NO12G02630.1, NO12G02630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02630.1
Unique NameNO12G02630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length804
Alignment locationchr12:743865..745302 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:743865..745302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02630.1 vs.
Match: EWM25765.1 (light harvesting complex protein [Nannochloropsis gaditana])

HSP 1 Score: 386.3 bits (991), Expect = 5.800e-104
Identity = 187/205 (91.22%), Postives = 197/205 (96.10%), Query Frame = 0 
Query:    1 MKCAMVVLGSLAMASAFVPAAPKMSRTRGVARMAVNEILGADVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWFSEFYHPLYDGKISPGLKAIGELPGAAWLQILAAIAVVELTIGKQDTENKAPGDLGFGLNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQEGLTGQTCFEQIAAQHLSPFGDGQGFF 206
            MK AMV++GSLA+ASAFVPAAPKMSRTRG+ RMAVN+ILG+DVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLW SEFYHPLYDGKISPG+KAIGELPG AWLQILA I V+ELT+GKQDTENKAPGDLGFG NFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQE +TGQTCFEQIAAQHLSPFGDGQGFF
Sbjct:    1 MKSAMVLVGSLAVASAFVPAAPKMSRTRGMTRMAVNDILGSDVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWVSEFYHPLYDGKISPGIKAIGELPGPAWLQILATIGVIELTVGKQDTENKAPGDLGFGYNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQESITGQTCFEQIAAQHLSPFGDGQGFF 205
The following BLAST results are available for this feature:
BLAST of NO12G02630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25765.15.800e-10491.22light harvesting complex protein [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02630NO12G02630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02630.1NO12G02630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02630.1.cds1NO12G02630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02630.1.cds2NO12G02630.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02630.1.cds3NO12G02630.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02630.1 ID=NO12G02630.1|Name=NO12G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=804bp
ATGAAGTGCGCGATGGTTGTCCTCGGCAGCTTGGCCATGGCCTCTGCCTT
TGTCCCTGCCGCCCCTAAGATGTCTCGCACTCGTGGCGTGGCCCGCATGG
CCGTGAACGAGATCCTGGGCGCGGACGTAGAGACGGGTGGCGTCTGGGAC
CCCCTGAATTTCTCCAAGGATGAAGGAAGCCTCTACCGTTACAGGGCAGT
CGAGCTCAAGCACGGCCGATTGGCCATGCTCGCAGTTTTGGGCCTGTGGT
TCTCTGAGTTCTACCACCCTCTGTACGATGGTAAGATCAGCCCTGGCCTC
AAGGCCATCGGTGAGCTCCCTGGCGCCGCTTGGCTGCAGATCCTGGCCGC
CATTGCGGTGGTTGAGTTGACGATCGGCAAGCAAGACACGGAGAACAAGG
CCCCCGGCGACCTCGGGTTCGGTTTGAACTTCAACCCCTTCAAGAATGAC
CCGGAGAAATTCGCGGAGCTGCAGCTGAAGGAGCTCAAAAATGGTCGCTT
GGCGATGCTTGGTGCCGCCGGCATCCTCCTGCAGGAGGGCCTCACTGGGC
AGACGTGCTTTGAGCAAATTGCTGCCCAGCACTTGAGCCCCTTTGGGGAT
GGACAGGGCTTCTTCTAAGTACGTACATTGAATGTCTTGGAGGAGTTTGG
AGATTTGATTGTTGGGAAGCTGCCGCGTTTTTGGTTTTGTTTGAAGCGTC
GCCCCCTCCGTCTTCTTCTGGATTACTCTACCCTACCCTCACCCTCACCT
TACCGTCTTGCGTCTTTTTCCACCCACACAGAAATCGGTCGTTGTTATCC
ACGT
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protein sequence of NO12G02630.1

