jgi.p|Nanoce1779_2|639959, gene_5554 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|639959
Unique Namegene_5554
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_13:712675..725398 -

Link to JBrowse

Properties
Property NameValue
TranscriptId640045
ProteinId639959
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:712675..725398 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL014ncniL014Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03750NO12G03750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639959mRNA_5554-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639959mRNA_5554Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|639959

>mRNA_5554-protein ID=mRNA_5554-protein|Name=jgi.p|Nanoce1779_2|639959|organism=Nannochloropsis oceanica|type=polypeptide|length=1824bp
MEYEKRKKLIDDKDDDNTRCFSSIRALVERRSFSLSPSLRDTGAVPWSLV
LEDETAAVRLAFLAHDMPQGEEQEEGEEEEDDKDGGDAAATAFPLYASGI
WAAGRLEVISPVLKCEKMQPIAPSSLCSSSICASEQDDHQQQQQQQQQHR
HRQQQGKTLRGPSRAVLLLRLTSSSSSSSSSSPSSLPLIGVLLQSDKLLR
IQPLLQLQQSYYFPLLRPTTLQEVGGTEGAVGGEGDVSIFVALVPPVEMR
EGGREGGVLPSFLQKRPVGVFVHPEHRPWSLPTKQEWREAAHKNGKYDLS
APPSPSSSSSSSSSSSSSSSSSTTTIIPLFLGSTTLGLGPGLRRGARVRI
WNVHPICFGGQVQALGGCLWTRVDFLSFSPFPVALSAPYILPSNGQHRHR
SLAFLAWTIRLRGQLQRKAGREGGREGRVAWQQQRDEAKAALEPALYAWA
KRLSGLFALRMDPGATEVLSHIKGREPCPAVFGGLPRGRGGGRKEALSPP
TLVDVPPLSELRRLIASRARAMLEGRAGGRAGRRGGGWMAVLESAGKGRR
ETLDLGRVCGEEEEEEEEEEEEEEEEEGRGWGVLNASAVMGWVARGRGGG
GRGEGGGGRGEAECVLWDRTGRLPLLFLTEGGKEEGKEGQVQRLVGWREG
KGGGGAGRSPSTRCKDEGVVISDDGLEKHEAAVASLPWTPYPSSCSKKWE
KQEKEASATPSKEKQEQKEATGEMLVGVAGKHVRLLVEVVDWESGYDYVQ
RQQQQQQQQQQSREAVAEGEGGRVEGKEDPSRCEVLQSLLALDAATVRRG
NEYWDAPSLPFHVLSKRLETYRTNSSSSSSSRMNARIVLLGRLPPSSLLP
SPPPSLDTVRIYYYPHHLQTPAVLTPEPFVGSVVYTSRLRCRSKANRRVE
LCTSPGAIIRVVKTVFLGLARLSVMVICFKSPALMLRCRGCRKPSQWCDG
RRCQAPSLEPYWEVQCVVDDGTGQANVLADGELAVQLLRVEPVRRQRLER
ELRKRVAMASRGIGGGGGGGGMGRETIGEWLWAELFRDPSERGRRLRRLD
ILVHEILLKHGKGQSSSSSSSSPSSVLPSRPPYFDIKTRGGRGQERPTWS
LHMPALKAIYVQDMDARAEAYALFDAAGYALAYDSLAFIGTPTLQAKRNL
CLVLCRSPVTAVCFPWCRSTLPEADIELPTTKYYYDAHFRPYPAQNLVSS
RGVNYHAIDRREGDSNSSRDYPQSGRWTNEEHILFLQGLQLHGKDWKKIS
TMIETRSLVQIRSHAQKYFQKVTQAKQSGLSTLCGWSGEEDIQLLMDGKR
MATTTAFFHRQLQDHRYQQQQQEFQQQQHHLHYYHHQNQEQEEEAEEEEE
EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEQQQQQQHISGVS
SSSNSSSSISSKGSEAEREREDHEGLGVAIQIDSADLSWFDPFSDPQEQE
QHQQEQQYPQFQLQHHQEQQQQEQQQEQQQQYPQFQLQHHQEQQQQELQQ
EQEQQLYLQRHQQQQQQQQQQQQQQQKQHYCQQLKLQHYHHNHQQQRQQQ
LLLPQHQHHQEQQQEQQEQQQQQEQQQQQQQQQQQQQQQQQQQRHQQQRH
HHHNQHIQEQEGARGEEGLVMVVEEEKRKFLEKTKGFLAADGPVELNTSV
IPDDIRGSQNTFAPAPHSMSLDNSVGSHSKLCLLPLPPDQEWRQQQQQQQ
HFSQKLGREEAGETEHPHTPQFPSFVFQQPQNHRQRYWQQQPQQRPQQLH
QCISLSSFPSSSASRCVSMPVSTSLLGHRRHEAIPQEGMQLQLLQQAEGA
KAGSVFQAQQCMQFFPSQHQQEA*
back to top
Synonyms
Publications