NO13G00190.1, NO13G00190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00190.1
Unique NameNO13G00190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2049
Alignment locationchr13:77235..79897 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:77235..79897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00190.1 vs.
Match: EWM22847.1 (splicing arginine serine-rich 1 9 [Nannochloropsis gaditana])

HSP 1 Score: 284.3 bits (726), Expect = 5.300e-73
Identity = 202/342 (59.06%), Postives = 223/342 (65.20%), Query Frame = 0 
Query:    1 MAARIYVGNLPMDIRERDVEEMFARYGRVTGVDLKTPARPPAYAFVTFDDWRDAEDAVRAKDNYQMQEGGRLRVEMAKGAGGDIGGLRGGGGGGGGGRFGREGGGWEGGRGGGFGNGFDGGRDGGRDGGRNGGFGREGGGYEGGRGGGYDGGRGGGFGGGGGGGMRPPFFGGGRGGGREGGRGGGKRTEYGLIVTGLPPSASWQDLKDHMRGAGGDVCFSDVDRKGGGLVEFTSEEDMLRSLERLDKSEFSNRFESSEVRVRLPRDSRFARGGGGGGGRGGGGEGRRSRSRSRSPPRSRPRS--RPRSRPGSRSGSPPPSSQPPPGREVLVEVGGEGGREGG 341
            MAAR+YVGNLPMDIRERDVE++F RYG VT VDLKTPARPPAYAFVTFDD RDAEDAVRA+DNYQ+QEG RLRVEMA+G GGD            GGR    GGGWEGGRGG                               G GGGYDGGRGGG+G   GG    P+   G GGGR  G GGGKRTEY LIVT LPPSASWQDLKDHMRG+GGDVC+SDVDRKGGGLVEFT E+DML +LERLD+SEF NRF++ E+RVRLP+DS F R G GG G  G G              + P +   P   PG     P P   PPP  ++  E G EGGREGG
Sbjct:    1 MAARVYVGNLPMDIRERDVEDLFTRYGNVTNVDLKTPARPPAYAFVTFDDRRDAEDAVRARDNYQLQEGNRLRVEMARGGGGD------------GGR----GGGWEGGRGG------------------------------YGGGGGYDGGRGGGYGDRYGGDR--PYGDRGMGGGR--GGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVRLPKDSPFGRRGDGGEGGVGAGV-------------AAPEAVLVPALAPG-----PLP---PPPLDDLEAEGGREGGREGG 271
The following BLAST results are available for this feature:
BLAST of NO13G00190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22847.15.300e-7359.06splicing arginine serine-rich 1 9 [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00190NO13G00190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00190.1NO13G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00190.1.cds1NO13G00190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00190.1.cds2NO13G00190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00190.1.cds3NO13G00190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00190.1.cds4NO13G00190.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00190.1 ID=NO13G00190.1|Name=NO13G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2049bp
