NO12G02860, NO12G02860 (gene) Nannochloropsis oceanica

Overview
NameNO12G02860
Unique NameNO12G02860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1578
Alignment locationchr12:796739..798316 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:796739..798316 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO12G02860 vs. NCBI_GenBank
Match: EWM25772.1 (hypothetical protein Naga_100168g1 [Nannochloropsis gaditana])

HSP 1 Score: 108.6 bits (270), Expect = 2.600e-20
Identity = 84/193 (43.52%), Postives = 104/193 (53.89%), Query Frame = 0 
Query:   67 SCASSQPRW-SSSVRITRTPLVAVP----LIGLLLLTILPLPTSAFMIPGVKST----GSRAATKS----HPVLGL--------------CPLSCSVI------CATSTXXXXIFGAGATSYDD--EKEGEQVLSLHTLEIPLQDDPGNYRTFLEEYFKGSNLLRWHLGSVDTEKGVAHAEVVIVSSTGVTVP 225
            S  +++PR+ SS +  T   L+ +P    LIGL    +L   TSAF++P   +T    GS A T S    HP LG                 L   V+          T    IFG  + +     EKE E+VLSLHTLE+PLQDDPG YR FLE YFKGS +LRWHLGSVDT K VAHAEVV+VS + +  P
Sbjct:    9 SKGTARPRYHSSPLSFTIICLINMPAVLLLIGLYSAIVLSQLTSAFLLPTASNTPYLGGSSATTGSLFRVHPDLGRRLLFSARHTRQKQPTSLMTDVMVFERNSSNDGTETDSIFGEPSLNALSALEKEEERVLSLHTLEVPLQDDPGTYRDFLETYFKGSTILRWHLGSVDTVKRVAHAEVVVVSPSNLRPP 201
The following BLAST results are available for this feature:
BLAST of NO12G02860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25772.12.600e-2043.52hypothetical protein Naga_100168g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL127nonsL127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR009ngnoR009Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010219NSK010219Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02860.1NO12G02860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100168g1gene4756Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02860.1NO12G02860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02860 ID=NO12G02860|Name=NO12G02860|organism=Nannochloropsis oceanica|type=gene|length=1578bp
GTGTTAAAGCCAGAAGTGCGGGTAAGATGCCGGAAGAATATCTCATGACA
GTACTATTGTCATCGTGCTCGTGTCGCTTGTGCAAGACTGAGAAAGGGGC
AAACAAATACGTACCAGCATGGCCGGACGGATGGAGAAGCTTCTCTCGCT
TCCACCAGCACGATCAAAGGCCTGTTGCTTGCTTGGACACTTCTTCACCA
CATCACAGACAGGACCAATCCACATTCACACATCGCACCCACATCTACAC
ATTCACAGATTCACACTGCCTGCAGAAAGCTGCATCGAAATCATCATGTC
CTCGGCAACACTCTTCTCCTGCGCCTCCAGTCAGCCCCGCTGGTCGAGCT
CCGTGCGTATCACGCGCACACCACTGGTGGCTGTGCCACTGATCGGGCTC
CTTCTCCTTACAATACTACCTCTACCTACCTCTGCCTTTATGATTCCTGG
TGTGAAGAGCACCGGTTCGCGGGCCGCCACCAAGAGTCACCCCGTGCTGG
GCCTCTGCCCTCTTTCTTGTTCCGTCATCTGCGCCACGTCCACAACCACC
ACAACAATTTTCGGGGCTGGAGCCACTAGTTACGACGACGAAAAAGAGGG
CGAACAAGTGCTGAGTTTGCACACGCTCGAGATTCCTTTGCAAGACGATC
CGGGGAATTACCGCACGTTCTTGGAGGAGTACTTCAAGGGCTCGAATCTC
CTTCGTTGGCATTTGGGGTCGGTGGACACAGAGAAGGGCGTGGCGCACGC
AGAAGTGGTGATTGTAAGCTCAACAGGGGTGACAGTGCCGTTGTCTCCCT
AGCCTTATTCACCGGGGAAGCAGGGTGTTGGCCCGCTCCTTGTGTGTTTC
GCGTAATAGAAAGAGAGATGGCGCCAAATGGATAATGCGATGACAAACGC
AAGCGCGTTTCCCGGATCTTCACAGTCCATGTTTGCTGCTTACGCTGACA
CTCTATCGTTTGGGCTTAGTAACTGTGCGGTCAGTGGCCAGCATCGGTGC
ACAATGCCCGAATTAGAGGGCAGCAGTACAAGCGGCGTCATGACTCCTGC
CGGCGTTCTTTTCAAGTTTGAGGAGGTTGACTCACTGATATATCCGGACG
ACCCGGGTGAGGTCGTGAGCAACAATTTTCATCGTACACAGGATATGGTT
TGCTGCAAAGTATGGCTGGAAAATTTCGGCGTTCTTTTTGCCTGGCTTTG
CGTATGATGACTTGGATAAACTCCAGCTTCACACCTGTCTATTCCGAGTA
AGGGCGACGACCGGTGTGGTAGAAGTAGCACTGCTGAGAGCTTGTGCGCA
ATCTTTGGTGTCCTGTCCCGGGCATGGGGATTGAGGTCAAGGGGAAATGG
TTACAGGGGCGGGGTCGCCAGCGAGTATTTTACATGTACATCCCTTCTAT
TGTGCAGTTTACCGGGCATTTTTTGGTTTGAGATTTAGCAAACGTGTTAT
GGTTTGAGGCCCATCCAGACGCGTGCACACTGAACAATTAGTCTGCATGG
GTTTGAGCAAAAGATATAATTCCGCACGAAGAAATGGCGGCGCTGATCTC
TTTGTCAATTTATTTTGTTCTCTTGGTG
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protein sequence of NO12G02860.1

>NO12G02860.1-protein ID=NO12G02860.1-protein|Name=NO12G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MAGRMEKLLSLPPARSKACCLLGHFFTTSQTGPIHIHTSHPHLHIHRFTL
PAESCIEIIMSSATLFSCASSQPRWSSSVRITRTPLVAVPLIGLLLLTIL
PLPTSAFMIPGVKSTGSRAATKSHPVLGLCPLSCSVICATSTTTTTIFGA
GATSYDDEKEGEQVLSLHTLEIPLQDDPGNYRTFLEEYFKGSNLLRWHLG
SVDTEKGVAHAEVVIVSSTGVTVPLSP*
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Synonyms
Publications