NO12G02080.1, NO12G02080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02080.1
Unique NameNO12G02080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length708
Alignment locationchr12:589669..590376 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:589669..590376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02080.1 vs.
Match: XP_005856335.1 (hypothetical protein NGA_2014700 [Nannochloropsis gaditana CCMP526]; EKU20017.1 hypothetical protein NGA_2014700 [Nannochloropsis gaditana CCMP526]; EWM25810.1 hypothetical protein Naga_100021g35 [Nannochloropsis gaditana])

HSP 1 Score: 157.9 bits (398), Expect = 3.800e-35
Identity = 92/192 (47.92%), Postives = 128/192 (66.67%), Query Frame = 0 
Query:   45 SVVSVMLANDIQSFRNTFRAFFFPGIAILTFGMPLVIAGLIVASPLTEKTTPTTVTPRFTPNKLPS--------LRAVLLSKLLVSILIDLIGDGSLVVPGLGGASDFIWAPVSALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLLEIFFGKAELVEEAQPQQRQG-GRRIDISDVVDIEATVTKD 228
            SV  + LA D+QSFR+ FR  FFPG+ IL+ G+P ++ G++V  P + +   T +  + +   + S            L+ KL+ SI++DLIGDGSL+VPGLG  SDF+WAPVSA +VRLLYG+NVLAA+NL+EELLP TD+IPTATIAFLL+ F+ +    E AQ   ++G  R    +DV+D + T  +D
Sbjct:   45 SVGKMKLAADMQSFRDGFRTLFFPGVGILSLGLPFLLVGVLVGKPSSGEAKDTNLKTKRSSLLIASNPLFQEYRFSKALVIKLMASIILDLIGDGSLLVPGLGEVSDFLWAPVSAAVVRLLYGNNVLAAVNLLEELLPSTDIIPTATIAFLLDFFWHE----EGAQSPSKEGRARPATPADVIDAKVTSIRD 232
The following BLAST results are available for this feature:
BLAST of NO12G02080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856335.13.800e-3547.92hypothetical protein NGA_2014700 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02080NO12G02080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02080.1NO12G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02080.1.cds1NO12G02080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02080.1 ID=NO12G02080.1|Name=NO12G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=708bp
ATGGTCCTGGCTCGACAAAGTCCGCGTCTCATCAGCAGTCTCCCCAACTT
CATTCACCCCCCTCCCCCGGTCTACTACGCCTCGAGACGGAGTCCAACCT
CATATAGCGCCGTATGCGCCACTTCTGAAACGTCCGTGGTGTCCGTAATG
CTTGCGAATGACATACAGTCCTTTCGTAACACATTTCGTGCCTTTTTTTT
CCCTGGCATTGCCATTCTGACATTTGGCATGCCGCTGGTAATCGCCGGTC
TCATTGTCGCAAGTCCACTCACCGAGAAGACGACACCAACTACTGTAACT
CCGCGCTTTACACCTAACAAATTACCTTCACTCAGAGCTGTTTTGTTGAG
TAAGCTGCTCGTCAGTATTCTCATTGACTTGATCGGGGACGGGTCCCTTG
TTGTGCCGGGGCTTGGAGGTGCGAGTGACTTCATCTGGGCACCCGTTAGT
GCCCTGTTGGTGCGGCTCTTATATGGGAGTAACGTCCTGGCTGCCATTAA
CCTTGTGGAGGAATTGCTTCCGTTTACAGATGTGATTCCAACGGCCACCA
TTGCTTTTCTCCTGGAAATTTTCTTCGGCAAGGCCGAATTAGTGGAAGAG
GCACAACCGCAACAGAGGCAAGGTGGGAGGAGGATAGATATCTCTGATGT
GGTGGACATAGAAGCAACAGTTACTAAAGATGACGAGAAAAAGAGGAAAA
GAGACTGA
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protein sequence of NO12G02080.1

