NO12G03220, NO12G03220 (gene) Nannochloropsis oceanica

Overview
NameNO12G03220
Unique NameNO12G03220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4423
Alignment locationchr12:889617..894039 +

Link to JBrowse

Properties
Property NameValue
DescriptionActivating transcription factor 6
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:889617..894039 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR004827bZIP
Homology
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BLAST of NO12G03220 vs. NCBI_GenBank
Match: XP_005853482.1 (activating transcription factor 6 [Nannochloropsis gaditana CCMP526] >EKU22876.1 activating transcription factor 6 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 114.4 bits (285), Expect = 1.800e-21
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0 
Query:  252 KQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGLDTLDLARSAGGDVVRG 318
            KQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEG+DTL+ AR AGGD+VRG
Sbjct:  252 KQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRG 317
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BLAST of NO12G03220 vs. NCBI_GenBank
Match: EWM25725.1 (activating transcription factor 6 [Nannochloropsis gaditana])

HSP 1 Score: 114.4 bits (285), Expect = 1.800e-21
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0 
Query:  252 KQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGLDTLDLARSAGGDVVRG 318
            KQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEG+DTL+ AR AGGD+VRG
Sbjct:  252 KQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRG 317
[Close]
BLAST of NO12G03220 vs. NCBI_GenBank
Match: EWM25726.1 (activating transcription factor 6 [Nannochloropsis gaditana])

