location=Sequence derived from alignment at chr13:254485..256498+ (Nannochloropsis oceanica)
ACAGGCACCTCTAGGATGTCCAACCCAGCAGCAAGAAGAAGAGCAGCAGC
AGTAGTAGCTGCCCGCGCCAGCCCCCATCTGTCCCCTCGCCTCCTCCTCC
TTTTCCTGATTGTGACCATTACAGCGACGCACGCTTTTCTCCCTTCCTAC
CTCCCGTCCTTCTCCTCCTCCCACTCCCGCAGCCCCACCTGTCTCAATGC
CGGAGGGGGCAACAGTCTCAACCGCGAGGAACTACGGAAATCCCTCGTCG
CCGAAGGGGTCGAAGACATTCTTGCTGCCCGTGCCGTCGAGGCAGCTGAT
AAAGCCCTGACGAACTGGGAGATGCAAGTCCTCGAGTTTTGTCGTCCCCC
TGAAGTAGCAACCATCAAAAGGGTTTTGGAGCGTGTGGCTGACTTAGCCA
TCACGCCCGACGGCGGATTCCCTCAAGCAGAGCGCCAACGTGTGTTTTTC
GCCCGGACAGTTGACTACGAGCTCGACCAGGAGCAAGAACGCCGGGAGAG
AGAAGCATACTTCACCTCGGTGTCGGTGGAGGGCAATTTCATTTTTGACA
AGGCGAGCCATAGGGATTTCTTGGGGGCTTTGTTGGGGACGGGGATAACA
AGGGAGAAGGTAAAAGGAACAAGAAAGAAAACAGACAGGCAGGCAGAAAG
GCAGGGAGAGGGGAAGAGGGGGAGGGCAGGAAGAAGGAAAAGATGGGACT
TGTGTCGTCAACTTCGAAGCGGGCCTTTTCTCCCCCTTTACCACGACCTC
TCATGTCATCTCTTTGCATTCTTAGGTGGGTGACATTTTACTGCAAGGCG
AACGAGGCGCTCACGTAATCATGGCTCCGGAGGTAGCCGAATACGTCATG
ACCGCGTTGGCATCCGTGCGGAGTGTGCCTGTGAAAAACAAGGCCATCCC
TCTGAAAGAGTTGGGGGTAAGGCCCCCGGTGACCAAGGAGGTAAGAAGTG
GAATAGGGAAGGGTCGTGAGAGGGCGGACGGGAACTAGCGACCGATGGCT
AGAAGAGGAGGAGACGTCGTGAAGAATACTCGGCTTTCTCGTCCTGAAGG
CGTGCGTATTTGTACATGCTCGCTTGTCGTCTTCACTTGTTCGGACACAC
CTTCCTTCCTCGCTCTTTCTTCCACACACAGATGCAATCGGTGGAGGCTT
CCATGCGTCTGGATGCAGTGGCCAGCGCCGGGATGGGCATGAGCCGGAGC
AAGCTCAAGGTAGGTAGGTAGGCCACATCTCCACGGGCCCCGGGGACACT
CACACCTTTCCCTTCCCCTTTCCCCCTTCACCCTTTCTTTTTTGTGCACG
AAAATGATTTTGGCATTGCTTAGGGTGTCTTGTTCTGGTGCATGTATTCC
TTTTCTACTGCCCTATCTGGCAGCCAAAAATGTGCTTCCGTCGAGCTAAA
ATTTTATCTCCAACTCAACATTTCTTTTCCTCCTTCCATTCCTCCCTCCC
GCCCTCCTCCCTTTTCTCGTAGGATATGATTGAGAGCGGCGACGTTCTAG
TAAATTGGAAGGAGACGAAATCCGCCAACTCGTTGTTGAAAGGCGGTGAC
ATCGTCACCATCCGTGGAAAAGGCCGTCTGGAGGTCAACGAGGTTGAGAC
GACGAGCAAAGGCAAATTCCGCGTCAAGATGACCAAGTTTATCTAGGCGT
CATCTAAGACCCGATGGGATCAGGTCGAGGGATGGAATGACGGGAGTGTG
GGATCGAGGAGGGAGGGGAGGGTAAGAGGGAGGCTTACCCATCAAGCAGC
AGCAGCAGCAGCAGCAGCAGTAGCAGTTGCGATCATGACCATCACAGAGA
CCCTTCATCCTTAGGCATGCGGGAGCCGGTGAGCATCAGGAGGAAATGAT
GGAACAGTTGTATATCCATGTGTTAGAAAAAGAATCTGCAGACAAGAATA
AGGAGTAAGCGGAGCACAAACACTAGCGACATTAGAGAGAGAAAGAGGGA
GACATAAAACAAAGAATTGAATGAAGATTGATTTAAAGAAGGAAAATCTA
ACGACACTGTGGAA
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Coding sequence (CDS) from alignment at chr13:254485..256498+

>NO13G00770.3 ID=NO13G00770.3|Name=NO13G00770.3|organism=Nannochloropsis oceanica|type=CDS|length=807bp|location=Sequence derived from alignment at chr13:254485..256498+ (Nannochloropsis oceanica)
ATGTCCAACCCAGCAGCAAGAAGAAGAGCAGCAGCAGTAGTAGCTGCCCG
CGCCAGCCCCCATCTGTCCCCTCGCCTCCTCCTCCTTTTCCTGATTGTGA
CCATTACAGCGACGCACGCTTTTCTCCCTTCCTACCTCCCGTCCTTCTCC
TCCTCCCACTCCCGCAGCCCCACCTGTCTCAATGCCGGAGGGGGCAACAG
TCTCAACCGCGAGGAACTACGGAAATCCCTCGTCGCCGAAGGGGTCGAAG
ACATTCTTGCTGCCCGTGCCGTCGAGGCAGCTGATAAAGCCCTGACGAAC
TGGGAGATGCAAGTCCTCGAGTTTTGTCGTCCCCCTGAAGTAGCAACCAT
CAAAAGGGTTTTGGAGCGTGTGGCTGACTTAGCCATCACGCCCGACGGCG
GATTCCCTCAAGCAGAGCGCCAACGTGTGTTTTTCGCCCGGACAGTTGAC
TACGAGCTCGACCAGGAGCAAGAACGCCGGGAGAGAGAAGCATACTTCAC
CTCGGTGTCGGTGGAGGGCAATTTCATTTTTGACAAGGCGAGCCATAGGG
ATTTCTTGGGGGCTTTGTTGGGGACGGGGATAACAAGGGAGAAGGTGGGT
GACATTTTACTGCAAGGCGAACGAGGCGCTCACGTAATCATGGCTCCGGA
GGTAGCCGAATACGTCATGACCGCGTTGGCATCCGTGCGGAGTGTGCCTG
TGAAAAACAAGGCCATCCCTCTGAAAGAGTTGGGGGTAAGGCCCCCGGTG
ACCAAGGAGGTAAGAAGTGGAATAGGGAAGGGTCGTGAGAGGGCGGACGG
GAACTAG
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Synonyms
Publications