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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:796739..798316 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G02860.1 vs.
Match: EWM25772.1 (hypothetical protein Naga_100168g1 [Nannochloropsis gaditana]) HSP 1 Score: 109.8 bits (273), Expect = 1.200e-20 Identity = 85/193 (44.04%), Postives = 106/193 (54.92%), Query Frame = 0
Query: 67 SCASSQPRWSSS-VRITRTPLVAVP----LIGLLLLTILPLPTSAFMIPGVKST----GSRAATKS----HPVLGL--------------CPLSCSVICAT------STTTTTIFGAGATSYDD--EKEGEQVLSLHTLEIPLQDDPGNYRTFLEEYFKGSNLLRWHLGSVDTEKGVAHAEVVIVSSTGVTVP 225
S +++PR+ SS + T L+ +P LIGL +L TSAF++P +T GS A T S HP LG L V+ T T +IFG + + EKE E+VLSLHTLE+PLQDDPG YR FLE YFKGS +LRWHLGSVDT K VAHAEVV+VS + + P
Sbjct: 9 SKGTARPRYHSSPLSFTIICLINMPAVLLLIGLYSAIVLSQLTSAFLLPTASNTPYLGGSSATTGSLFRVHPDLGRRLLFSARHTRQKQPTSLMTDVMVFERNSSNDGTETDSIFGEPSLNALSALEKEEERVLSLHTLEVPLQDDPGTYRDFLETYFKGSTILRWHLGSVDTVKRVAHAEVVVVSPSNLRPP 201
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G02860.1 ID=NO12G02860.1|Name=NO12G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1578bp GTGTTAAAGCCAGAAGTGCGGGTAAGATGCCGGAAGAATATCTCATGACA GTACTATTGTCATCGTGCTCGTGTCGCTTGTGCAAGACTGAGAAAGGGGC AAACAAATACGTACCAGCATGGCCGGACGGATGGAGAAGCTTCTCTCGCT TCCACCAGCACGATCAAAGGCCTGTTGCTTGCTTGGACACTTCTTCACCA CATCACAGACAGGACCAATCCACATTCACACATCGCACCCACATCTACAC ATTCACAGATTCACACTGCCTGCAGAAAGCTGCATCGAAATCATCATGTC CTCGGCAACACTCTTCTCCTGCGCCTCCAGTCAGCCCCGCTGGTCGAGCT CCGTGCGTATCACGCGCACACCACTGGTGGCTGTGCCACTGATCGGGCTC CTTCTCCTTACAATACTACCTCTACCTACCTCTGCCTTTATGATTCCTGG TGTGAAGAGCACCGGTTCGCGGGCCGCCACCAAGAGTCACCCCGTGCTGG GCCTCTGCCCTCTTTCTTGTTCCGTCATCTGCGCCACGTCCACAACCACC ACAACAATTTTCGGGGCTGGAGCCACTAGTTACGACGACGAAAAAGAGGG CGAACAAGTGCTGAGTTTGCACACGCTCGAGATTCCTTTGCAAGACGATC CGGGGAATTACCGCACGTTCTTGGAGGAGTACTTCAAGGGCTCGAATCTC CTTCGTTGGCATTTGGGGTCGGTGGACACAGAGAAGGGCGTGGCGCACGC AGAAGTGGTGATTGTAAGCTCAACAGGGGTGACAGTGCCGTTGTCTCCCT AGCCTTATTCACCGGGGAAGCAGGGTGTTGGCCCGCTCCTTGTGTGTTTC GCGTAATAGAAAGAGAGATGGCGCCAAATGGATAATGCGATGACAAACGC AAGCGCGTTTCCCGGATCTTCACAGTCCATGTTTGCTGCTTACGCTGACA CTCTATCGTTTGGGCTTAGTAACTGTGCGGTCAGTGGCCAGCATCGGTGC ACAATGCCCGAATTAGAGGGCAGCAGTACAAGCGGCGTCATGACTCCTGC CGGCGTTCTTTTCAAGTTTGAGGAGGTTGACTCACTGATATATCCGGACG ACCCGGGTGAGGTCGTGAGCAACAATTTTCATCGTACACAGGATATGGTT TGCTGCAAAGTATGGCTGGAAAATTTCGGCGTTCTTTTTGCCTGGCTTTG CGTATGATGACTTGGATAAACTCCAGCTTCACACCTGTCTATTCCGAGTA AGGGCGACGACCGGTGTGGTAGAAGTAGCACTGCTGAGAGCTTGTGCGCA ATCTTTGGTGTCCTGTCCCGGGCATGGGGATTGAGGTCAAGGGGAAATGG TTACAGGGGCGGGGTCGCCAGCGAGTATTTTACATGTACATCCCTTCTAT TGTGCAGTTTACCGGGCATTTTTTGGTTTGAGATTTAGCAAACGTGTTAT GGTTTGAGGCCCATCCAGACGCGTGCACACTGAACAATTAGTCTGCATGG GTTTGAGCAAAAGATATAATTCCGCACGAAGAAATGGCGGCGCTGATCTC TTTGTCAATTTATTTTGTTCTCTTGGTG back to topprotein sequence of NO12G02860.1 >NO12G02860.1-protein ID=NO12G02860.1-protein|Name=NO12G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp MAGRMEKLLSLPPARSKACCLLGHFFTTSQTGPIHIHTSHPHLHIHRFTL PAESCIEIIMSSATLFSCASSQPRWSSSVRITRTPLVAVPLIGLLLLTIL PLPTSAFMIPGVKSTGSRAATKSHPVLGLCPLSCSVICATSTTTTTIFGA GATSYDDEKEGEQVLSLHTLEIPLQDDPGNYRTFLEEYFKGSNLLRWHLG SVDTEKGVAHAEVVIVSSTGVTVPLSP* back to topmRNA from alignment at chr12:796739..798316+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G02860.1 ID=NO12G02860.1|Name=NO12G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1578bp|location=Sequence derived from alignment at chr12:796739..798316+ (Nannochloropsis oceanica) GTGTTAAAGCCAGAAGTGCGGGTAAGATGCCGGAAGAATATCTCATGACA