>NO12G02630.1-protein ID=NO12G02630.1-protein|Name=NO12G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MKCAMVVLGSLAMASAFVPAAPKMSRTRGVARMAVNEILGADVETGGVWD
PLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWFSEFYHPLYDGKISPGL
KAIGELPGAAWLQILAAIAVVELTIGKQDTENKAPGDLGFGLNFNPFKND
PEKFAELQLKELKNGRLAMLGAAGILLQEGLTGQTCFEQIAAQHLSPFGD
GQGFF*
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mRNA from alignment at chr12:743865..745302-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02630.1 ID=NO12G02630.1|Name=NO12G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1438bp|location=Sequence derived from alignment at chr12:743865..745302- (Nannochloropsis oceanica)
ATGAAGTGCGCGATGGTTGTCCTCGGCAGCTTGGCCATGGCCTCTGCCTT
TGTCCCTGCCGCCCCTAAGATGTCTCGCAGTAAGTACACAACGAGTGCTG
GGTGGTCTCGGACACGGGGGGGGGTAGAGAGGGGGCTTGACGCGCTAAGG
GAGGCGCAAGAAAAAGGCGGATCGACACGCACAGGCTTGGAAGGCACGCC
CATCTTTTTTGTCGGTAGCGGCATTTCATAGACGCTTTAGTATGTGTGGT
TTGTACGTCCTACGTGGGGTGGATACTGTCGGCATATGGCGGTAGGATTT
GCCTGAACCAGAGCCATACCAGAAGACGATAATCCCGTTTGGGTTATTAT
TATGGTATAATGCGTGTAAGCACTTTGTCCAGAGTGTTTAGTAAGCTTAA
TTGACCTGGGTACTGCAGTCGGTAATCCTGGGTACTGCAGTCGGTAATCC
CTTCATTTTGCTCACTCGTCGGACCTCCATTTTTCTTCTTTCAACCACCC
AAAACAGCTCGTGGCGTGGCCCGCATGGCCGTGAACGAGATCCTGGGCGC
GGACGTAGAGACGGGTGGCGTCTGGGACCCCCTGAATTTCTCCAAGGATG
AAGGAAGCCTCTACCGTTACAGGGCAGTCGGTGCGTTTACCCGTCTATCT
TCCCATCCCTCCCTCCCTCCCTGCCGCTCTTTCTCTCAATCACACACAAT
CCTTCTCTCCTCAATGGACGCGATGACTTCGTCTGCTGGATGCCCTTTTG
TGCCAGCGCCTTGTTATCCTACGAATCAAGATGTATGCACCCACGCATCA
TCGCCCTCCCTCCCTCCCTTCAACCCACCCCTCCAGAGCTCAAGCACGGC
CGATTGGCCATGCTCGCAGTTTTGGGCCTGTGGTTCTCTGAGTTCTACCA
CCCTCTGTACGATGGTAAGATCAGCCCTGGCCTCAAGGCCATCGGTGAGC
TCCCTGGCGCCGCTTGGCTGCAGATCCTGGCCGCCATTGCGGTGGTTGAG
TTGACGATCGGCAAGCAAGACACGGAGAACAAGGCCCCCGGCGACCTCGG
GTTCGGTTTGAACTTCAACCCCTTCAAGAATGACCCGGAGAAATTCGCGG
AGCTGCAGCTGAAGGAGCTCAAAAATGGTCGCTTGGCGATGCTTGGTGCC
GCCGGCATCCTCCTGCAGGAGGGCCTCACTGGGCAGACGTGCTTTGAGCA
AATTGCTGCCCAGCACTTGAGCCCCTTTGGGGATGGACAGGGCTTCTTCT
AAGTACGTACATTGAATGTCTTGGAGGAGTTTGGAGATTTGATTGTTGGG
AAGCTGCCGCGTTTTTGGTTTTGTTTGAAGCGTCGCCCCCTCCGTCTTCT
TCTGGATTACTCTACCCTACCCTCACCCTCACCTTACCGTCTTGCGTCTT
TTTCCACCCACACAGAAATCGGTCGTTGTTATCCACGT
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Coding sequence (CDS) from alignment at chr12:743865..745302-

>NO12G02630.1 ID=NO12G02630.1|Name=NO12G02630.1|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at chr12:743865..745302- (Nannochloropsis oceanica)
ATGAAGTGCGCGATGGTTGTCCTCGGCAGCTTGGCCATGGCCTCTGCCTT
TGTCCCTGCCGCCCCTAAGATGTCTCGCACTCGTGGCGTGGCCCGCATGG
CCGTGAACGAGATCCTGGGCGCGGACGTAGAGACGGGTGGCGTCTGGGAC
CCCCTGAATTTCTCCAAGGATGAAGGAAGCCTCTACCGTTACAGGGCAGT
CGAGCTCAAGCACGGCCGATTGGCCATGCTCGCAGTTTTGGGCCTGTGGT
TCTCTGAGTTCTACCACCCTCTGTACGATGGTAAGATCAGCCCTGGCCTC
AAGGCCATCGGTGAGCTCCCTGGCGCCGCTTGGCTGCAGATCCTGGCCGC
CATTGCGGTGGTTGAGTTGACGATCGGCAAGCAAGACACGGAGAACAAGG
CCCCCGGCGACCTCGGGTTCGGTTTGAACTTCAACCCCTTCAAGAATGAC
CCGGAGAAATTCGCGGAGCTGCAGCTGAAGGAGCTCAAAAATGGTCGCTT
GGCGATGCTTGGTGCCGCCGGCATCCTCCTGCAGGAGGGCCTCACTGGGC
AGACGTGCTTTGAGCAAATTGCTGCCCAGCACTTGAGCCCCTTTGGGGAT
GGACAGGGCTTCTTCTAA
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Synonyms
Publications