NO12G02080, NO12G02080 (gene) Nannochloropsis oceanica

Overview
NameNO12G02080
Unique NameNO12G02080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length708
Alignment locationchr12:589669..590376 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:589669..590376 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO12G02080 vs. NCBI_GenBank
Match: XP_005856335.1 (hypothetical protein NGA_2014700 [Nannochloropsis gaditana CCMP526] >EKU20017.1 hypothetical protein NGA_2014700 [Nannochloropsis gaditana CCMP526] >EWM25810.1 hypothetical protein Naga_100021g35 [Nannochloropsis gaditana])

HSP 1 Score: 144.4 bits (363), Expect = 4.400e-31
Identity = 86/192 (44.79%), Postives = 116/192 (60.42%), Query Frame = 0
Query:   45 SVVSVMLANDIQSFRNTFRAFFFPGIAILTFGMPLVIAGLIVASPLTEKTTPTTVTPR--------XXXXXXXXXXXXXXXXXXXXXXXDLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLLEIFFGKAELVEEAQPQQRQG-GRRIDISDVVDIEATVTKD 228
            SV  + LA D+QSFR+ FR  FFPG+ IL+ G+P ++ G++V  P + +   T +  +                               DLIGDGSL+VPGLG  SDF+WAPVSA +VRLLYG+NVLAA+NL+EELLP TD+IPTATIAFLL+ F+ +    E AQ   ++G  R    +DV+D + T  +D
Sbjct:   45 SVGKMKLAADMQSFRDGFRTLFFPGVGILSLGLPFLLVGVLVGKPSSGEAKDTNLKTKRSSLLIASNPLFQEYRFSKALVIKLMASIILDLIGDGSLLVPGLGEVSDFLWAPVSAAVVRLLYGNNVLAAVNLLEELLPSTDIIPTATIAFLLDFFWHE----EGAQSPSKEGRARPATPADVIDAKVTSIRD 232          
BLAST of NO12G02080 vs. NCBI_GenBank
Match: CEL99945.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 79.7 bits (195), Expect = 1.300e-11
Identity = 39/74 (52.70%), Postives = 55/74 (74.32%), Query Frame = 0
Query:  126 DLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLLEIFFGKAELVE 200
            DL GD S  +P +G   D ++AP++ALL+R LYGS+ +A + L EE+LPFTD+IPTATIA+LL+ F+  A + E
Sbjct:  324 DLAGDFSFGLPLVGEVGDLLFAPIAALLLRSLYGSSFIAGLELAEEVLPFTDIIPTATIAWLLQTFYSDATITE 397          
BLAST of NO12G02080 vs. NCBI_GenBank
Match: XP_002500436.1 (predicted protein [Micromonas commoda] >ACO61694.1 predicted protein [Micromonas commoda])

