NO12G03890, NO12G03890 (gene) Nannochloropsis oceanica

Overview
NameNO12G03890
Unique NameNO12G03890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length666
Alignment locationchr12:1097928..1098593 +

Link to JBrowse

Properties
Property NameValue
DescriptionVacuolar protein sorting-associated protein 13c
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1097928..1098593 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026847VPS13
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Homology
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BLAST of NO12G03890 vs. NCBI_GenBank
Match: EWM25628.1 (vacuolar protein sorting-associated protein 13c [Nannochloropsis gaditana])

HSP 1 Score: 210.7 bits (535), Expect = 4.700e-51
Identity = 115/186 (61.83%), Postives = 135/186 (72.58%), Query Frame = 0 
Query:   14 VKPVVGLADAATDVLQGVQXXXXXXXXAEALCQLRPKRAVYGGERRLRVYSAADAQAQLLLGRARERERGKRSSREGEKMEEDEWYCDFAELGREGGGVVLLSTMRVLFIDEEGRLRHVLWWREVVLVEVVVPTGSHERTGVILHSQGGREGRPMRRFLVPCETVGHARIFKYKVEEALLSFRCLG 200
            VKPVVGLADAA+DVLQGVQ        AEAL QLRPKRAVYG ERRL+ Y  ADAQAQ+L  R R RE G+R   +      +EWYCD+AE+GR  GGVV+LST RVLF++EEG L + L WREVVL E+ VPT S ER G++LH Q G +G  +RRFLVPCETVGHA+  K KV++  LSFR  G
Sbjct: 4283 VKPVVGLADAASDVLQGVQGTAGAALTAEALSQLRPKRAVYGEERRLKPYDMADAQAQMLFERVRGRE-GRRKGGKRLLARHEEWYCDYAEIGRSRGGVVVLSTARVLFLNEEGILHYSLSWREVVLAELQVPTRSEERLGLVLHVQRGVDG-GLRRFLVPCETVGHAKALKGKVDQGSLSFRSSG 4466
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BLAST of NO12G03890 vs. NCBI_GenBank
Match: GAX25821.1 (hypothetical protein FisN_17Lh220 [Fistulifera solaris])

HSP 1 Score: 73.6 bits (179), Expect = 8.900e-10
Identity = 52/137 (37.96%), Postives = 75/137 (54.74%), Query Frame = 0 
Query:    3 KGVGKGVLGLVVKPVVGLADAATDVLQGVQXXXXXXXXAEA-LCQLRPKRAVYGGERRLRVYSAADAQAQLLLGRARERERGKRSSREGEKMEEDEWYCDFAELGREGGGVVLLSTMRVLFIDEEG------RLRHV 133
            KG+GKG+LGL+VKP++G++D   DV+ GV+         ++ L  LRP+RA+YG ER LR Y+ ADA A  LL R R           GE+      Y D  ++G     ++L+S  R+L I   G      RL+H+
Sbjct: 2551 KGIGKGLLGLLVKPIIGISDGIADVMLGVKGSVEGVTGVQSQLTPLRPRRALYGRERSLRSYNMADAAASSLLMRTR---------LAGEE------YFDHLDMGDR---LLLVSVKRLLVIGSRGQELLLIRLKHI 2669
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BLAST of NO12G03890 vs. NCBI_GenBank
Match: GAX13280.1 (hypothetical protein FisN_17Hh220 [Fistulifera solaris])

