NO13G00340, NO13G00340 (gene) Nannochloropsis oceanica

Overview
NameNO13G00340
Unique NameNO13G00340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1179
Alignment locationchr13:114574..115752 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat and SOCS box protein 18
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:114574..115752 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
The following BLAST results are available for this feature:
BLAST of NO13G00340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL133nonsL133Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR057ngnoR057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001877NSK001877Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00340.1NO13G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|118514gene_6981Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00340.1NO13G00340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00340 ID=NO13G00340|Name=NO13G00340|organism=Nannochloropsis oceanica|type=gene|length=1179bp
ATGGGTAGAGGATTAGAAGGAGTTGTTGCCGTTGTAGTCGCAGCCGTGGT
AGTGGTGGTGgtacttgtagtatgactggtagtgttaccagcagtgtaaa
cgcagtaatcaactagagccgtccgctcggtgcgaagagccccctgcatt
gcttcgcctcgtgacttatgattctttcccctctctccctcccgcccttg
ttttccctcccttcctttctcccctcccagGGCATGAGGACACACCAACC
AGAAAGAGGAGGAGGAGGAGGAGGATACTCCGACCGTGAGAGTAGCAGCA
GCAACAACAGCAGCCACCAGACGCACCTTCTTGAACATTCTTCTTTTGGC
GCCCTTGCCCTCACCCACGCCATTTCTCTTGGCGACAGCGACGCCCTCAT
GAAAGTCATCGATTCAGgtacctcttctccctttcctcccttcctctttc
cgtctctccttcttctcctccaatatcgcgctgcagactattccatacct
acctacctacctatctccctccctccctcccttctccttcccctccctcc
cttctagGCATCCCCATCTCTGTCCTAGGGTCCGGTGCTGCCTTACATCT
GCTAGCCCGCAACGCTGCCTCCCTCGAAGCCCCTTCCCTGCTCCTCCTCC
TCACCCTCCTCCTCCAGCACGGCGCTGGAGCTGATGGAGGAATTGACGCC
TTGGACGAGgtagaaacagacagtccctctcgtctcccctcctttcttcc
ctccattctttctttaagaaagagccttcttgctttccggtcgcggtatg
acgtaaatttctgctccatcctcccttctcctcccttctacccccctgtc
tccctttttcacagGAAGGTTTGTCCCCCCTCCACCGTTGTGTGGCCCTT
TCCCTCCCTCCCGCTGTCAGTCTCCTTCTCGACTACAAGGCCGACATCAA
TCTTCTCTCCCCTCCTCCTTCCACCTCCTCCCCTCTCCATATCGCCGCCC
AACGAAAGGATGAAGAAATGTGTCTGTTGTTGCTGGGAAGGGGAGCCAGA
GGGGAAGAGAGGGATGGGAAGGGCAAGACCCCAGGAGACTATTTCCCAGA
ATTGGCGGTGTTGACTGAGGGGAATGAGAAGAGGAAGGGAGGAGAAAGGG
AAGGAGGGGGAGGAGAAGCTAGTAAATAA
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protein sequence of NO13G00340.1

>NO13G00340.1-protein ID=NO13G00340.1-protein|Name=NO13G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MGRGLEGVVAVVVAAVVVVVGMRTHQPERGGGGGGYSDRESSSSNNSSHQ
THLLEHSSFGALALTHAISLGDSDALMKVIDSGIPISVLGSGAALHLLAR
NAASLEAPSLLLLLTLLLQHGAGADGGIDALDEEGLSPLHRCVALSLPPA
VSLLLDYKADINLLSPPPSTSSPLHIAAQRKDEEMCLLLLGRGARGEERD
GKGKTPGDYFPELAVLTEGNEKRKGGEREGGGGEASK*
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Synonyms
Publications