NO13G00190, NO13G00190 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G00190 vs. NCBI_GenBank
Match: EWM22847.1 (splicing arginine serine-rich 1 9 [Nannochloropsis gaditana]) HSP 1 Score: 250.0 bits (637), Expect = 1.100e-62 Identity = 190/273 (69.60%), Postives = 205/273 (75.09%), Query Frame = 0 Query: 1 MAARIYVGNLPMDIRERDVEEMFARYGRVTGVDLKTPARPPAYAFVTFDDWRDAEDAVRAKDNYQMQEGGRLRVEMAKGAGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPFXXXXXXXXXXXXXXXXXXTEYGLIVTGLPPSASWQDLKDHMRGAGGDVCFSDVDRKGGGLVEFTSEEDMLRSLERLDKSEFSNRFESSEVRVRLPRDSRFARGG 274 MAAR+YVGNLPMDIRERDVE++F RYG VT VDLKTPARPPAYAFVTFDD RDAEDAVRA+DNYQ+QEG RLRVEMA+G GGD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RP XXXXXXXXXXXXXXXXTEY LIVT LPPSASWQDLKDHMRG+GGDVC+SDVDRKGGGLVEFT E+DML +LERLD+SEF NRF++ E+RVRLP+DS F R G Sbjct: 1 MAARVYVGNLPMDIRERDVEDLFTRYGNVTNVDLKTPARPPAYAFVTFDDRRDAEDAVRARDNYQLQEGNRLRVEMARGGGGD-----------------------------------------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRP---YXXXXXXXXXXXXXXXXTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVRLPKDSPFGRRG 223
BLAST of NO13G00190 vs. NCBI_GenBank
Match: CBN76606.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 151.0 bits (380), Expect = 6.900e-33 Identity = 107/259 (41.31%), Postives = 137/259 (52.90%), Query Frame = 0 Query: 3 ARIYVGNLPMDIRERDVEEMFARYGRVTGVDLKTPARPPAYAFVTFDDWRDAEDAVRAKDNYQMQEGGRLRVEMAKGAGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPFXXXXXXXXXXXXXXXXXXTEYGLIVTGLPPSASWQDLKDHMRGAGGDVCFSDVDRKGGGLVEFTSEEDMLRSLERLDKSEFSNRFESSEVRV 262 ARIY+GNLPMD+ E+D++++F ++GR+ +DLKTPARPPA+ F+TF D RDAE+AVRA+D Y M +G RLRVE+++G XXXXXXXXXXXXXXX TEY +IVTGLPPSASWQDLKDHMR A G+ ++DVD KGGG+V F + +DM +L +LD S+F N FE S + V Sbjct: 2 ARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDM-DGSRLRVEISRG-----------------------------------------------------------------------RRDPFGMGGGGHGGRMGXXXXXXXXXXXXXXXXXFQQTEYRVIVTGLPPSASWQDLKDHMRKA-GEPTYTDVDHKGGGIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISV 187
BLAST of NO13G00190 vs. NCBI_GenBank
Match: XP_020572757.1 (serine/arginine-rich-splicing factor SR34-like [Phalaenopsis equestris] >XP_020572758.1 serine/arginine-rich-splicing factor SR34-like [Phalaenopsis equestris]) HSP 1 Score: 148.3 bits (373), Expect = 4.500e-32 Identity = 96/261 (36.78%), Postives = 118/261 (45.21%), Query Frame = 0 Query: 5 IYVGNLPMDIRERDVEEMFARYGRVTGVDLKTPARPPAYAFVTFDDWRDAEDAVRAKDNYQMQEGGRLRVEMAKGAGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPFXXXXXXXXXXXXXXXXXXTEYGLIVTGLPPSASWQDLKDHMRGAGGDVCFSDVDRKGG---GLVEFTSEEDMLRSLERLDKSEFSNRFESSEVRVR 263 IYVGNLP DIRER++E++F +YG + VDLK P RPP YAFV FDD RDAEDA+R +D Y +G RLRVE+A G G ++Y ++VTGLPPSASWQDLKDHMR A GDVCFS V R GG G+V++T+ EDM ++ +LD SEF N F S +RVR Sbjct: 9 IYVGNLPGDIREREIEDLFYKYGHIVDVDLKIPPRPPGYAFVEFDDARDAEDAIRGRDGYNF-DGHRLRVELAHGGRGHS-------------------------------------------------------------------------------------SSHDRNSSYSGSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRRA-GDVCFSQVFRDGGGTTGIVDYTNNEDMKYAIRKLDDSEFRNAFSRSYIRVR 182
BLAST of NO13G00190 vs. NCBI_GenBank