AAATTTCTGATGATCAAAATAGCGCCCGCAACACAGACAACACGCAACGA
CCATGATAAACAGGCAGGAGCACAACCAATTTGATGCCCCGAATGTTTGG
ATGCATGTTGCAGTGCCTCCTCTGTTAGGTTTGTTGCGTTTCTTTTTGTT
TGCATCTTCAGCGTTCCTACACTGCTCGCCTCGCGCTCGCATTCTTCATC
AGCTGCCTTGAGCTTACGCCAAGCCAGTCTGCATGCAGGCATTCGCCCAC
GAGCACACACACGACTTACGCGTGACTGCACAACCCCAGCGCAGTGTGTG
ATTCTCGGCGGCTCCATTAGCCGTACCGCCGCGCGACGCGTCTGCGGACA
CCACCCAGGCAAGCTCGCGTTCGCCTTGAGCTTGCTGTCAACCTTTCTCA
CCCCACTCTCCCTGCCTCTTGCATCCACCAACTGTATACAATTCACAGGG
GAAGGAGAACGAGAGCAGCATCAGGCCACAGCCATGGCAGCGCGGATTTA
TGTTGGCAATCTGCCCATGGACATCCGGGAACGGGACGTGGAGGAGATGT
TCGCCCGGTATGGCCGTGTGACAGGCGTTGACCTCAAGACGCCAGCACGC
CCCCCTGCCTATGCTTTTGTGACATTTGACGACTGGCGGGATGCCGAGGA
CGCGGTGCGGGCAAAAGACAATTATCAGATGCAAGAAGGAGGGAGGCTGA
GGGTTGAGATGGCGAAAGGGGCAGGGGGGGACATCGGGGGACTAAGGGGA
GGAGGAGGAGGAGGAGGAGGAGGGAGATTTGGACGAGAAGGAGGAGGGTG
GGAGGGGGGGAGGGGGGGAGGCTTTGGTAATGGATTTGACGGAGGGAGGG
ATGGAGGGAGGGATGGGGGGAGGAACGGGGGGTTTGGACGAGAAGGGGGA
GGATATGAGGGAGGGAGGGGCGGAGGTTATGATGGAGGAAGGGGTGGTGG
ATTTGGAGGGGGAGGAGGGGGAGGGATGCGTCCGCCGTTTTTCGGAGGAG
GAAGGGGGGGAGGGAGGGAGGGAGGAAGGGGGGGAGGGAAGAGAACGGAA
TACGGGTTGATTGTGACGGGATTGCCGCCGTCGGCGTCGTGGCAAGACTT
GAAGGATCACATGAGGGGCGCTGGGGGGGACGTGTGCTTCAGTGATGTGG
ATAGGAAAGGAGGGGGGCTGGTGGAGTTTACGAGTGAGGAGGACATGCTG
CGGAGTCTGGAACGGTTGGACAAGAGTGAGTTTTCGAACCGCTTCGAGTC
GAGCGAGGTACGTGTGCGGCTTCCCAGGGACTCGCGTTTCGCCCGTGGAG
GAGGAGGAGGAGGAGGAAGAGGAGGAGGGGGGGAAGGCAGGCGTAGCCGC
AGTCGTAGCCGCAGTCCTCCTCGCTCCCGCCCTCGCTCCCGCCCTCGCTC
CCGCCCTGGGTCTCGGTCAGGCTCTCCGCCTCCTTCCTCTCAGCCGCCAC
CTGGACGAGAGGTCTTGGTCGAGGTAGGGGGGGAGGGAGGGAGGGAGGGA
GGGATGGGTTGTGGAGGAGGAGAAGAGGAGGAGTAGCAGAGGCCAGAGAG
ATGCGAAATGGAGGGCCATCGCGAGGAGGAGGGAGAGGAGGTAGAGATGG
TGGTGATGGAAAATGAGGAGGAGGGGGAAATACAGGAGAAGAAGAAGAAC
AAGGAAGAAGAACAAGAGCAAGCACGAGGACAAGAAGAGGAAGAAGAAAA
TGGAGACGACGGGAGAGACGAGGAGGAAGAAAGAGAAGAGGACGAATCGG
AAAAAGAAGAAGGTGGTGATGATGATCATCTCAATCGATTATTGGGGTCT
TTATTATGGCTGACACGGCTCTTCTCGTGGCTGGCAGGTTAATACAGGTG
CATAATCCTGTCTGTGTGAGTGTGAGTGAGTGACTCTCTCGATCTCTCTC
TCTTTCTCTCCTATTCTCGCCATGTCCTCCTCGTCTATCAGACAGTCACT
ACACCCCAAACACTACACCGTCGCCCCCTCCCACCAACATTAACTACAGT
TCGTCACGCAGTTCATATTCTCCTATCTACAAGCCCCTACCACACACCA
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protein sequence of NO13G00190.1

>NO13G00190.1-protein ID=NO13G00190.1-protein|Name=NO13G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MAARIYVGNLPMDIRERDVEEMFARYGRVTGVDLKTPARPPAYAFVTFDD
WRDAEDAVRAKDNYQMQEGGRLRVEMAKGAGGDIGGLRGGGGGGGGGRFG