HSP 1 Score: 114.4 bits (285), Expect = 1.800e-21
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0 
Query:  252 KQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGLDTLDLARSAGGDVVRG 318
            KQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEG+DTL+ AR AGGD+VRG
Sbjct:  252 KQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEGVDTLESARDAGGDIVRG 317
The following BLAST results are available for this feature:
BLAST of NO12G03220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005853482.11.800e-2192.42activating transcription factor 6 [Nannochloropsis... [more]
EWM25725.11.800e-2192.42activating transcription factor 6 [Nannochloropsis... [more]
EWM25726.11.800e-2192.42activating transcription factor 6 [Nannochloropsis... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL129nonsL129Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR010ngnoR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010264NSK010264Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03220.1NO12G03220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592730gene_5498Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100087g2gene4788Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03220.1NO12G03220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03220 ID=NO12G03220|Name=NO12G03220|organism=Nannochloropsis oceanica|type=gene|length=4423bp
CACGCACCATTCTCAGCCGAAGCTAGGGCGCTTGATTTGGCACACTTGAC
CTTGTCCAACCGCTCCGCGGCCCAAGCATGCACTACGGACATTAGCTTTT
TGCTCAAAGGCGCAGGTGGTTCACGAGACGGGGGCGTCGTGTGTGGCTAG
GATAGCTCAAAGACCATCCCCCATATTGCTGCCCCTTTCTCTTCTCTCTG
TTGACGTTTCCACGCGCCCGCGTTCTTCCTGGTGGTCATCGGGCATGGCC
TGGGACCCAGGCCGGCTCCACAGGAACCCAAGGCATTCGAAGCGACAATG
TGCCGCAATCCATGATCCTACCAATCAGGTCGTTGCATTTGCTTGCTAGC
CCTCACGCAATCAATAATCTCCCCCCCTTCTTCTCACAAATGTCACCATA
GGACATCGCCCGATAGCACTGCACTAGCGGCGCTACCAACCACCGCCACT
TAGCGAGACACCATCGTCTCTCTTCCTGTACCCAGCCATCAACGGGAAAA
GTGGCCCACTCTCTGTCTCCGTCTGCCCCGCCGCCTTTTCGTCCTCGTAG
AGAGTGAAGCCCCCTTCCTCCTTGGTTGTCCTGTCTTGGACACACACCAG
GCACGCGAGGCGACACACACACCCGACACCAACATCACTGCTTTTCACAC
CGCCGCCTGCTCCCTGCTGGTATGGCCGCGGCGAGGGATGTGGGTGCTCA
GGACAATCTAGCCACAATCAAGAGTGAAATTGGTGCGACTTTTACGGCAG
GAGAAACAGAGAACAACAACAACCACAACAACAGCAACAATTTCATGCGC
ACCAGCAGCTCCAAGAAACAATGCCAACGCCAACGTGGGGCCTTGGGCGA
GGACTCGGCCATGCTTGAGATCGACGACGAGGTCAACGAGGATGACGGTA
CCTCCGGCAGCGGGATAACACCAGGCGGCAACAAGCTCATCAGTAACTGC
AGCGAAGGCAACGAGCGTTCATCCTCCACCTCCTCTTCCCCACCGTCTGA
AACTTCAACTTCACTATCTGCCTGGCCTGGCCATGGTGGACACAGGGGGA
GCGGGGAGAGCAGCGGCGGGAGCACAGGGCATGGTGAGGGAAGTACCAGC
AGCAGTGGAGGAGGAGGATCTTCGAATGAGTCGACGGGAGGGAGTTCCAC
AGCGAGTCAGGCAGCGGAGAGAAGGAAAGCACGGGCACGGAAGATGGGTT
TGTTGCAAAGTAGGGGAGAAAGGGATATGATACTGAGTGCCTCGCACATG
CAGCACCAGCAGCACCACCACAACCCCTTTGGAGACGATGATGAGGATGG
ACGGGGTGGAGGGAGGGAGGAGGACTTGCCGGGGAGTAGCTCGAGCTCGG
TGACGGGGGAAGTAACGATTATGAGACGGAGGAAAGACGCGGAGGACATG
GCGGCGGCGGTTGCCCTGACGAAGAAGCAATTGAGGATGATTCGGAACAG
GGAGTCAGCGGCGTTATCAAGGAAGAGGAAGAGGGATCAGGTGGAAGCTC
TCGAGCTAGAGGTAGAGGCATTGAAGGACAAGAATAGACAGCTGAAACAG
CGATTAGCGCGGTACGAAGGGCTGGATACTCTCGACTTAGCCCGAAGTGC
GGGGGGAGACGTGGTAAGGGGTAGTGGAGGGGTTGGGGGAGGATCTGGGG
GAGGGGGGGGCTTATTAGGTGTACCTTTGGCGTATGATTCTGGAGGAGTG
GGCGGAGGAGTGGGAGGGTTGTCGTGGCAGCAACAACAGCAGCAGCAGCA
GCAACAGCTAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCGTCGGCGGCAACAACAGCAGCAACGGCGGCAG
CAGCAGCAGCAGCAGCAGCAGGAGGAGGCGGAGGGGCAGCAGCAACAGCA
GATTACAAACTCAATGCTGGATGAGGCTGATTTTGACGAGTTCTACCAGC
CACTAGCCGGCGTTTTGGGGTTTGATCCTTCCCAGCTCCCCCCCGCCTCG
CTCTCTGCCTCGGCCCTCCCTCCGTCCTCCGTTTCGTCTTCCTCTTCCTC
TTCCTTGCACCAGCAGCCAATAAATTCAACAGCAATATCATCAGTAGCTG
AAGCCATGACCAACAAGGACAGTGGCAACAGCAGCAGTTGCGGTGGCGGT
GGTGGAAGAGGGAGGGGAGGAGGAGGAGGAGGACCTACCTACGCACGATT
AAGTCGATCTGCTGTGGGATACCTCGAGCCCCAGGAGCAGCAACAGCAGC
AACAACAGCAAAGAGCTCAGCAACAGCTTCGCCGGCAGCAGCTACTACAG
CAACAGCAGCTTCAAGAACAGCAGCAGCAACAACGCCAGCAGCAGCAGCA
ACAACAGCAAAAAGAGCAACAGGAACAGCAACGACAACAGCAACAACAAC
GCCAGGAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAA
CAACCACAACCACCACCCTCCTTGTGGGACGCATCGGATCTAATGCCCCT
AATGGACTCGACCACTGACTTCTACTACGGAGGAGGAGGAGGGGAGGGGG
AGGGAGGGAAGCCAAGAGGGAGGGATACAGGACAGACTCCTCATCAAACA
CAACAATCCAGGCTCCAGCAGCCACTGCAGCTGCAACTGCAGCAGCAACT
AAAGCAGCAACTAAAGCAGCAACTGCAGCAGCAGCAGCAGCAGCAGCAGC
AACTGCAGCAGCAGCAGCAACAGGGCTTGCGACCGCTTTCGCAACTTCAG
CAGCAGCAGAGGAGGCAACAGAAGAGCCCTCCTGATCAAATAGCTACAGG
CCCCGCCTCTTCGGTTACATTTGCTGACGCTAACGCTGCTGCTGGTCAAG
CGAATCGTGTCAGGAGCAGCAGCCACAGCAGCGGTATCAGTCGGAGGAGG
GGTCATGCGGCGTCAGCAGCTGATTTGGGAGGAGGAGGAGGAGGGGTGGG
GGAGGGATCACTGCAGCACTTCGACAGTGAAGACTGGGGTATACCTACCG
AATTTCAACCGGGAGGGGGAGGAGGAGGGAGCTTGAGCCTTGGAGGAGGA
GGCGGAGGGGGAGTAGGTGGGTCTTTGATTTCGCAGCGGCTGGGCATGGC
CAGGACGGGGAGTGGAGGCGCGAGCTATCCACAACAGTTGCCTTTGGAGC
AGAGGGGGATGGAGGAAGAGGGAGAGAGGGAGGGGGAAGGGGAAGGGAGA
ACGGGTTGTAATGATGAAAGGGGGACTTTCGGGAATTGGGAGGGAGATGA
GTATAATGGAGGGGGAGAAGGGGGGGGGGTATGGGGAATCGATCGTCTTC
AACATCGTCATGGGCGAATCAAAACCCGTGGTAGAAAGTGAGGGAGAGTA
GAAGAGATGTAGAGAAGGATGGACCCAGGGAAAATGTGTGGGAGAGAGAA
AAAGAGCTTTTGAGTCATTTTTCGGTTCTTTTTTGTGGTGTGTGTATGTG
TGTGTGCATGTGAATGTGTGCGAGAGACAAAAAAGCAGCAGCAAGAAGGG
AGCCTTTTTAATCACCCGTCCCAAAGAGAGAGGCAGAGATACATGTACAT
AATCCAGCCCACTAGTCCAACCATTTAATTATTATTAGCTTATATAATAA
ATATATCATTTCCACCATTATTATTATTTCTATTATTATTACAAATCTTA
TTATATTTCAACCTTTCATCACAATCGTGACGATGACAGTGACCAAGACG
AAGAGAAAGTGCAAGTGAGAAACACATTTACTGAAAGGTAGTGCGAAGAT
ATCGATGTCGATCCAGCCATCAATTTTGACCAGTCTTTTTCATAAGCAAG
CAGGGAAAAGAAAGCAGCGGATCTTGGCCCTATTAGTTTGCTTCGTTGTC
TGCCTTTCCCTAAAGAGGAGAGATGAAGAAAAAGAAGAGGAAAAAGTGGT
CAGAGAGAGCGTTGCCCCCTCTACAATTGAACCATCCATCTAGCTAGAGC
GCAACAAGAAAAACAGAATGAAAGGCAAAAGCACCAGCAAATCGCACATA
CTTACGAAACAAGCAGAGGCAGCCACAGGAGCAGCAGCAGGGACTGCCAC
AGCAGCAATCTAAATTCGACCTGCCCTGAGGAGTCAGGTTGCAGACAACG
AAAGAGAGGGACGAGAGATGAAGAAAACAAGCGTTTTCCCCAGGGGTCAT
TATCTTTGTGAAATGGTAGGCAACGCACCAAGAAAAAAAGGCAAGAGGAT
CAAGAAGAACAAGGATATAGGAGAAGAGAAACAGGACGAATGATAAGCAA
AAAGCAAGAAAGGGGAAGAAAGGCGCAAGGGAGAGATACCCTGAGAAGAA
AAGAAGAGGGCGAACGACGTGGTGACGTTGACGTCCAGAAACAGCCAAGG
CAAAATTGATACCGCGCGTTCATGAGCATTTATCCATTTTTCCCGTCCAT
ACGATATCTTCTGTATATGTCGG
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protein sequence of NO12G03220.1