Match: CBN77390.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 147.5 bits (371), Expect = 7.700e-32 Identity = 144/265 (54.34%), Postives = 178/265 (67.17%), Query Frame = 0 Query: 3 ARIYVGNLPMDIRERDVEEMFARYGRVTGVDLKTPARPPAYAFVTFDDWRDAEDAVRAKDNYQMQEGGRLRVEMAKGAGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPFXXXXXXXXXXXXXXXXXXTEYGLIVTGLPPSASWQDLKDHMRGAGGDVCFSDVDRKGGGLVEFTSEEDMLRSLERLDKSEFSNRFESSEVRVRLPRDS 268 +R+Y+GNLPMD++E+D+E++F +YG++T + LK P RPPA+ FVTF+D RDA++AVRA+D Y +G RLRVEM++G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXX TEY +VTGLP SASWQDLKDHMR A GDV ++DVD KGGG+V F ++E M +L +LD SEFSNR++++ + V RDS Sbjct: 54 SRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDF-DGYRLRVEMSRG----------------------------------------------KREFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTEYRAVVTGLPQSASWQDLKDHMRKA-GDVNYADVDHKGGGVVHFNNKEGMDYALRKLDGSEFSNRYDTATISVLPHRDS 270
BLAST of NO13G00190 vs. NCBI_GenBank
Match: XP_006654309.1 (PREDICTED: serine/arginine-rich-splicing factor SR34-like isoform X4 [Oryza brachyantha]) HSP 1 Score: 146.7 bits (369), Expect = 1.300e-31 Identity = 95/261 (36.40%), Postives = 121/261 (46.36%), Query Frame = 0 Query: 5 IYVGNLPMDIRERDVEEMFARYGRVTGVDLKTPARPPAYAFVTFDDWRDAEDAVRAKDNYQMQEGGRLRVEMAKGAGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPFXXXXXXXXXXXXXXXXXXTEYGLIVTGLPPSASWQDLKDHMRGAGGDVCFSDVDRKGG---GLVEFTSEEDMLRSLERLDKSEFSNRFESSEVRVR 263 IYVGNLP DIRER+VE++F +YGR+ +DLK P RPP YAFV F+D RDA+DA+ +D Y +G RLRVE+A G G P T+Y ++VTGLP SASWQDLKDHMR A GDVCFSDV R+GG G+V++T+ EDM +++ +LD SEF N F + VRV+ Sbjct: 9 IYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIHGRDAYDF-DGHRLRVELAHGGRG-------------------------------------------------------------------------------------PSFDRSSNNSSAGRRGASRRTDYRVMVTGLPSSASWQDLKDHMRRA-GDVCFSDVYREGGATVGIVDYTNYEDMKQAIRKLDDSEFRNAFSRAYVRVK 182
BLAST of NO13G00190 vs. NCBI_GenBank
Match: XP_015693317.1 (PREDICTED: serine/arginine-rich splicing factor SR30-like isoform X1 [Oryza brachyantha]) HSP 1 Score: 146.7 bits (369), Expect = 1.300e-31 Identity = 95/261 (36.40%), Postives = 121/261 (46.36%), Query Frame = 0 Query: 5 IYVGNLPMDIRERDVEEMFARYGRVTGVDLKTPARPPAYAFVTFDDWRDAEDAVRAKDNYQMQEGGRLRVEMAKGAGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPFXXXXXXXXXXXXXXXXXXTEYGLIVTGLPPSASWQDLKDHMRGAGGDVCFSDVDRKGG---GLVEFTSEEDMLRSLERLDKSEFSNRFESSEVRVR 263 IYVGNLP DIRER+VE++F +YGR+ +DLK P RPP YAFV F+D RDA+DA+ +D Y +G RLRVE+A G G P T+Y ++VTGLP SASWQDLKDHMR A GDVCFSDV R+GG G+V++T+ EDM +++ +LD SEF N F + VRV+ Sbjct: 9 IYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIHGRDAYDF-DGHRLRVELAHGGRG-------------------------------------------------------------------------------------PSFDRSSNNSSAGRRGASRRTDYRVMVTGLPSSASWQDLKDHMRRA-GDVCFSDVYREGGATVGIVDYTNYEDMKQAIRKLDDSEFRNAFSRAYVRVK 182
BLAST of NO13G00190 vs. NCBI_GenBank
Match: XP_015693318.1 (PREDICTED: serine/arginine-rich-splicing factor SR34-like isoform X2 [Oryza brachyantha]) HSP 1 Score: 146.7 bits (369), Expect = 1.300e-31 Identity = 95/261 (36.40%), Postives = 121/261 (46.36%), Query Frame = 0 Query: 5 IYVGNLPMDIRERDVEEMFARYGRVTGVDLKTPARPPAYAFVTFDDWRDAEDAVRAKDNYQMQEGGRLRVEMAKGAGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPFXXXXXXXXXXXXXXXXXXTEYGLIVTGLPPSASWQDLKDHMRGAGGDVCFSDVDRKGG---GLVEFTSEEDMLRSLERLDKSEFSNRFESSEVRVR 263 IYVGNLP DIRER+VE++F +YGR+ +DLK P RPP YAFV F+D RDA+DA+ +D Y +G RLRVE+A G G P T+Y ++VTGLP SASWQDLKDHMR A GDVCFSDV R+GG G+V++T+ EDM +++ +LD SEF N F + VRV+ Sbjct: 9 IYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIHGRDAYDF-DGHRLRVELAHGGRG-------------------------------------------------------------------------------------PSFDRSSNNSSAGRRGASRRTDYRVMVTGLPSSASWQDLKDHMRRA-GDVCFSDVYREGGATVGIVDYTNYEDMKQAIRKLDDSEFRNAFSRAYVRVK 182
