NO12G03750, NO12G03750 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G03750
Unique Name	NO12G03750
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3884
Alignment location	chr12:1040165..1044048 -

Link to JBrowse

Properties


Property Name	Value
Description	SANT/Myb domain protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:1040165..1044048 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeodomain-like
IPR017930	Myb_dom
IPR001005	SANT/Myb

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Homology

[Close]

BLAST of NO12G03750 vs. NCBI_GenBank
Match: EWM25668.1 (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 134.0 bits (336), Expect = 2.000e-27
Identity = 73/129 (56.59%), Postives = 85/129 (65.89%), Query Frame = 0

Query:   23 YYYDAHFRPYPAQNLVS-----SRGVNYHAIDRREGDSNSSRDYPQSGRWTNEEHILFLQGLQLHGKDWKKISTMIETRSLVQIRSHAQKYFQKVTQAKQSGLSTLCGWSGEEDIQLLMDGKRMATSRG 147
            YYYDAHF  + A+ LVS     + G   H  ++R G    S+    +GRWTNEEH+LFLQGL  HGKDWK+I   + TRSL QIRSHAQKYFQKV QAK+SG        G+ D QLLMDGKRM  SRG
Sbjct:   40 YYYDAHFLLHSAETLVSVVARAADGTAGHIGNKRRGRRTCSKPKTHNGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGR------LGDGDFQLLMDGKRMVFSRG 162

[Close]

BLAST of NO12G03750 vs. NCBI_GenBank
Match: AGB13670.1 (MYB360 [Nannochloropsis sp. YJH-2012])

HSP 1 Score: 104.0 bits (258), Expect = 2.200e-18
Identity = 67/162 (41.36%), Postives = 86/162 (53.09%), Query Frame = 0

Query:   13 EADIELPTTKYYYDAHFRPYPAQNLVSSRGVNYHAIDRREGDSNSSRDYPQSGRWTNEEHILFLQGLQLHGKDWKKISTMIETRSLVQIRSHAQKYFQKVTQAKQSGLSTLCGWSGEEDIQLLMDGKRMATSRGVGCTLTAAGRGREGGKEGEIKANIKKKR 175
            EA  E P     YDAHF P       S     +     +EG  +     P  GRWT +EH+ FL+GL+++G+DW KI  ++ TRS  Q+RSHAQKYFQ++TQAK+SG        GE D Q +MDGKRM  S        A  RG  G KE +  A    +R
Sbjct:   30 EAGQEPPEKPRIYDAHFAPCTLDLTPS-----WAPAPNKEGGPS-----PLPGRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRITQAKESGR------IGESDFQFMMDGKRMFKS--------AQKRGSGGRKENKTGAQGTNQR 167

[Close]

BLAST of NO12G03750 vs. NCBI_GenBank
Match: EJK60893.1 (hypothetical protein THAOC_18691 [Thalassiosira oceanica])

HSP 1 Score: 93.2 bits (230), Expect = 3.800e-15
Identity = 42/63 (66.67%), Postives = 54/63 (85.71%), Query Frame = 0

Query:   57 SSRDYPQSGRWTNEEHILFLQGLQLHGKDWKKISTMIETRSLVQIRSHAQKYFQKVTQAKQSG 120
            SSR    +GRWT EEH LFLQGL+ HGK WKKI+T+I++R++VQIR+HAQKYFQK+ +A+QSG
Sbjct:  303 SSRQSENTGRWTAEEHRLFLQGLERHGKGWKKIATLIKSRTVVQIRTHAQKYFQKLAKARQSG 365

[Close]

BLAST of NO12G03750 vs. NCBI_GenBank
Match: CBN78551.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 90.5 bits (223), Expect = 2.500e-14
Identity = 39/60 (65.00%), Postives = 55/60 (91.67%), Query Frame = 0

Query:   64 SGRWTNEEHILFLQGLQLHGKDWKKISTMIETRSLVQIRSHAQKYFQKVTQAKQSGLSTL 124
            +GRWT++EH LFL+GL+LHGK WK+I+T+I+TR++VQIR+HAQKYFQK+++A+ SG S L
Sbjct:   31 TGRWTSDEHRLFLRGLELHGKGWKQIATLIQTRTVVQIRTHAQKYFQKLSKAQASGTSHL 90