GTACTATTGTCATCGTGCTCGTGTCGCTTGTGCAAGACTGAGAAAGGGGC
AAACAAATACGTACCAGCATGGCCGGACGGATGGAGAAGCTTCTCTCGCT
TCCACCAGCACGATCAAAGGCCTGTTGCTTGCTTGGACACTTCTTCACCA
CATCACAGACAGGACCAATCCACATTCACACATCGCACCCACATCTACAC
ATTCACAGATTCACACTGCCTGCAGAAAGCTGCATCGAAATCATCATGTC
CTCGGCAACACTCTTCTCCTGCGCCTCCAGTCAGCCCCGCTGGTCGAGCT
CCGTGCGTATCACGCGCACACCACTGGTGGCTGTGCCACTGATCGGGCTC
CTTCTCCTTACAATACTACCTCTACCTACCTCTGCCTTTATGATTCCTGG
TGTGAAGAGCACCGGTTCGCGGGCCGCCACCAAGAGTCACCCCGTGCTGG
GCCTCTGCCCTCTTTCTTGTTCCGTCATCTGCGCCACGTCCACAACCACC
ACAACAATTTTCGGGGCTGGAGCCACTAGTTACGACGACGAAAAAGAGGG
CGAACAAGTGCTGAGTTTGCACACGCTCGAGATTCCTTTGCAAGACGATC
CGGGGAATTACCGCACGTTCTTGGAGGAGTACTTCAAGGGCTCGAATCTC
CTTCGTTGGCATTTGGGGTCGGTGGACACAGAGAAGGGCGTGGCGCACGC
AGAAGTGGTGATTGTAAGCTCAACAGGGGTGACAGTGCCGTTGTCTCCCT
AGCCTTATTCACCGGGGAAGCAGGGTGTTGGCCCGCTCCTTGTGTGTTTC
GCGTAATAGAAAGAGAGATGGCGCCAAATGGATAATGCGATGACAAACGC
AAGCGCGTTTCCCGGATCTTCACAGTCCATGTTTGCTGCTTACGCTGACA
CTCTATCGTTTGGGCTTAGTAACTGTGCGGTCAGTGGCCAGCATCGGTGC
ACAATGCCCGAATTAGAGGGCAGCAGTACAAGCGGCGTCATGACTCCTGC
CGGCGTTCTTTTCAAGTTTGAGGAGGTTGACTCACTGATATATCCGGACG
ACCCGGGTGAGGTCGTGAGCAACAATTTTCATCGTACACAGGATATGGTT
TGCTGCAAAGTATGGCTGGAAAATTTCGGCGTTCTTTTTGCCTGGCTTTG
CGTATGATGACTTGGATAAACTCCAGCTTCACACCTGTCTATTCCGAGTA
AGGGCGACGACCGGTGTGGTAGAAGTAGCACTGCTGAGAGCTTGTGCGCA
ATCTTTGGTGTCCTGTCCCGGGCATGGGGATTGAGGTCAAGGGGAAATGG
TTACAGGGGCGGGGTCGCCAGCGAGTATTTTACATGTACATCCCTTCTAT
TGTGCAGTTTACCGGGCATTTTTTGGTTTGAGATTTAGCAAACGTGTTAT
GGTTTGAGGCCCATCCAGACGCGTGCACACTGAACAATTAGTCTGCATGG
GTTTGAGCAAAAGATATAATTCCGCACGAAGAAATGGCGGCGCTGATCTC
TTTGTCAATTTATTTTGTTCTCTTGGTG back to topCoding sequence (CDS) from alignment at chr12:796739..798316+ >NO12G02860.1 ID=NO12G02860.1|Name=NO12G02860.1|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at chr12:796739..798316+ (Nannochloropsis oceanica) ATGGCCGGACGGATGGAGAAGCTTCTCTCGCTTCCACCAGCACGATCAAA GGCCTGTTGCTTGCTTGGACACTTCTTCACCACATCACAGACAGGACCAA TCCACATTCACACATCGCACCCACATCTACACATTCACAGATTCACACTG CCTGCAGAAAGCTGCATCGAAATCATCATGTCCTCGGCAACACTCTTCTC CTGCGCCTCCAGTCAGCCCCGCTGGTCGAGCTCCGTGCGTATCACGCGCA CACCACTGGTGGCTGTGCCACTGATCGGGCTCCTTCTCCTTACAATACTA CCTCTACCTACCTCTGCCTTTATGATTCCTGGTGTGAAGAGCACCGGTTC GCGGGCCGCCACCAAGAGTCACCCCGTGCTGGGCCTCTGCCCTCTTTCTT GTTCCGTCATCTGCGCCACGTCCACAACCACCACAACAATTTTCGGGGCT GGAGCCACTAGTTACGACGACGAAAAAGAGGGCGAACAAGTGCTGAGTTT GCACACGCTCGAGATTCCTTTGCAAGACGATCCGGGGAATTACCGCACGT TCTTGGAGGAGTACTTCAAGGGCTCGAATCTCCTTCGTTGGCATTTGGGG TCGGTGGACACAGAGAAGGGCGTGGCGCACGCAGAAGTGGTGATTGTAAG CTCAACAGGGGTGACAGTGCCGTTGTCTCCCTAG back to top
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