>NO12G03220.1-protein ID=NO12G03220.1-protein|Name=NO12G03220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=890bp
MAAARDVGAQDNLATIKSEIGATFTAGETENNNNHNNSNNFMRTSSSKKQ
CQRQRGALGEDSAMLEIDDEVNEDDGTSGSGITPGGNKLISNCSEGNERS
SSTSSSPPSETSTSLSAWPGHGGHRGSGESSGGSTGHGEGSTSSSGGGGS
SNESTGGSSTASQAAERRKARARKMGLLQSRGERDMILSASHMQHQQHHH
NPFGDDDEDGRGGGREEDLPGSSSSSVTGEVTIMRRRKDAEDMAAAVALT
KKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEG
LDTLDLARSAGGDVVRGSGGVGGGSGGGGGLLGVPLAYDSGGVGGGVGGL
SWQQQQQQQQQQLEQQQQQQQQQQQQQQQQQQRRRQQQQQRRQQQQQQQQ
EEAEGQQQQQITNSMLDEADFDEFYQPLAGVLGFDPSQLPPASLSASALP
PSSVSSSSSSSLHQQPINSTAISSVAEAMTNKDSGNSSSCGGGGGRGRGG
GGGGPTYARLSRSAVGYLEPQEQQQQQQQQRAQQQLRRQQLLQQQQLQEQ
QQQQRQQQQQQQQKEQQEQQRQQQQQRQEQQQQQQQQQQQQQQQPQPPPS
LWDASDLMPLMDSTTDFYYGGGGGEGEGGKPRGRDTGQTPHQTQQSRLQQ
PLQLQLQQQLKQQLKQQLQQQQQQQQQLQQQQQQGLRPLSQLQQQQRRQQ
KSPPDQIATGPASSVTFADANAAAGQANRVRSSSHSSGISRRRGHAASAA
DLGGGGGGVGEGSLQHFDSEDWGIPTEFQPGGGGGGSLSLGGGGGGGVGG
SLISQRLGMARTGSGGASYPQQLPLEQRGMEEEGEREGEGEGRTGCNDER
GTFGNWEGDEYNGGGEGGGVWGIDRLQHRHGRIKTRGRK*
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Synonyms
Publications