>NO12G02080.1-protein ID=NO12G02080.1-protein|Name=NO12G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MVLARQSPRLISSLPNFIHPPPPVYYASRRSPTSYSAVCATSETSVVSVM
LANDIQSFRNTFRAFFFPGIAILTFGMPLVIAGLIVASPLTEKTTPTTVT
PRFTPNKLPSLRAVLLSKLLVSILIDLIGDGSLVVPGLGGASDFIWAPVS
ALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLLEIFFGKAELVEE
AQPQQRQGGRRIDISDVVDIEATVTKDDEKKRKRD*
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mRNA from alignment at chr12:589669..590376+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02080.1 ID=NO12G02080.1|Name=NO12G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=708bp|location=Sequence derived from alignment at chr12:589669..590376+ (Nannochloropsis oceanica)
ATGGTCCTGGCTCGACAAAGTCCGCGTCTCATCAGCAGTCTCCCCAACTT
CATTCACCCCCCTCCCCCGGTCTACTACGCCTCGAGACGGAGTCCAACCT
CATATAGCGCCGTATGCGCCACTTCTGAAACGTCCGTGGTGTCCGTAATG
CTTGCGAATGACATACAGTCCTTTCGTAACACATTTCGTGCCTTTTTTTT
CCCTGGCATTGCCATTCTGACATTTGGCATGCCGCTGGTAATCGCCGGTC
TCATTGTCGCAAGTCCACTCACCGAGAAGACGACACCAACTACTGTAACT
CCGCGCTTTACACCTAACAAATTACCTTCACTCAGAGCTGTTTTGTTGAG
TAAGCTGCTCGTCAGTATTCTCATTGACTTGATCGGGGACGGGTCCCTTG
TTGTGCCGGGGCTTGGAGGTGCGAGTGACTTCATCTGGGCACCCGTTAGT
GCCCTGTTGGTGCGGCTCTTATATGGGAGTAACGTCCTGGCTGCCATTAA
CCTTGTGGAGGAATTGCTTCCGTTTACAGATGTGATTCCAACGGCCACCA
TTGCTTTTCTCCTGGAAATTTTCTTCGGCAAGGCCGAATTAGTGGAAGAG
GCACAACCGCAACAGAGGCAAGGTGGGAGGAGGATAGATATCTCTGATGT
GGTGGACATAGAAGCAACAGTTACTAAAGATGACGAGAAAAAGAGGAAAA
GAGACTGA
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Coding sequence (CDS) from alignment at chr12:589669..590376+

>NO12G02080.1 ID=NO12G02080.1|Name=NO12G02080.1|organism=Nannochloropsis oceanica|type=CDS|length=708bp|location=Sequence derived from alignment at chr12:589669..590376+ (Nannochloropsis oceanica)
ATGGTCCTGGCTCGACAAAGTCCGCGTCTCATCAGCAGTCTCCCCAACTT
CATTCACCCCCCTCCCCCGGTCTACTACGCCTCGAGACGGAGTCCAACCT
CATATAGCGCCGTATGCGCCACTTCTGAAACGTCCGTGGTGTCCGTAATG
CTTGCGAATGACATACAGTCCTTTCGTAACACATTTCGTGCCTTTTTTTT
CCCTGGCATTGCCATTCTGACATTTGGCATGCCGCTGGTAATCGCCGGTC
TCATTGTCGCAAGTCCACTCACCGAGAAGACGACACCAACTACTGTAACT
CCGCGCTTTACACCTAACAAATTACCTTCACTCAGAGCTGTTTTGTTGAG
TAAGCTGCTCGTCAGTATTCTCATTGACTTGATCGGGGACGGGTCCCTTG
TTGTGCCGGGGCTTGGAGGTGCGAGTGACTTCATCTGGGCACCCGTTAGT
GCCCTGTTGGTGCGGCTCTTATATGGGAGTAACGTCCTGGCTGCCATTAA
CCTTGTGGAGGAATTGCTTCCGTTTACAGATGTGATTCCAACGGCCACCA
TTGCTTTTCTCCTGGAAATTTTCTTCGGCAAGGCCGAATTAGTGGAAGAG
GCACAACCGCAACAGAGGCAAGGTGGGAGGAGGATAGATATCTCTGATGT
GGTGGACATAGAAGCAACAGTTACTAAAGATGACGAGAAAAAGAGGAAAA
GAGACTGA
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Synonyms
Publications