NO13G00340.1, NO13G00340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00340.1
Unique NameNO13G00340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length714
Alignment locationchr13:114574..115752 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:114574..115752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO13G00340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00340NO13G00340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00340.1NO13G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00340.1.cds1NO13G00340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00340.1.cds2NO13G00340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00340.1.cds3NO13G00340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00340.1.cds4NO13G00340.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00340.1 ID=NO13G00340.1|Name=NO13G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=714bp
ATGGGTAGAGGATTAGAAGGAGTTGTTGCCGTTGTAGTCGCAGCCGTGGT
AGTGGTGGTGGGCATGAGGACACACCAACCAGAAAGAGGAGGAGGAGGAG
GAGGATACTCCGACCGTGAGAGTAGCAGCAGCAACAACAGCAGCCACCAG
ACGCACCTTCTTGAACATTCTTCTTTTGGCGCCCTTGCCCTCACCCACGC
CATTTCTCTTGGCGACAGCGACGCCCTCATGAAAGTCATCGATTCAGGCA
TCCCCATCTCTGTCCTAGGGTCCGGTGCTGCCTTACATCTGCTAGCCCGC
AACGCTGCCTCCCTCGAAGCCCCTTCCCTGCTCCTCCTCCTCACCCTCCT
CCTCCAGCACGGCGCTGGAGCTGATGGAGGAATTGACGCCTTGGACGAGG
AAGGTTTGTCCCCCCTCCACCGTTGTGTGGCCCTTTCCCTCCCTCCCGCT
GTCAGTCTCCTTCTCGACTACAAGGCCGACATCAATCTTCTCTCCCCTCC
TCCTTCCACCTCCTCCCCTCTCCATATCGCCGCCCAACGAAAGGATGAAG
AAATGTGTCTGTTGTTGCTGGGAAGGGGAGCCAGAGGGGAAGAGAGGGAT
GGGAAGGGCAAGACCCCAGGAGACTATTTCCCAGAATTGGCGGTGTTGAC
TGAGGGGAATGAGAAGAGGAAGGGAGGAGAAAGGGAAGGAGGGGGAGGAG
AAGCTAGTAAATAA
back to top

protein sequence of NO13G00340.1

>NO13G00340.1-protein ID=NO13G00340.1-protein|Name=NO13G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MGRGLEGVVAVVVAAVVVVVGMRTHQPERGGGGGGYSDRESSSSNNSSHQ
THLLEHSSFGALALTHAISLGDSDALMKVIDSGIPISVLGSGAALHLLAR
NAASLEAPSLLLLLTLLLQHGAGADGGIDALDEEGLSPLHRCVALSLPPA
VSLLLDYKADINLLSPPPSTSSPLHIAAQRKDEEMCLLLLGRGARGEERD
GKGKTPGDYFPELAVLTEGNEKRKGGEREGGGGEASK*
back to top