BLAST of NO13G00190 vs. NCBI_GenBank
Match: XP_015693319.1 (PREDICTED: serine/arginine-rich splicing factor SR30-like isoform X3 [Oryza brachyantha]) HSP 1 Score: 146.7 bits (369), Expect = 1.300e-31 Identity = 95/261 (36.40%), Postives = 121/261 (46.36%), Query Frame = 0 Query: 5 IYVGNLPMDIRERDVEEMFARYGRVTGVDLKTPARPPAYAFVTFDDWRDAEDAVRAKDNYQMQEGGRLRVEMAKGAGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPFXXXXXXXXXXXXXXXXXXTEYGLIVTGLPPSASWQDLKDHMRGAGGDVCFSDVDRKGG---GLVEFTSEEDMLRSLERLDKSEFSNRFESSEVRVR 263 IYVGNLP DIRER+VE++F +YGR+ +DLK P RPP YAFV F+D RDA+DA+ +D Y +G RLRVE+A G G P T+Y ++VTGLP SASWQDLKDHMR A GDVCFSDV R+GG G+V++T+ EDM +++ +LD SEF N F + VRV+ Sbjct: 9 IYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIHGRDAYDF-DGHRLRVELAHGGRG-------------------------------------------------------------------------------------PSFDRSSNNSSAGRRGASRRTDYRVMVTGLPSSASWQDLKDHMRRA-GDVCFSDVYREGGATVGIVDYTNYEDMKQAIRKLDDSEFRNAFSRAYVRVK 182
BLAST of NO13G00190 vs. NCBI_GenBank
Match: EWM22848.1 (splicing arginine serine-rich 1 9 [Nannochloropsis gaditana]) HSP 1 Score: 146.0 bits (367), Expect = 2.200e-31 Identity = 68/86 (79.07%), Postives = 77/86 (89.53%), Query Frame = 0 Query: 188 TEYGLIVTGLPPSASWQDLKDHMRGAGGDVCFSDVDRKGGGLVEFTSEEDMLRSLERLDKSEFSNRFESSEVRVRLPRDSRFARGG 274 TEY LIVT LPPSASWQDLKDHMRG+GGDVC+SDVDRKGGGLVEFT E+DML +LERLD+SEF NRF++ E+RVRLP+DS F R G Sbjct: 63 TEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVRLPKDSPFGRRG 148
BLAST of NO13G00190 vs. NCBI_GenBank
Match: EEC79074.1 (hypothetical protein OsI_19658 [Oryza sativa Indica Group]) HSP 1 Score: 145.6 bits (366), Expect = 2.900e-31 Identity = 94/261 (36.02%), Postives = 121/261 (46.36%), Query Frame = 0 Query: 5 IYVGNLPMDIRERDVEEMFARYGRVTGVDLKTPARPPAYAFVTFDDWRDAEDAVRAKDNYQMQEGGRLRVEMAKGAGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPFXXXXXXXXXXXXXXXXXXTEYGLIVTGLPPSASWQDLKDHMRGAGGDVCFSDVDRKGG---GLVEFTSEEDMLRSLERLDKSEFSNRFESSEVRVR 263 IYVGNLP DIRER+VE++F +YGR+ +DLK P RPP YAFV F+D RDA+DA+ ++ Y +G RLRVE+A G G P T+Y ++VTGLP SASWQDLKDHMR A GDVCFSDV R+GG G+V++T+ EDM +++ +LD SEF N F + +RVR Sbjct: 32 IYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIYGRNGYDF-DGHRLRVELAHGGRG-------------------------------------------------------------------------------------PSFDRSSSYSSAGRRGAAKRTDYRVMVTGLPSSASWQDLKDHMRRA-GDVCFSDVYREGGATIGIVDYTNYEDMKQAIRKLDDSEFRNAFSRAYIRVR 205 The following BLAST results are available for this feature:
BLAST of NO13G00190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G00190 ID=NO13G00190|Name=NO13G00190|organism=Nannochloropsis oceanica|type=gene|length=2663bpback to top protein sequence of NO13G00190.1 >NO13G00190.1-protein ID=NO13G00190.1-protein|Name=NO13G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=351bpback to top Synonyms
Publications
|