NO12G02630, NO12G02630 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G02630 vs. NCBI_GenBank
Match: EWM25765.1 (light harvesting complex protein [Nannochloropsis gaditana]) HSP 1 Score: 386.3 bits (991), Expect = 5.800e-104 Identity = 187/205 (91.22%), Postives = 197/205 (96.10%), Query Frame = 0 Query: 1 MKCAMVVLGSLAMASAFVPAAPKMSRTRGVARMAVNEILGADVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWFSEFYHPLYDGKISPGLKAIGELPGAAWLQILAAIAVVELTIGKQDTENKAPGDLGFGLNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQEGLTGQTCFEQIAAQHLSPFGDGQGFF 206 MK AMV++GSLA+ASAFVPAAPKMSRTRG+ RMAVN+ILG+DVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLW SEFYHPLYDGKISPG+KAIGELPG AWLQILA I V+ELT+GKQDTENKAPGDLGFG NFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQE +TGQTCFEQIAAQHLSPFGDGQGFF Sbjct: 1 MKSAMVLVGSLAVASAFVPAAPKMSRTRGMTRMAVNDILGSDVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWVSEFYHPLYDGKISPGIKAIGELPGPAWLQILATIGVIELTVGKQDTENKAPGDLGFGYNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQESITGQTCFEQIAAQHLSPFGDGQGFF 205
BLAST of NO12G02630 vs. NCBI_GenBank
Match: CEM02552.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 276.6 bits (706), Expect = 6.400e-71 Identity = 137/207 (66.18%), Postives = 164/207 (79.23%), Query Frame = 0 Query: 5 MVVLGSLAMASAFVPAAP------KMSRTRGVARMAVNEILGADVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWFSEFYHPLYDGKISPGLKAIGELPGAAWLQILAAIAVVELTIGKQDTENKAPGDLGFGLNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQEGLTGQTCFEQIAAQHLSPFGDGQGFF 206 MV +A ASAFVP+AP SR R RMAV +++GADVET GVWDPL FSKDE SLYRYRAVELKHGR+AMLAVLG + +E +HPLYDGK+ PGLKAI ++P A WLQILA IA +EL+IGKQD EN+APGDLGFG+ NPF+NDP +FA+LQLKE+KNGRLAM+ AG+L+QE +TGQT +Q+ H+SPFGDGQG F Sbjct: 5 MVFAALIAAASAFVPSAPLRGLDKLQSRDRTAPRMAVEDMIGADVETRGVWDPLGFSKDESSLYRYRAVELKHGRVAMLAVLGYFVAELWHPLYDGKVEPGLKAISQVPSAGWLQILATIAAIELSIGKQDFENRAPGDLGFGI--NPFENDPVEFAKLQLKEIKNGRLAMIAIAGMLVQELVTGQTTLQQLREGHISPFGDGQGLF 209
BLAST of NO12G02630 vs. NCBI_GenBank
Match: CBJ30555.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 253.1 bits (645), Expect = 7.600e-64 Identity = 129/206 (62.62%), Postives = 160/206 (77.67%), Query Frame = 0 Query: 10 SLAMASAFVP---------AAPKMSRTRGVARMAVNEILGADVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWFSEFYHPLYDGKISPGLKAIGELPGAAWLQILAAIAVVELTIGKQDTENKAPGDLG-FGLNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQEGLTGQTCFEQIAAQHLSPFGDGQGFF 206 +LA +AFV A P+ + + + +MAVN++LGADVET GV+DPL + KD+ SL+R RAVELKHGR+AMLAV G F+E +HPLYDGK+SPGLKA+GELP AAW+QIL AIAVVELT+GKQD ENKAPG+LG FG +NP+ ++P F++LQLKELKNGRLAML G ++QE LTGQT EQ+ + HLSPFGDGQG F Sbjct: 11 TLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 216
BLAST of NO12G02630 vs. NCBI_GenBank
Match: EWM30498.1 (light-harvesting protein [Nannochloropsis gaditana]) HSP 1 Score: 208.4 bits (529), Expect = 2.200e-50 Identity = 117/210 (55.71%), Postives = 140/210 (66.67%), Query Frame = 0 Query: 1 MKCAMVVLGSLAMASAFVPAAPKMSRTRGVARMAVNEILGADVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWFSEFYHPLYDGKISPG-----LKAIGELPGAAWLQILAAIAVVELTIGKQDTENKAPGDLGFGLNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQEGLTGQTCFEQIAAQHLSPFGDGQGFF 206 MK A L L +++AF+P AP+M+R R V RMAVNE++G+DVET GV+DPL +KDE SLYR R +ELKHGR+AMLA LG FYH + +P + E P A W QI AI +ELTIGKQDT N+APGD+GFG F P +D E FA LQLKELKNGRLAM+ G +QE LTGQ EQ+ H SPFGDGQG F Sbjct: 1 MKTAFAFLALLGVSTAFMPTAPRMTRGRSV-RMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALAQVYSERPVAFW-QIFLAIGAIELTIGKQDTANRAPGDVGFGAAFIP--DDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPFGDGQGAF 206