HSP 1 Score: 74.3 bits (181), Expect = 5.600e-10
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 0
Query:  126 DLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLLEIFF 193
            D +GD S ++PGLG  +D  +AP+ A L+  L+ SNV++ +  VEE LPFTDVIPTAT+A++ E FF
Sbjct:  153 DALGDSSFLLPGLGEGTDIAYAPLEAFLLSQLFRSNVVSGVGFVEEALPFTDVIPTATLAWMTETFF 219          
BLAST of NO12G02080 vs. NCBI_GenBank
Match: XP_005760304.1 (hypothetical protein EMIHUDRAFT_317180 [Emiliania huxleyi CCMP1516] >XP_005769300.1 hypothetical protein EMIHUDRAFT_356053, partial [Emiliania huxleyi CCMP1516] >EOD07875.1 hypothetical protein EMIHUDRAFT_317180 [Emiliania huxleyi CCMP1516] >EOD16871.1 hypothetical protein EMIHUDRAFT_356053, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 72.4 bits (176), Expect = 2.100e-9
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 0
Query:  126 DLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLLE-IFFGKAELVEEAQPQQRQ-----GGRRIDISDVVDI 221
            DL+G  S  VP  G  +D  WAPVSALLV  LYG+++L  +   EE+LP  DV+PTATI +LLE    G++     A P +       G  R D +DV+D+
Sbjct:   90 DLVGVASYAVPLAGEGADLAWAPVSALLVNYLYGNSILTGLAFAEEVLPGLDVVPTATIGWLLENTELGRSVNEASAPPPKADAPSSAGKSRGDDADVIDV 190          
BLAST of NO12G02080 vs. NCBI_GenBank
Match: XP_002181729.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46943.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 70.9 bits (172), Expect = 6.100e-9
Identity = 39/111 (35.14%), Postives = 64/111 (57.66%), Query Frame = 0
Query:  126 DLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLLEIFFGKAELVE------EAQPQQRQGGRRIDISDVVDIEATVTKDDEK 231
            D++G  S ++P +G  SD ++AP++ALL+R LY SNV+ A+  VEE+LPFTD++P ATI + ++ F   +++ +          Q R      D  D +D+   V    +K
Sbjct:  853 DIVGSSSELLPIIGELSDVVYAPIAALLLRKLYNSNVIFALEFVEEILPFTDILPLATICWTVDTFAPDSDVAKFLNVGNYGNSQARASTSFDDGMDAIDVNGEVKSPAKK 963          
BLAST of NO12G02080 vs. NCBI_GenBank
Match: XP_005651106.1 (hypothetical protein COCSUDRAFT_52381 [Coccomyxa subellipsoidea C-169] >EIE26562.1 hypothetical protein COCSUDRAFT_52381 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 70.5 bits (171), Expect = 8.000e-9
Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = 0
Query:  126 DLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLLEIFFGKAELVEEAQ 203
            D +G  S +VPG G  SD  WAPV A +V  LY + +L  ++ +EE+LPFTD++P+ATI +L+E         +EA+
Sbjct:   23 DFVGMSSYIVPGAGNISDIGWAPVQAFIVHHLYNNRLLTTLSFIEEVLPFTDIVPSATIGWLMEYTRAGKRAQDEAE 99          
BLAST of NO12G02080 vs. NCBI_GenBank
Match: PRP88052.1 (hypothetical protein PROFUN_04480 [Planoprotostelium fungivorum])

HSP 1 Score: 69.3 bits (168), Expect = 1.800e-8
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0
Query:  126 DLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAF 187
            DL+G  + ++PGLG   D +WAP SA LV  LYGS ++A  N  EE+LPFTD IPTATIA+
Sbjct:  150 DLLGLLTFLIPGLGETIDVVWAPASAALVYWLYGSPLVAFANFAEEILPFTDFIPTATIAW 210          
BLAST of NO12G02080 vs. NCBI_GenBank
Match: GBG34698.1 (Hypothetical Protein FCC1311_109202 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 69.3 bits (168), Expect = 1.800e-8
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 0
Query:  126 DLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLL 189
            D+ G  S  VPGLG  +DF WAP+   LV  +YG   L+ I+  EELLPFTDV+P+ATI FLL
Sbjct:  565 DIGGASSYAVPGLGELTDFAWAPIQTYLVHQMYGVTWLSWISFAEELLPFTDVLPSATIGFLL 627          
BLAST of NO12G02080 vs. NCBI_GenBank
Match: CBJ31625.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 68.2 bits (165), Expect = 4.000e-8
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 0
Query:  126 DLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLL 189
            DLIG  S  +PG+G A+D  WAP+S+ L+  LYG+++ A +  VEE+LP  DVIPTATIA+ L
Sbjct:   38 DLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFL 100          
BLAST of NO12G02080 vs. NCBI_GenBank
Match: WP_011170502.1 (hypothetical protein [Methanococcus maripaludis] >CAF30114.1 hypothetical protein MMP0558 [Methanococcus maripaludis S2])

