NO12G03890.1, NO12G03890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03890.1
Unique NameNO12G03890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length666
Alignment locationchr12:1097928..1098593 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1097928..1098593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03890.1 vs.
Match: EWM25628.1 (vacuolar protein sorting-associated protein 13c [Nannochloropsis gaditana])

HSP 1 Score: 245.0 bits (624), Expect = 2.200e-61
Identity = 136/206 (66.02%), Postives = 159/206 (77.18%), Query Frame = 0 
Query:    1 MIKGVGKGVLGLVVKPVVGLADAATDVLQGVQGTAGAATAAEALCQLRPKRAVYGGERRLRVYSAADAQAQLLLGRARERERGKRSSREGEKMEEDEWYCDFAELGREGGGVVLLSTMRVLFIDEEGRLRHVLWWREVVLVEVVVPTGSHERTGVILHSQGGREGRPMRRFLVPCETVGHARIFKYKVEEALLSFRCLGGGGGGGG 207
            M+KG+GKG+LGLVVKPVVGLADAA+DVLQGVQGTAGAA  AEAL QLRPKRAVYG ERRL+ Y  ADAQAQ+L  R R RE G+R   +      +EWYCD+AE+GR  GGVV+LST RVLF++EEG L + L WREVVL E+ VPT S ER G++LH Q G +G  +RRFLVPCETVGHA+  K KV++  LSFR  GG GG GG
Sbjct: 4270 MVKGMGKGMLGLVVKPVVGLADAASDVLQGVQGTAGAALTAEALSQLRPKRAVYGEERRLKPYDMADAQAQMLFERVRGRE-GRRKGGKRLLARHEEWYCDYAEIGRSRGGVVVLSTARVLFLNEEGILHYSLSWREVVLAELQVPTRSEERLGLVLHVQRGVDG-GLRRFLVPCETVGHAKALKGKVDQGSLSFRSSGGEGGLGG 4473
The following BLAST results are available for this feature:
BLAST of NO12G03890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25628.12.200e-6166.02vacuolar protein sorting-associated protein 13c [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03890NO12G03890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03890.1NO12G03890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03890.1.cds1NO12G03890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03890.1 ID=NO12G03890.1|Name=NO12G03890.1|organism=Nannochloropsis oceanica|type=mRNA|length=666bp
ATGATCAAAGGCGTAGGGAAAGGTGTCTTAGGATTGGTGGTCAAGCCCGT
TGTGGGCTTGGCGGATGCTGCCACGGACGTGCTGCAGGGCGTGCAGGGAA
CAGCGGGCGCAGCCACAGCAGCGGAAGCTTTGTGTCAGTTGAGGCCCAAG
AGGGCGGTGTATGGGGGAGAGAGGAGGTTAAGGGTATATTCAGCAGCGGA
TGCCCAGGCGCAGCTTCTGTTAGGGAGGGCAAGGGAGAGGGAGAGAGGGA
AGAGGAGCTCGAGGGAGGGTGAGAAAATGGAGGAGGATGAGTGGTATTGT
GATTTTGCTGAGCTGGGGAGGGAAGGAGGGGGAGTGGTGTTGCTCTCTAC
CATGAGAGTACTGTTTATAGATGAGGAAGGGAGGCTCAGGCATGTGCTGT
GGTGGAGGGAGGTTGTGCTGGTGGAGGTGGTCGTCCCGACGGGGAGCCAT
GAGAGGACAGGAGTCATATTGCACTCGCAAGGCGGTAGGGAGGGACGACC
GATGAGACGATTTTTAGTGCCGTGTGAGACGGTGGGGCATGCAAGAATTT
TCAAGTACAAGGTTGAGGAAGCCCTGTTGAGTTTTCGGTGCTTGGGGGGA
GGAGGAGGAGGAGGAGGAGAAGGTGGTGGTGGTGGAAGAGGAGAAAGAGG
AGGAGGGAGAAGCTGA
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protein sequence of NO12G03890.1