[Close]

BLAST of NO12G03750 vs. NCBI_GenBank
Match: CBJ27465.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 89.7 bits (221), Expect = 4.200e-14
Identity = 38/56 (67.86%), Postives = 52/56 (92.86%), Query Frame = 0

Query:   64 SGRWTNEEHILFLQGLQLHGKDWKKISTMIETRSLVQIRSHAQKYFQKVTQAKQSG 120
            +GRWT +EH LFL+GL+LHGK WKKI+++I+TR++VQIR+HAQKYFQK+ +AKQ+G
Sbjct:    6 TGRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKIAKAKQNG 61

[Close]

BLAST of NO12G03750 vs. NCBI_GenBank
Match: XP_002292776.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED89972.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 89.7 bits (221), Expect = 4.200e-14
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 0

Query:   33 PAQNLVSSRGVNYHAIDRREGDSNSSRDYPQSGRWTNEEHILFLQGLQLHGKDWKKISTMIETRSLVQIRSHAQKYFQKVTQAKQ---SGLSTLCGWSGEEDIQL 135
            P+ N VS+   N +A++              +GRWT EEH LFLQGL+ HGK WKKI+ +I++R++VQIR+HAQKYFQK+ +A+    SG+  + G +GE+  +L
Sbjct:  400 PSGNTVSTLNPNTNAVE-------------NTGRWTAEEHRLFLQGLEQHGKGWKKIAGLIKSRTVVQIRTHAQKYFQKLAKARAGDGSGIPMIGGGAGEDSPEL 491

[Close]

BLAST of NO12G03750 vs. NCBI_GenBank
Match: EWM30452.1 (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 89.0 bits (219), Expect = 7.200e-14
Identity = 37/56 (66.07%), Postives = 52/56 (92.86%), Query Frame = 0

Query:   64 SGRWTNEEHILFLQGLQLHGKDWKKISTMIETRSLVQIRSHAQKYFQKVTQAKQSG 120
            +GRWT EEH+LFL+GL++HGK WKKI+ +I+TR++VQIR+HAQKYFQK+ +AK++G
Sbjct:  100 TGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNG 155

[Close]

BLAST of NO12G03750 vs. NCBI_GenBank
Match: GAX28359.1 (protein MYSM1 [Fistulifera solaris])

HSP 1 Score: 88.6 bits (218), Expect = 9.400e-14
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 0

Query:   64 SGRWTNEEHILFLQGLQLHGKDWKKISTMIETRSLVQIRSHAQKYFQKVTQAKQSGLSTLCGWSGEEDIQLLMDGKRMATSRGVGCTLTAA 155
            +GRWT EEH LFLQGL+ HGK WKKI+++I++R++VQIR+HAQKYFQK+ +A+Q+G          E+  + M+G+    S     T TAA
Sbjct:   99 TGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNG----------EEGDITMEGRGGNASITSNTTATAA 179

[Close]

BLAST of NO12G03750 vs. NCBI_GenBank
Match: GAX24276.1 (protein MYSM1 [Fistulifera solaris])

HSP 1 Score: 88.6 bits (218), Expect = 9.400e-14
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 0

Query:   64 SGRWTNEEHILFLQGLQLHGKDWKKISTMIETRSLVQIRSHAQKYFQKVTQAKQSGLSTLCGWSGEEDIQLLMDGKRMATSRGVGCTLTAA 155
            +GRWT EEH LFLQGL+ HGK WKKI+++I++R++VQIR+HAQKYFQK+ +A+Q+G          E+  + M+G+    S     T TAA
Sbjct:   98 TGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNG----------EEGDITMEGRGGNASITSNTTATAA 178

[Close]

BLAST of NO12G03750 vs. NCBI_GenBank
Match: GBG31880.1 (Myb family DNA-binding protein, SHAQKYF family [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 88.2 bits (217), Expect = 1.200e-13
Identity = 40/56 (71.43%), Postives = 51/56 (91.07%), Query Frame = 0

