NO12G02080, NO12G02080 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G02080 vs. NCBI_GenBank
Match: XP_005856335.1 (hypothetical protein NGA_2014700 [Nannochloropsis gaditana CCMP526] >EKU20017.1 hypothetical protein NGA_2014700 [Nannochloropsis gaditana CCMP526] >EWM25810.1 hypothetical protein Naga_100021g35 [Nannochloropsis gaditana]) HSP 1 Score: 144.4 bits (363), Expect = 4.400e-31 Identity = 86/192 (44.79%), Postives = 116/192 (60.42%), Query Frame = 0 Query: 45 SVVSVMLANDIQSFRNTFRAFFFPGIAILTFGMPLVIAGLIVASPLTEKTTPTTVTPR--------XXXXXXXXXXXXXXXXXXXXXXXDLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLLEIFFGKAELVEEAQPQQRQG-GRRIDISDVVDIEATVTKD 228 SV + LA D+QSFR+ FR FFPG+ IL+ G+P ++ G++V P + + T + + DLIGDGSL+VPGLG SDF+WAPVSA +VRLLYG+NVLAA+NL+EELLP TD+IPTATIAFLL+ F+ + E AQ ++G R +DV+D + T +D Sbjct: 45 SVGKMKLAADMQSFRDGFRTLFFPGVGILSLGLPFLLVGVLVGKPSSGEAKDTNLKTKRSSLLIASNPLFQEYRFSKALVIKLMASIILDLIGDGSLLVPGLGEVSDFLWAPVSAAVVRLLYGNNVLAAVNLLEELLPSTDIIPTATIAFLLDFFWHE----EGAQSPSKEGRARPATPADVIDAKVTSIRD 232
BLAST of NO12G02080 vs. NCBI_GenBank
Match: CEL99945.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 79.7 bits (195), Expect = 1.300e-11 Identity = 39/74 (52.70%), Postives = 55/74 (74.32%), Query Frame = 0 Query: 126 DLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLLEIFFGKAELVE 200 DL GD S +P +G D ++AP++ALL+R LYGS+ +A + L EE+LPFTD+IPTATIA+LL+ F+ A + E Sbjct: 324 DLAGDFSFGLPLVGEVGDLLFAPIAALLLRSLYGSSFIAGLELAEEVLPFTDIIPTATIAWLLQTFYSDATITE 397
BLAST of NO12G02080 vs. NCBI_GenBank
Match: XP_002500436.1 (predicted protein [Micromonas commoda] >ACO61694.1 predicted protein [Micromonas commoda]) HSP 1 Score: 74.3 bits (181), Expect = 5.600e-10 Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 0 Query: 126 DLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLLEIFF 193 D +GD S ++PGLG +D +AP+ A L+ L+ SNV++ + VEE LPFTDVIPTAT+A++ E FF Sbjct: 153 DALGDSSFLLPGLGEGTDIAYAPLEAFLLSQLFRSNVVSGVGFVEEALPFTDVIPTATLAWMTETFF 219
BLAST of NO12G02080 vs. NCBI_GenBank
Match: XP_005760304.1 (hypothetical protein EMIHUDRAFT_317180 [Emiliania huxleyi CCMP1516] >XP_005769300.1 hypothetical protein EMIHUDRAFT_356053, partial [Emiliania huxleyi CCMP1516] >EOD07875.1 hypothetical protein EMIHUDRAFT_317180 [Emiliania huxleyi CCMP1516] >EOD16871.1 hypothetical protein EMIHUDRAFT_356053, partial [Emiliania huxleyi CCMP1516]) HSP 1 Score: 72.4 bits (176), Expect = 2.100e-9 Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 0 Query: 126 DLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLLE-IFFGKAELVEEAQPQQRQ-----GGRRIDISDVVDI 221 DL+G S VP G +D WAPVSALLV LYG+++L + EE+LP DV+PTATI +LLE G++ A P + G R D +DV+D+ Sbjct: 90 DLVGVASYAVPLAGEGADLAWAPVSALLVNYLYGNSILTGLAFAEEVLPGLDVVPTATIGWLLENTELGRSVNEASAPPPKADAPSSAGKSRGDDADVIDV 190
BLAST of NO12G02080 vs. NCBI_GenBank
Match: XP_002181729.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46943.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 70.9 bits (172), Expect = 6.100e-9 Identity = 39/111 (35.14%), Postives = 64/111 (57.66%), Query Frame = 0 Query: 126 DLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLLEIFFGKAELVE------EAQPQQRQGGRRIDISDVVDIEATVTKDDEK 231 D++G S ++P +G SD ++AP++ALL+R LY SNV+ A+ VEE+LPFTD++P ATI + ++ F +++ + Q R D D +D+ V +K Sbjct: 853 DIVGSSSELLPIIGELSDVVYAPIAALLLRKLYNSNVIFALEFVEEILPFTDILPLATICWTVDTFAPDSDVAKFLNVGNYGNSQARASTSFDDGMDAIDVNGEVKSPAKK 963