REGGGWEGGRGGGFGNGFDGGRDGGRDGGRNGGFGREGGGYEGGRGGGYD
GGRGGGFGGGGGGGMRPPFFGGGRGGGREGGRGGGKRTEYGLIVTGLPPS
ASWQDLKDHMRGAGGDVCFSDVDRKGGGLVEFTSEEDMLRSLERLDKSEF
SNRFESSEVRVRLPRDSRFARGGGGGGGRGGGGEGRRSRSRSRSPPRSRP
RSRPRSRPGSRSGSPPPSSQPPPGREVLVEVGGEGGREGGMGCGGGEEEE
*
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mRNA from alignment at chr13:77235..79897-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00190.1 ID=NO13G00190.1|Name=NO13G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2663bp|location=Sequence derived from alignment at chr13:77235..79897- (Nannochloropsis oceanica)
AAATTTCTGATGATCAAAATAGCGCCCGCAACACAGACAACACGCAACGA
CCATGATAAACAGGCAGGAGCACAACCAATTTGATGCCCCGAATGTTTGG
ATGCATGTTGCAGTGCCTCCTCTGTTAGGTTTGTTGCGTTTCTTTTTGTT
TGCATCTTCAGCGTTCCTACACTGCTCGCCTCGCGCTCGCATTCTTCATC
AGCTGCCTTGAGCTTACGCCAAGCCAGTCTGCATGCAGGCATTCGCCCAC
GAGCACACACACGACTTACGCGTGACTGCACAACCCCAGCGCAGTGTGTG
ATTCTCGGCGGCTCCATTAGCCGTACCGCCGCGCGACGCGTCTGCGGACA
CCACCCAGGCAAGCTCGCGTTCGCCTTGAGCTTGCTGTCAACCTTTCTCA
CCCCACTCTCCCTGCCTCTTGCATCCACCAACTGTATACAATTCACAGGG
GAAGGAGAACGAGAGCAGCATCAGGCCACAGCCATGGCAGCGCGGATTTA
TGTTGGCAATCTGCCCATGGACATCCGGGAACGGGACGTGGAGGAGATGT
TCGCCCGGTATGGCCGTGTGACAGGCGTTGACCTCAAGACGCCAGCACGG
TAAGGAGCGAGGAAGGGAAGGAGGGAGGAAGGGAGGGCAGGGAGGAACGT
GATAATATATTGGGAGAGCAGGTGGAAAAGCGAGTGAGAAGGGAAACGGG
TTTGGAGGCATGCGCGTCAGGAAAAGTGAGTTCTGTCTCGTCTCGTTCCT
CGTCCCACTCTTTGAGCTTTCACTTATCGTCTCCTCCTCTCCTTACCCTC
CCCTCCCTAAATCCCCCCTCTTTTATAGCCCCCCTGCCTATGCTTTTGTG
ACATTTGACGACTGGCGGGATGCCGAGGACGCGGTGCGGGCAAAAGACAA
TTATCAGATGCAAGAAGGAGGGAGGCTGAGGGTTGAGATGGCGAAAGGGG
CAGGGGGGGACATCGGGGGACTAAGGGGAGGAGGAGGAGGAGGAGGAGGA
GGGAGATTTGGACGAGAAGGAGGAGGGTGGGAGGGGGGGAGGGGGGGAGG
CTTTGGTAATGGATTTGACGGAGGGAGGGATGGAGGGAGGGATGGGGGGA
GGAACGGGGGGTTTGGACGAGAAGGGGGAGGATATGAGGGAGGGAGGGGC
GGAGGTTATGATGGAGGAAGGGGTGGTGGATTTGGAGGGGGAGGAGGGGG
AGGGATGCGTCCGCCGTTTTTCGGAGGAGGAAGGGGGGGAGGGAGGGAGG
GAGGAAGGGGGGGAGGGAAGAGAACGGAATACGGGTTGATTGTGACGGGA
TTGCCGCCGTCGGCGTCGTGGCAAGACTTGAAGGATCACATGAGGGGCGC
TGGGGGGGACGTGTGCTTCAGTGATGTGGATAGGAAAGGAGGGGGGCTGG
TGGAGTTTACGAGTGAGGAGGACATGCTGCGGAGTCTGGAACGGTTGGAC
AAGAGGTGAGGGACAAGGCAGGAAAGGGGGGAGGGAGGGAGGGAGGGAGG
GAGGGGAGGAGGGACGTGTGGTGTAGACGAAGAGGGAGGAGGTTCACGAG
GGAGGGAGCTAAGGAAGAAGGAGGGAGGGAAGGAGCACGTGGGGTATTCT
TCGGTTCACTGATATTAATGCGTTCCCTCCTCCATCCCTCCCTTCCTTCC
TCCCTTTCTTGTGCCTTTCTCAGTGAGTTTTCGAACCGCTTCGAGTCGAG
CGAGGTACGTGTGCGGCTTCCCAGGGACTCGCGTTTCGCCCGTGGAGGAG