mRNA from alignment at chr13:114574..115752+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00340.1 ID=NO13G00340.1|Name=NO13G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1179bp|location=Sequence derived from alignment at chr13:114574..115752+ (Nannochloropsis oceanica)
ATGGGTAGAGGATTAGAAGGAGTTGTTGCCGTTGTAGTCGCAGCCGTGGT
AGTGGTGGTGGTACTTGTAGTATGACTGGTAGTGTTACCAGCAGTGTAAA
CGCAGTAATCAACTAGAGCCGTCCGCTCGGTGCGAAGAGCCCCCTGCATT
GCTTCGCCTCGTGACTTATGATTCTTTCCCCTCTCTCCCTCCCGCCCTTG
TTTTCCCTCCCTTCCTTTCTCCCCTCCCAGGGCATGAGGACACACCAACC
AGAAAGAGGAGGAGGAGGAGGAGGATACTCCGACCGTGAGAGTAGCAGCA
GCAACAACAGCAGCCACCAGACGCACCTTCTTGAACATTCTTCTTTTGGC
GCCCTTGCCCTCACCCACGCCATTTCTCTTGGCGACAGCGACGCCCTCAT
GAAAGTCATCGATTCAGGTACCTCTTCTCCCTTTCCTCCCTTCCTCTTTC
CGTCTCTCCTTCTTCTCCTCCAATATCGCGCTGCAGACTATTCCATACCT
ACCTACCTACCTATCTCCCTCCCTCCCTCCCTTCTCCTTCCCCTCCCTCC
CTTCTAGGCATCCCCATCTCTGTCCTAGGGTCCGGTGCTGCCTTACATCT
GCTAGCCCGCAACGCTGCCTCCCTCGAAGCCCCTTCCCTGCTCCTCCTCC
TCACCCTCCTCCTCCAGCACGGCGCTGGAGCTGATGGAGGAATTGACGCC
TTGGACGAGGTAGAAACAGACAGTCCCTCTCGTCTCCCCTCCTTTCTTCC
CTCCATTCTTTCTTTAAGAAAGAGCCTTCTTGCTTTCCGGTCGCGGTATG
ACGTAAATTTCTGCTCCATCCTCCCTTCTCCTCCCTTCTACCCCCCTGTC
TCCCTTTTTCACAGGAAGGTTTGTCCCCCCTCCACCGTTGTGTGGCCCTT
TCCCTCCCTCCCGCTGTCAGTCTCCTTCTCGACTACAAGGCCGACATCAA
TCTTCTCTCCCCTCCTCCTTCCACCTCCTCCCCTCTCCATATCGCCGCCC
AACGAAAGGATGAAGAAATGTGTCTGTTGTTGCTGGGAAGGGGAGCCAGA
GGGGAAGAGAGGGATGGGAAGGGCAAGACCCCAGGAGACTATTTCCCAGA
ATTGGCGGTGTTGACTGAGGGGAATGAGAAGAGGAAGGGAGGAGAAAGGG
AAGGAGGGGGAGGAGAAGCTAGTAAATAA
back to top

Coding sequence (CDS) from alignment at chr13:114574..115752+

>NO13G00340.1 ID=NO13G00340.1|Name=NO13G00340.1|organism=Nannochloropsis oceanica|type=CDS|length=714bp|location=Sequence derived from alignment at chr13:114574..115752+ (Nannochloropsis oceanica)
ATGGGTAGAGGATTAGAAGGAGTTGTTGCCGTTGTAGTCGCAGCCGTGGT
AGTGGTGGTGGGCATGAGGACACACCAACCAGAAAGAGGAGGAGGAGGAG
GAGGATACTCCGACCGTGAGAGTAGCAGCAGCAACAACAGCAGCCACCAG
ACGCACCTTCTTGAACATTCTTCTTTTGGCGCCCTTGCCCTCACCCACGC
CATTTCTCTTGGCGACAGCGACGCCCTCATGAAAGTCATCGATTCAGGCA
TCCCCATCTCTGTCCTAGGGTCCGGTGCTGCCTTACATCTGCTAGCCCGC
AACGCTGCCTCCCTCGAAGCCCCTTCCCTGCTCCTCCTCCTCACCCTCCT
CCTCCAGCACGGCGCTGGAGCTGATGGAGGAATTGACGCCTTGGACGAGG
AAGGTTTGTCCCCCCTCCACCGTTGTGTGGCCCTTTCCCTCCCTCCCGCT
GTCAGTCTCCTTCTCGACTACAAGGCCGACATCAATCTTCTCTCCCCTCC
TCCTTCCACCTCCTCCCCTCTCCATATCGCCGCCCAACGAAAGGATGAAG
AAATGTGTCTGTTGTTGCTGGGAAGGGGAGCCAGAGGGGAAGAGAGGGAT
GGGAAGGGCAAGACCCCAGGAGACTATTTCCCAGAATTGGCGGTGTTGAC
TGAGGGGAATGAGAAGAGGAAGGGAGGAGAAAGGGAAGGAGGGGGAGGAG
AAGCTAGTAAATAA
back to top
Synonyms
Publications