BLAST of NO12G02630 vs. NCBI_GenBank
Match: EWM28183.1 (light harvesting complex protein [Nannochloropsis gaditana]) HSP 1 Score: 183.7 bits (465), Expect = 5.700e-43 Identity = 102/214 (47.66%), Postives = 143/214 (66.82%), Query Frame = 0 Query: 1 MKCAMVVLGSLAMASAFVPAAPKMSRT----RGVARMAVNEILGADVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWFSEFYH---PLYDG--KISPGLKAIGELPGAAWLQILAAIAVVELTIGKQDTENKAPGDLGFGLNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQEGLTGQTCFEQIAAQHLSPFGDGQGFF 206 M A+V+LG L+ A+AF+PA ++ + + +V++++GAD ETGG+WDPL S++EGSL +YR ELKHGR+AM A+LG++ YH P++ ++ + + P A W QI+ + V+E T G+Q E++APGDL FG +F P ++F ELQLKELKNGRLAM+ + G LLQE LTGQ EQ+ A HL+PFGDGQGFF Sbjct: 1 MMRAVVLLGLLSSAAAFIPATFNTGKSSYARKNLVVASVSDLIGADTETGGIWDPLGLSQNEGSLRKYRECELKHGRVAMAAMLGIFVQGLYHLPDPVFSNPRPLAALQQVYEQRPEAIW-QIIVGLGVIEFTGGRQ-KEDRAPGDLNFGSSFIP--KSEKEFEELQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLAGHLNPFGDGQGFF 210
BLAST of NO12G02630 vs. NCBI_GenBank
Match: CEM27246.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 177.2 bits (448), Expect = 5.300e-41 Identity = 114/216 (52.78%), Postives = 147/216 (68.06%), Query Frame = 0 Query: 1 MKC-AMVVLGSLAMA----SAFVPAAPKMS-RTRGVAR-----MAVNEILGADVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWFSEFYHPLYD------GKISPGLKAIGELPGAAWLQILAAIAVVELTIGKQDTENKAPGDLG-FGLNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQEGLTGQTCFEQIAAQHLSPF 199 MKC A+ L +A+A +AFVP+AP S TR R M+V E++GADVETGGV+DPL FS+DE SL+R RAVELKHGR+AMLA LG + L D +S K + E P AA QI+AAIA +EL G+QD ENKAPGDLG FG +F +DPE+F + QL+ELKNGRLAM+G G+++QEGLTGQ+ +EQI + +++PF Sbjct: 1 MKCVAVASLLLIAVAYGEEAAFVPSAPLRSLPTRRALRSTTPKMSVEEMIGADVETGGVFDPLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPDPVFSEPRPLSALTKVLTERPWAA-AQIVAAIAAIELGPGRQDYENKAPGDLGYFGDSFK--NSDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQIGSGNINPF 213
BLAST of NO12G02630 vs. NCBI_GenBank
Match: EWM29860.1 (light-harvesting protein [Nannochloropsis gaditana]) HSP 1 Score: 162.9 bits (411), Expect = 1.000e-36 Identity = 96/178 (53.93%), Postives = 119/178 (66.85%), Query Frame = 0 Query: 33 MAVNEILGADVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWFSEFYHPLYDGKISP-GLKAIGELPG---AAWLQILAAIAVVELTIGKQDTENKAPGDLG-FGLNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQEGLTGQTCFEQIAAQHLSPFGDGQGFF 206 M+ ++++G DVETGG++DPL FSKDE SLY+YR VELKHGR+AMLA LG + H D +P L A+G+L A LQI+ AI ++E+T GKQD E APG LG FG F P + A +QLKELKNGRLAM+ G +QE LTGQ EQI + H+SPFGDGQG F Sbjct: 1 MSASDMIGIDVETGGLFDPLGFSKDEQSLYKYRQVELKHGRVAMLACLGTLVQSYTHLPDDVFSNPRPLGALGQLLSERPLAILQIVIAITLIEVTSGKQDPE-LAPGQLGRFGEAFKP--EGEAEMAAVQLKELKNGRLAMVAIIGQWVQELLTGQGPIEQITSGHISPFGDGQGLF 175
BLAST of NO12G02630 vs. NCBI_GenBank