HSP 1 Score: 68.2 bits (165), Expect = 4.000e-8
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = 0
Query:  126 DLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLLEIF 192
            D++G  + ++PGLG + DF+WAP+ AL++R LY S++L      EELL  TD+IP+ATI ++LE F
Sbjct:   20 DIVGMATYLIPGLGESGDFVWAPIYALIIRNLYHSSILGFFGGFEELLMGTDIIPSATILWVLETF 85          
The following BLAST results are available for this feature:
BLAST of NO12G02080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856335.14.400e-3144.79hypothetical protein NGA_2014700 [Nannochloropsis ... [more]
CEL99945.11.300e-1152.70unnamed protein product [Vitrella brassicaformis C... [more]
XP_002500436.15.600e-1052.24predicted protein [Micromonas commoda] >ACO61694.1... [more]
XP_005760304.12.100e-943.56hypothetical protein EMIHUDRAFT_317180 [Emiliania ... [more]
XP_002181729.16.100e-935.14predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_005651106.18.000e-942.86hypothetical protein COCSUDRAFT_52381 [Coccomyxa s... [more]
PRP88052.11.800e-857.38hypothetical protein PROFUN_04480 [Planoprotosteli... [more]
GBG34698.11.800e-855.56Hypothetical Protein FCC1311_109202 [Aurantiochytr... [more]
CBJ31625.14.000e-853.97conserved unknown protein [Ectocarpus siliculosus][more]
WP_011170502.14.000e-848.48hypothetical protein [Methanococcus maripaludis] >... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL126nonsL126Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR008ngnoR008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010142NSK010142Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02080.1NO12G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592279gene_5368Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100021g35gene4696Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02080.1NO12G02080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02080 ID=NO12G02080|Name=NO12G02080|organism=Nannochloropsis oceanica|type=gene|length=708bp
ATGGTCCTGGCTCGACAAAGTCCGCGTCTCATCAGCAGTCTCCCCAACTT
CATTCACCCCCCTCCCCCGGTCTACTACGCCTCGAGACGGAGTCCAACCT
CATATAGCGCCGTATGCGCCACTTCTGAAACGTCCGTGGTGTCCGTAATG
CTTGCGAATGACATACAGTCCTTTCGTAACACATTTCGTGCCTTTTTTTT
CCCTGGCATTGCCATTCTGACATTTGGCATGCCGCTGGTAATCGCCGGTC
TCATTGTCGCAAGTCCACTCACCGAGAAGACGACACCAACTACTGTAACT
CCGCGCTTTACACCTAACAAATTACCTTCACTCAGAGCTGTTTTGTTGAG
TAAGCTGCTCGTCAGTATTCTCATTGACTTGATCGGGGACGGGTCCCTTG
TTGTGCCGGGGCTTGGAGGTGCGAGTGACTTCATCTGGGCACCCGTTAGT
GCCCTGTTGGTGCGGCTCTTATATGGGAGTAACGTCCTGGCTGCCATTAA
CCTTGTGGAGGAATTGCTTCCGTTTACAGATGTGATTCCAACGGCCACCA
TTGCTTTTCTCCTGGAAATTTTCTTCGGCAAGGCCGAATTAGTGGAAGAG
GCACAACCGCAACAGAGGCAAGGTGGGAGGAGGATAGATATCTCTGATGT
GGTGGACATAGAAGCAACAGTTACTAAAGATGACGAGAAAAAGAGGAAAA
GAGACTGA
back to top

protein sequence of NO12G02080.1

>NO12G02080.1-protein ID=NO12G02080.1-protein|Name=NO12G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MVLARQSPRLISSLPNFIHPPPPVYYASRRSPTSYSAVCATSETSVVSVM
LANDIQSFRNTFRAFFFPGIAILTFGMPLVIAGLIVASPLTEKTTPTTVT
PRFTPNKLPSLRAVLLSKLLVSILIDLIGDGSLVVPGLGGASDFIWAPVS
ALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLLEIFFGKAELVEE
AQPQQRQGGRRIDISDVVDIEATVTKDDEKKRKRD*
back to top
Synonyms
Publications