HSP 1 Score: 70.9 bits (172), Expect = 5.800e-9
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 0 
Query:    3 KGVGKGVLGLVVKPVVGLADAATDVLQGVQXXXXXXXXAEA-LCQLRPKRAVYGGERRLRVYSAADAQAQLLLGRAR 79
            KG+GKG+LGL+VKP++G++D   DV+ GV+         ++ L  LRP+RA+YG ER LR Y+ ADA A  LL R R
Sbjct: 4540 KGIGKGLLGLLVKPIIGISDGIADVMLGVKGSVEGATGVQSQLTPLRPRRALYGRERSLRAYNMADAAASSLLMRTR 4616
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BLAST of NO12G03890 vs. NCBI_GenBank
Match: XP_002182256.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46157.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 68.6 bits (166), Expect = 2.900e-8
Identity = 49/143 (34.27%), Postives = 73/143 (51.05%), Query Frame = 0 
Query:    3 KGVGKGVLGLVVKPVVGLADAATDVLQGVQXXXXXXXXAEAL---CQLRPKRAVYGGERRLRVYSAADAQAQLLLGRARERERGKRSSREGEKMEEDEWYCDFAELGREGGGVVLLSTMRVLFIDEEGRLRHVLWWREVVLVE 143
            KG+GKG+LGL+VKPV+GL+D  TDV+ GV+           +    Q+RP+RA  G +R ++ YS ADA AQ L+ R R                  E+Y    +LG     V LLS  ++L +   G    +L ++ +  +E
Sbjct: 4336 KGIGKGLLGLLVKPVIGLSDGITDVMIGVKGSMEGAGGPHNVPLQLQIRPRRAFVGSKRVMKSYSPADAAAQALMERTR---------------LAGEFYFGHVDLGDR---VALLSVRQLLLLGPSGEEMLLLKFKHIASLE 4460
The following BLAST results are available for this feature:
BLAST of NO12G03890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM25628.14.700e-5161.83vacuolar protein sorting-associated protein 13c [N... [more]
GAX25821.18.900e-1037.96hypothetical protein FisN_17Lh220 [Fistulifera sol... [more]
GAX13280.15.800e-949.35hypothetical protein FisN_17Hh220 [Fistulifera sol... [more]
XP_002182256.12.900e-834.27predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03890.1NO12G03890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03890.1NO12G03890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03890 ID=NO12G03890|Name=NO12G03890|organism=Nannochloropsis oceanica|type=gene|length=666bp
ATGATCAAAGGCGTAGGGAAAGGTGTCTTAGGATTGGTGGTCAAGCCCGT
TGTGGGCTTGGCGGATGCTGCCACGGACGTGCTGCAGGGCGTGCAGGGAA
CAGCGGGCGCAGCCACAGCAGCGGAAGCTTTGTGTCAGTTGAGGCCCAAG
AGGGCGGTGTATGGGGGAGAGAGGAGGTTAAGGGTATATTCAGCAGCGGA
TGCCCAGGCGCAGCTTCTGTTAGGGAGGGCAAGGGAGAGGGAGAGAGGGA
AGAGGAGCTCGAGGGAGGGTGAGAAAATGGAGGAGGATGAGTGGTATTGT
GATTTTGCTGAGCTGGGGAGGGAAGGAGGGGGAGTGGTGTTGCTCTCTAC
CATGAGAGTACTGTTTATAGATGAGGAAGGGAGGCTCAGGCATGTGCTGT
GGTGGAGGGAGGTTGTGCTGGTGGAGGTGGTCGTCCCGACGGGGAGCCAT
GAGAGGACAGGAGTCATATTGCACTCGCAAGGCGGTAGGGAGGGACGACC
GATGAGACGATTTTTAGTGCCGTGTGAGACGGTGGGGCATGCAAGAATTT
TCAAGTACAAGGTTGAGGAAGCCCTGTTGAGTTTTCGGTGCTTGGGGGGA
GGAGGAGGAGGAGGAGGAGAAGGTGGTGGTGGTGGAAGAGGAGAAAGAGG
AGGAGGGAGAAGCTGA
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protein sequence of NO12G03890.1

>NO12G03890.1-protein ID=NO12G03890.1-protein|Name=NO12G03890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MIKGVGKGVLGLVVKPVVGLADAATDVLQGVQGTAGAATAAEALCQLRPK
RAVYGGERRLRVYSAADAQAQLLLGRARERERGKRSSREGEKMEEDEWYC
DFAELGREGGGVVLLSTMRVLFIDEEGRLRHVLWWREVVLVEVVVPTGSH
ERTGVILHSQGGREGRPMRRFLVPCETVGHARIFKYKVEEALLSFRCLGG
GGGGGGEGGGGGRGERGGGRS*
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Synonyms
Publications