BLAST of NO12G02080 vs. NCBI_GenBank
Match: XP_005651106.1 (hypothetical protein COCSUDRAFT_52381 [Coccomyxa subellipsoidea C-169] >EIE26562.1 hypothetical protein COCSUDRAFT_52381 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 70.5 bits (171), Expect = 8.000e-9 Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = 0 Query: 126 DLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLLEIFFGKAELVEEAQ 203 D +G S +VPG G SD WAPV A +V LY + +L ++ +EE+LPFTD++P+ATI +L+E +EA+ Sbjct: 23 DFVGMSSYIVPGAGNISDIGWAPVQAFIVHHLYNNRLLTTLSFIEEVLPFTDIVPSATIGWLMEYTRAGKRAQDEAE 99
BLAST of NO12G02080 vs. NCBI_GenBank
Match: PRP88052.1 (hypothetical protein PROFUN_04480 [Planoprotostelium fungivorum]) HSP 1 Score: 69.3 bits (168), Expect = 1.800e-8 Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0 Query: 126 DLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAF 187 DL+G + ++PGLG D +WAP SA LV LYGS ++A N EE+LPFTD IPTATIA+ Sbjct: 150 DLLGLLTFLIPGLGETIDVVWAPASAALVYWLYGSPLVAFANFAEEILPFTDFIPTATIAW 210
BLAST of NO12G02080 vs. NCBI_GenBank
Match: GBG34698.1 (Hypothetical Protein FCC1311_109202 [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 69.3 bits (168), Expect = 1.800e-8 Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 0 Query: 126 DLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLL 189 D+ G S VPGLG +DF WAP+ LV +YG L+ I+ EELLPFTDV+P+ATI FLL Sbjct: 565 DIGGASSYAVPGLGELTDFAWAPIQTYLVHQMYGVTWLSWISFAEELLPFTDVLPSATIGFLL 627
BLAST of NO12G02080 vs. NCBI_GenBank
Match: CBJ31625.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 68.2 bits (165), Expect = 4.000e-8 Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 0 Query: 126 DLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLL 189 DLIG S +PG+G A+D WAP+S+ L+ LYG+++ A + VEE+LP DVIPTATIA+ L Sbjct: 38 DLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFL 100
BLAST of NO12G02080 vs. NCBI_GenBank
Match: WP_011170502.1 (hypothetical protein [Methanococcus maripaludis] >CAF30114.1 hypothetical protein MMP0558 [Methanococcus maripaludis S2]) HSP 1 Score: 68.2 bits (165), Expect = 4.000e-8 Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = 0 Query: 126 DLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLLEIF 192 D++G + ++PGLG + DF+WAP+ AL++R LY S++L EELL TD+IP+ATI ++LE F Sbjct: 20 DIVGMATYLIPGLGESGDFVWAPIYALIIRNLYHSSILGFFGGFEELLMGTDIIPSATILWVLETF 85 The following BLAST results are available for this feature:
BLAST of NO12G02080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G02080 ID=NO12G02080|Name=NO12G02080|organism=Nannochloropsis oceanica|type=gene|length=708bpback to top protein sequence of NO12G02080.1 >NO12G02080.1-protein ID=NO12G02080.1-protein|Name=NO12G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=236bpback to top Synonyms
Publications
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