>NO12G03890.1-protein ID=NO12G03890.1-protein|Name=NO12G03890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MIKGVGKGVLGLVVKPVVGLADAATDVLQGVQGTAGAATAAEALCQLRPK
RAVYGGERRLRVYSAADAQAQLLLGRARERERGKRSSREGEKMEEDEWYC
DFAELGREGGGVVLLSTMRVLFIDEEGRLRHVLWWREVVLVEVVVPTGSH
ERTGVILHSQGGREGRPMRRFLVPCETVGHARIFKYKVEEALLSFRCLGG
GGGGGGEGGGGGRGERGGGRS*
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mRNA from alignment at chr12:1097928..1098593+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03890.1 ID=NO12G03890.1|Name=NO12G03890.1|organism=Nannochloropsis oceanica|type=mRNA|length=666bp|location=Sequence derived from alignment at chr12:1097928..1098593+ (Nannochloropsis oceanica)
ATGATCAAAGGCGTAGGGAAAGGTGTCTTAGGATTGGTGGTCAAGCCCGT
TGTGGGCTTGGCGGATGCTGCCACGGACGTGCTGCAGGGCGTGCAGGGAA
CAGCGGGCGCAGCCACAGCAGCGGAAGCTTTGTGTCAGTTGAGGCCCAAG
AGGGCGGTGTATGGGGGAGAGAGGAGGTTAAGGGTATATTCAGCAGCGGA
TGCCCAGGCGCAGCTTCTGTTAGGGAGGGCAAGGGAGAGGGAGAGAGGGA
AGAGGAGCTCGAGGGAGGGTGAGAAAATGGAGGAGGATGAGTGGTATTGT
GATTTTGCTGAGCTGGGGAGGGAAGGAGGGGGAGTGGTGTTGCTCTCTAC
CATGAGAGTACTGTTTATAGATGAGGAAGGGAGGCTCAGGCATGTGCTGT
GGTGGAGGGAGGTTGTGCTGGTGGAGGTGGTCGTCCCGACGGGGAGCCAT
GAGAGGACAGGAGTCATATTGCACTCGCAAGGCGGTAGGGAGGGACGACC
GATGAGACGATTTTTAGTGCCGTGTGAGACGGTGGGGCATGCAAGAATTT
TCAAGTACAAGGTTGAGGAAGCCCTGTTGAGTTTTCGGTGCTTGGGGGGA
GGAGGAGGAGGAGGAGGAGAAGGTGGTGGTGGTGGAAGAGGAGAAAGAGG
AGGAGGGAGAAGCTGA
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Coding sequence (CDS) from alignment at chr12:1097928..1098593+

>NO12G03890.1 ID=NO12G03890.1|Name=NO12G03890.1|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at chr12:1097928..1098593+ (Nannochloropsis oceanica)
ATGATCAAAGGCGTAGGGAAAGGTGTCTTAGGATTGGTGGTCAAGCCCGT
TGTGGGCTTGGCGGATGCTGCCACGGACGTGCTGCAGGGCGTGCAGGGAA
CAGCGGGCGCAGCCACAGCAGCGGAAGCTTTGTGTCAGTTGAGGCCCAAG
AGGGCGGTGTATGGGGGAGAGAGGAGGTTAAGGGTATATTCAGCAGCGGA
TGCCCAGGCGCAGCTTCTGTTAGGGAGGGCAAGGGAGAGGGAGAGAGGGA
AGAGGAGCTCGAGGGAGGGTGAGAAAATGGAGGAGGATGAGTGGTATTGT
GATTTTGCTGAGCTGGGGAGGGAAGGAGGGGGAGTGGTGTTGCTCTCTAC
CATGAGAGTACTGTTTATAGATGAGGAAGGGAGGCTCAGGCATGTGCTGT
GGTGGAGGGAGGTTGTGCTGGTGGAGGTGGTCGTCCCGACGGGGAGCCAT
GAGAGGACAGGAGTCATATTGCACTCGCAAGGCGGTAGGGAGGGACGACC
GATGAGACGATTTTTAGTGCCGTGTGAGACGGTGGGGCATGCAAGAATTT
TCAAGTACAAGGTTGAGGAAGCCCTGTTGAGTTTTCGGTGCTTGGGGGGA
GGAGGAGGAGGAGGAGGAGAAGGTGGTGGTGGTGGAAGAGGAGAAAGAGG
AGGAGGGAGAAGCTGA
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Synonyms
Publications