GAGGAGGAGGAGGAAGAGGAGGAGGGGGGGAAGGCAGGCGTAGCCGCAGT
CGTAGCCGCAGTCCTCCTCGCTCCCGCCCTCGCTCCCGCCCTCGCTCCCG
CCCTGGGTCTCGGTCAGGCTCTCCGCCTCCTTCCTCTCAGCCGCCACCTG
GACGAGGTGGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAG
CGGGGGAGGAGGGGGAGCAGGTCACAGTCTCCCGTGAGGAGGAGAAGGGG
GGATAGTCGCTCACCTGCTCTCTCTCCTCCTCGGCCTCGCTCGCCGTCTC
CCTCCCGCTCACGCTCCCGGCAGAGGTCTTGGTCGAGGTAGGGGGGGAGG
GAGGGAGGGAGGGAGGGATGGGTTGTGGAGGAGGAGAAGAGGAGGAGTAG
CAGAGGCCAGAGAGATGCGAAATGGAGGGCCATCGCGAGGAGGAGGGAGA
GGAGGTAGAGATGGTGGTGATGGAAAATGAGGAGGAGGGGGAAATACAGG
AGAAGAAGAAGAACAAGGAAGAAGAACAAGAGCAAGCACGAGGACAAGAA
GAGGAAGAAGAAAATGGAGACGACGGGAGAGACGAGGAGGAAGAAAGAGA
AGAGGACGAATCGGAAAAAGAAGAAGGTGGTGATGATGATCATCTCAATC
GATTATTGGGGTCTTTATTATGGCTGACACGGCTCTTCTCGTGGCTGGCA
GGTTAATACAGGTGCATAATCCTGTCTGTGTGAGTGTGAGTGAGTGACTC
TCTCGATCTCTCTCTCTTTCTCTCCTATTCTCGCCATGTCCTCCTCGTCT
ATCAGACAGTCACTACACCCCAAACACTACACCGTCGCCCCCTCCCACCA
ACATTAACTACAGTTCGTCACGCAGTTCATATTCTCCTATCTACAAGCCC
CTACCACACACCA
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Coding sequence (CDS) from alignment at chr13:77235..79897-

>NO13G00190.1 ID=NO13G00190.1|Name=NO13G00190.1|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at chr13:77235..79897- (Nannochloropsis oceanica)
ATGGCAGCGCGGATTTATGTTGGCAATCTGCCCATGGACATCCGGGAACG
GGACGTGGAGGAGATGTTCGCCCGGTATGGCCGTGTGACAGGCGTTGACC
TCAAGACGCCAGCACGCCCCCCTGCCTATGCTTTTGTGACATTTGACGAC
TGGCGGGATGCCGAGGACGCGGTGCGGGCAAAAGACAATTATCAGATGCA
AGAAGGAGGGAGGCTGAGGGTTGAGATGGCGAAAGGGGCAGGGGGGGACA
TCGGGGGACTAAGGGGAGGAGGAGGAGGAGGAGGAGGAGGGAGATTTGGA
CGAGAAGGAGGAGGGTGGGAGGGGGGGAGGGGGGGAGGCTTTGGTAATGG
ATTTGACGGAGGGAGGGATGGAGGGAGGGATGGGGGGAGGAACGGGGGGT
TTGGACGAGAAGGGGGAGGATATGAGGGAGGGAGGGGCGGAGGTTATGAT
GGAGGAAGGGGTGGTGGATTTGGAGGGGGAGGAGGGGGAGGGATGCGTCC
GCCGTTTTTCGGAGGAGGAAGGGGGGGAGGGAGGGAGGGAGGAAGGGGGG
GAGGGAAGAGAACGGAATACGGGTTGATTGTGACGGGATTGCCGCCGTCG
GCGTCGTGGCAAGACTTGAAGGATCACATGAGGGGCGCTGGGGGGGACGT
GTGCTTCAGTGATGTGGATAGGAAAGGAGGGGGGCTGGTGGAGTTTACGA
GTGAGGAGGACATGCTGCGGAGTCTGGAACGGTTGGACAAGAGTGAGTTT
TCGAACCGCTTCGAGTCGAGCGAGGTACGTGTGCGGCTTCCCAGGGACTC
GCGTTTCGCCCGTGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGGGGGG
AAGGCAGGCGTAGCCGCAGTCGTAGCCGCAGTCCTCCTCGCTCCCGCCCT
CGCTCCCGCCCTCGCTCCCGCCCTGGGTCTCGGTCAGGCTCTCCGCCTCC
TTCCTCTCAGCCGCCACCTGGACGAGAGGTCTTGGTCGAGGTAGGGGGGG
AGGGAGGGAGGGAGGGAGGGATGGGTTGTGGAGGAGGAGAAGAGGAGGAG
TAG
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Synonyms
Publications