Match: CEM11606.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 160.2 bits (404), Expect = 6.700e-36 Identity = 101/215 (46.98%), Postives = 132/215 (61.40%), Query Frame = 0 Query: 3 CAMVVLGSLAMASAFVPAAPKMS--RTRGVARM-----AVNEILGADVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWFSEFYH---PLYDG-KISPGLKAIGELPGAAWLQILAAIAVVELTIGKQDTENKAPGDL-GFGLNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQEGLTGQTCFEQIAAQHLSPFGDGQGFF 206 CA+ +L + A AFVP R+RG AR AV+++ GADVETGGVWDPL S++E +L YRA ELKHGR+ M+AVLG+ ++ P+++ + + + + A +QIL AI EL +Q E+ PG L FG F P D KF ELQ KELKNGRLAM+G +G+L+QE LTGQ EQI H+SPFGDGQG+F Sbjct: 6 CAIALL--VVGAHAFVPPTGFQGALRSRGAARPATTMGAVDQLAGADVETGGVWDPLGLSQNEDALSLYRAAELKHGRVCMMAVLGVIVQTYFQLPDPVFNNPRPLEAIVQVWQQRPEAIIQILLAIGATELYFLRQSPED-PPGSLQNFGAAFRP--RDEAKFEELQRKELKNGRLAMIGISGMLVQEALTGQGPLEQIQVGHISPFGDGQGYF 215
BLAST of NO12G02630 vs. NCBI_GenBank
Match: XP_005853581.1 (light harvesting complex protein [Nannochloropsis gaditana CCMP526] >EKU22777.1 light harvesting complex protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 157.1 bits (396), Expect = 5.700e-35 Identity = 90/199 (45.23%), Postives = 130/199 (65.33%), Query Frame = 0 Query: 1 MKCAMVVLGSLAMASAFVPAAPKMSRT----RGVARMAVNEILGADVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWFSEFYH---PLYDG--KISPGLKAIGELPGAAWLQILAAIAVVELTIGKQDTENKAPGDLGFGLNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQEGLTGQTCFEQI 191 M A+V+LG L+ A+AF+PA ++ + + +V++++GAD ETGG+WDPL S++EGSL +YR ELKHGR+AM A+LG++ YH P++ ++ + + P A W QI+ + V+E T G+Q E++APGDL FG +F P ++F ELQLKELKNGRLAM+ + G LLQE LTGQ EQ+ Sbjct: 1 MMRAVVLLGLLSSAAAFIPATFNTGKSSYARKNLVVASVSDLIGADTETGGIWDPLGLSQNEGSLRKYRECELKHGRVAMAAMLGIFVQGLYHLPDPVFSNPRPLAALQQVYEQRPEAIW-QIIVGLGVIEFTGGRQ-KEDRAPGDLNFGSSFIP--KSEKEFEELQLKELKNGRLAMVASMGALLQEYLTGQGPVEQV 195
BLAST of NO12G02630 vs. NCBI_GenBank
Match: XP_005852776.1 (light-harvesting protein [Nannochloropsis gaditana CCMP526] >EKU23058.1 light-harvesting protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 147.5 bits (371), Expect = 4.500e-32 Identity = 103/219 (47.03%), Postives = 131/219 (59.82%), Query Frame = 0 Query: 1 MKCAMVVLGSLAMASAF-----VPAAPKMSRTRGVARMAVNEILGADVETGGVWDPLNF--SKDEGSLYRYRAVELKHGRLAMLAVLGLWFSEFYHPLYDG------KISPGLKAIGELPGAAWLQILAAIAVVELTIGKQDTENKAPGDLGFG-LNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQEGLTGQTCFEQIAAQHLSPFGDGQGFF 206 M+ A ++ +LA ASAF +P++ RT+G M ++ I+G+DVE +DPL +KDE +L YRA ELKHGR+ MLA +G YH L DG I LK E P AA +QI AIA +E+ +G + APGDL F L P DPE+ AELQLKELKNGRLAML AG+ QE +TGQ EQ+ + H+SPFGDGQG F Sbjct: 1 MRVAAALIATLATASAFLAPASLPSSSSFRRTQGRVSMDISGIVGSDVEV-PEFDPLGLAKNKDEETLGWYRAAELKHGRVCMLASVGYLVQGLYH-LPDGPFEASKPIDALLKVSSERPLAA-VQIAIAIAALEV-LGASIQKYTAPGDLTFDPLGLKP--EDPEELAELQLKELKNGRLAMLATAGLAAQEYVTGQGPVEQLLSGHISPFGDGQGAF 213 The following BLAST results are available for this feature:
BLAST of NO12G02630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G02630 ID=NO12G02630|Name=NO12G02630|organism=Nannochloropsis oceanica|type=gene|length=1438bpback to top protein sequence of NO12G02630.1 >NO12G02630.1-protein ID=NO12G02630.1-protein|Name=NO12G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=206bpback to top Synonyms
Publications
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