Query:   64 SGRWTNEEHILFLQGLQLHGKDWKKISTMIETRSLVQIRSHAQKYFQKVTQAKQSG 120
            +GRWT+EEH +FL+GL+LHGK+WKKIS MI+TR++VQIR+HAQKYFQKV  AK +G
Sbjct:   29 AGRWTHEEHSIFLEGLKLHGKEWKKISDMIQTRTVVQIRTHAQKYFQKV--AKSTG 82

The following BLAST results are available for this feature:

BLAST of NO12G03750 vs. NCBI_GenBank

BLAST of NO12G03750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM25668.1	2.000e-27	56.59	SANT/Myb domain protein [Nannochloropsis gaditana]	[more]
AGB13670.1	2.200e-18	41.36	MYB360 [Nannochloropsis sp. YJH-2012]	[more]
EJK60893.1	3.800e-15	66.67	hypothetical protein THAOC_18691 [Thalassiosira oc...	[more]
CBN78551.1	2.500e-14	65.00	conserved unknown protein [Ectocarpus siliculosus]	[more]
CBJ27465.1	4.200e-14	67.86	conserved unknown protein [Ectocarpus siliculosus]	[more]
XP_002292776.1	4.200e-14	44.76	predicted protein [Thalassiosira pseudonana CCMP13...	[more]
EWM30452.1	7.200e-14	66.07	SANT/Myb domain protein [Nannochloropsis gaditana]	[more]
GAX28359.1	9.400e-14	49.45	protein MYSM1 [Fistulifera solaris]	[more]
GAX24276.1	9.400e-14	49.45	protein MYSM1 [Fistulifera solaris]	[more]
GBG31880.1	1.200e-13	71.43	Myb family DNA-binding protein, SHAQKYF family [Au...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL124	nonsL124	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR014	ncniR014	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR006	ngnoR006	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK010356	NSK010356	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO12G03750.1	NO12G03750.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|639959	gene_5554	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100355g5	gene4844	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO12G03750.1	NO12G03750.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO12G03750 ID=NO12G03750|Name=NO12G03750|organism=Nannochloropsis oceanica|type=gene|length=3884bp
AGGAAGCGTTGTTTCTCAGAGCGGGCTGGCAATTTTATTTGCCTTGCTGA
CTTTCCACCTCTCGGCACCTACATAATCGTGTCGTCTCGAACACGAAGGC
AACGCTATGTTTCTCGTCGATCCCGATACAGCAACCTTGCCTGAGGCCGA
CATTGAGCTCCCCACCACTAAATACTACTACGACGCCCATTTCCGCCCCT
ATCCGGCGCAAAACCTCGTCTCGTCTAGGGGAGTAAATTACCATGCCATC
GACCGACGGGAAGGCGACAGCAACAGCAGCAGGGACTATCCCCAGAGTGg
taagttagagggtgaatgagacctaaaactcaaatcagacaaatagaggc
tctgtggaggccaacaaaatggtgaatgggatgatgggttgtccctgaaa
tgttgtcagagggtcttaatgaggcggaaggtggactacgccgttgccac
aactacagaaaataccgataagttcgctggcagcattttgaatcaggcaa
gccccaagcactccatgtcccctccagcacacacatatattcacttatgc
atgtatatgacctattgtaagccgtccttccatggcccccgtggccccga
ggctgtcacgcacccgcaccctgcctggtcacggctgacttgctcgaagc
tgtctcgccactagctcaggcttactacacacccaacatccaactcacct
tctaggcagtcgcgaaattcgatccttgtcgatattactcttacatcccc
cccccccccccccaatcactctctcctttcctggtatccatcttcccacc
cctgtggtcccttaatacaaggcaccttttccacctcctcattcctcacg
gaacccacaattgtttgtgccgtttctctgtcgggcagcattctcgtctc
cccaaaaaccctcttcctctcccccccttcctttcgaatgctccaacctt
tcccgaccaaaaacacgacatacgcatattaatgtagtggagggaaaatg
acaaatacactcaagtctccgtccatcacttcctccctccctccctctct
cccttcccagGTCGATGGACCAATGAAGAACACATACTGTTCCTGCAAGG
CCTGCAGTTGCACGGGAAGGATTGGAAAAAAATCAGCACTATGATCGAGA
CACGGAGCTTGGTGCAGATCCGCAGCCACGCTCAGAAGTACTTCCAGAAG
GTGACACAGGCCAAGCAGAGCGGGCTGAGCACGTTATGTGGGTGGAGCGG
GGAGGAAGACATTCAACTGCTGATGGATGGGAAGCGAATGGCCACGAGTA
GAGGGGTCGGGTGTACTCTTACTGCGGCGGGTAGAGGAAGAGAAGGAGGA
AAAGAAGGTGAAATTAAGGCAAATATCAAGAAGAAGAGGAGCCAGAAAGG
CAGGAGCATTGAGCGGTGTACCAGCTGTAGCCGTAAAGGGAAGGTGATGA
CGGCTACCGGTCGTAAGGTCAGGCCGAAGTCGTCGCGTTCCTTCCCCTCC
AGCTCTTCCATCGATTCCGCAGCGAGCAGCCTCATGATCTCTTCTCATGC
CAGCAGCACCATCACCAACACTTCCTCCCCCTGCACCACTTCCTGCACCA
CCTCTCCCTACTTCGCTTTCTCTTCCTCCGTCTCCAACCCCTTTCTCTTT
TCGCGGGACGAAACAGCTACCGCCTTCTTTCACCGACAATTACAAGACCA
TCGCTACCAGCAGCAACAGCAGGAGTTTCAGCAACAGCAGCATCACCTGC
ACTACTACCACCACCAGAACCAGGAGCAGGAGGAGGAGGCGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGCAGCAGCAGCAGCAGCAGCAgtagcagcagccgcagccgccg
cagcacacttccaacctctctttggttccctccgccgccggctgtagCAT
CAGCGGAGTCAGCAGCAGCAGTAACAGCAGCAGCAGTATCAGCAGTAAAG
GCAGCGAGGCAGAAAGGGAACGCGAGGATCACGAAGGACTGGGTGTGGCC
ATCCAAATCGACTCTGCCGATTTGTCCTGGTTCGATCCCTTCTCCGACCC
CCAAGAACAGGAGCAACACCAGCAGGAGCAGCAGTACCCGCAGTTCCAGC
TGCAACACCATCAGGAGCAGCAGCAGCAGGAGCAGCAGCAGGAGCAGCAG
CAGCAGTACCCGCAGTTCCAGCTGCAACACCATCAGGAGCAGCAGCAGCA
GGAGCTGCAGCAGGAGCAGGAGCAGCAGTTGTACCTACAGCGACACCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAAACAGCACTACTGC
CAGCAGCTCAAGCTGCAACACTACCACCATAACCACCAGCAGCAGCGGCA
GCAGCAGCTGCTGCTGCCGCAACACCAACACCATCAGGAGCAGCAGCAGG
AGCAGCAGGAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAGCAGCAGCAA
CAACAACAACAACAACAACAACAACAACAACAACAACGACATCAACAACA
ACGACATCATCATCATAACCAACACATACAGGAACAAGAAGGGGCGCGCG
GGGAGGAGGGGCTGGTAATGGTCGTGGAGGAGGAGAAAAGGAAGTTTCTG
GAAAAGACAAAAGGCTTTCTCGCGGCCGATGGGCCTGTTGAGTTGAATAC
CAGCGTGATCCCCGACGACATCCGCGGGAGTCAGAACACTTTCGCGCCTG
CCCCTCACTCAATGTCCTTGGATAACAGTGTGGGAAGCCACAGCAAGCTC
TGCCTCCTCCCTTTGCCGCCTGACCAGGAGTGGCGACAGCAGCAGCAGCA
GCAGCAGCATTTTTCACAGAAGCTAGGGCGGGAAGAAGCTGGAGAGACGG
AGCATCCTCATACGCCACAATTTCCGTCGTTCGTGTTCCAACAGCCACAG
AACCACCGACAGCGCTACTGGCAGCAGCAGCCGCAGCAGCGGCCGCAACA
GCTACATCAGTGCATTTCTCTTTCCTCCTTCCCGTCCTCTTCGGCCTCCC
GCTGTGTATCCATGCCCGTTTCGACGTCTTTGCTCGGTCATCGCCGACAT
GAGGCCATTCCACAGGAGGGGATGCAGCTGCAGCTGCTACAGCAGGCGGA
AGGGGCTAAGGCAGGGTCTGTCTTCCAAGCTCAGCAGTGCATGCAGTTCT
TCCCTTCCCAACATCAACAAGAGGCTTAGGGAGGGAGGGAGGAAGGAAGA
AACGAGTGGGGCGACACTTGTTAGTCTATGAACTTACCATATTATCGGTC
GAGAAAGAGGCATCAGAGAATTGACACCACTAGCATCACTATTGCCATCG
ATATCACGATTAGCAGCAATTATGTCATCAATATCAACACCAGTTAGAAC
TCGAGTGCAGGTAAGAGAAGAAGGACAGTAGAGGGACTCATTAAGGGGGA
AGAGTTACTGTGGAGCATCGAGCATCAGGGCATGACCGTTGCGGGCAGCT
CACTGAGAAGCGAGTTCGGTGTGTCGTTGTAGTCTGCCGTGGCCGTTCCC
CTTCGGTCTACCTATTGCCCTTTTCCTTGTCCTTATAACAGTTCCGCGCC
TCAACGAATAAGCGGGAAAAGATCGTAGCAACAGCCCCATTAATTACGAG
AAGAGAGGTAAACTATTTGATTGATATGATGATGAATTGAAATGAAGATT
GCAAAGAGCACGAGGTGTGATTGGAATGGACAGCGGGATGCATATGGCTG
AGAAAAGTGTATTTTACCAGCATATCAATTAAAAATAGAAGCACAATCTA
GCACGCAAAAAGAATACACAATTGACAATGTGCA

protein sequence of NO12G03750.1

>NO12G03750.1-protein ID=NO12G03750.1-protein|Name=NO12G03750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=781bp
MFLVDPDTATLPEADIELPTTKYYYDAHFRPYPAQNLVSSRGVNYHAIDR
REGDSNSSRDYPQSGRWTNEEHILFLQGLQLHGKDWKKISTMIETRSLVQ
IRSHAQKYFQKVTQAKQSGLSTLCGWSGEEDIQLLMDGKRMATSRGVGCT
LTAAGRGREGGKEGEIKANIKKKRSQKGRSIERCTSCSRKGKVMTATGRK
VRPKSSRSFPSSSSIDSAASSLMISSHASSTITNTSSPCTTSCTTSPYFA
FSSSVSNPFLFSRDETATAFFHRQLQDHRYQQQQQEFQQQQHHLHYYHHQ
NQEQEEEAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEQQQ
QQQHISGVSSSSNSSSSISSKGSEAEREREDHEGLGVAIQIDSADLSWFD
PFSDPQEQEQHQQEQQYPQFQLQHHQEQQQQEQQQEQQQQYPQFQLQHHQ
EQQQQELQQEQEQQLYLQRHQQQQQQQQQQQQQKQHYCQQLKLQHYHHNH
QQQRQQQLLLPQHQHHQEQQQEQQEQQQQQEQQQQQQQQQQQQQQQQQQQ
RHQQQRHHHHNQHIQEQEGARGEEGLVMVVEEEKRKFLEKTKGFLAADGP
VELNTSVIPDDIRGSQNTFAPAPHSMSLDNSVGSHSKLCLLPLPPDQEWR
QQQQQQQHFSQKLGREEAGETEHPHTPQFPSFVFQQPQNHRQRYWQQQPQ
QRPQQLHQCISLSSFPSSSASRCVSMPVSTSLLGHRRHEAIPQEGMQLQL
LQQAEGAKAGSVFQAQQCMQFFPSQHQQEA*

Synonyms

Publications