NO12G01960, NO12G01960 (gene) Nannochloropsis oceanica

Overview
NameNO12G01960
Unique NameNO12G01960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2757
Alignment locationchr12:555860..558616 -

Link to JBrowse

Properties
Property NameValue
DescriptionProtein of unknown function (DUF726)
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:555860..558616 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007941DUF726
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO12G01960 vs. NCBI_GenBank
Match: GAX20178.1 (hypothetical protein FisN_12Hh023 [Fistulifera solaris])

HSP 1 Score: 155.6 bits (392), Expect = 6.800e-34
Identity = 170/638 (26.65%), Postives = 251/638 (39.34%), Query Frame = 0
Query:  199 LRYAKITAAALGGGALLAFTGGLAA----PAIGVGLSALSATGAVVAGFTTTASVATLFGASGAGLVGFKMKRRTAALSEFQFRHVERSEEEEDSD--LGRMAICICISGWLLNDESEYDTPFGVEPRNSDVAARLRL---FYSLYNPDNVKYAAILATEFKGREDDLERECLHKYGTSPFDSYDTWSAVGGGSRSTTNTNSSMSIGSSKNLYKDVSEAEKEEVFRLIASYDKDSVSRITDADARRTRFTMKKSASRSSSISGGGVMCRTTSRDEDGQLTEEVRRIVGMRLNSPPFPCLSPRPPQTAKAEMSTSQSINEEEDGEKETEESVLLLRDTSRQSRGLQERSGDCGESTQSRLNSETSEILLELVSEDSVEVVPPWWSETFPHL-----ETFTLRWESKALFNLGSSVMEIVASLGQQAALEVLTFTAAATLVSALAWPITLLQAADMIDSTWTLACEKADRAGQLLAQT--------QPVTV--------------------------------------------------ADLGSPASGLVHTVVLMGAPISCSESSWQKARGMVADRLVNCYSRKDWVLKIMYRYQKL--VTNAAGIAPVIVAGVENVDVTDVVPGHQHYATKIKDIL 763
            +R  KI  AA+  G L A +GGLAA                         +TA+V  +FG  G  L  +KM+RRT  L+EF F  V  +E   D+      +   IC+SGW L D+ ++  P+GV P N  +  RL L   FY +Y P++V     +  ++KG E +L +    KYG +P    D    +  G R            +  +L  +  E  +   F +I     D+V +   A+A                                                             TA +   TS +          +E +V    DT                                L  ED+ E VP +    + +      E +T++WES  L  L  SV ++   +      ++L  TA +TL+SA AWP  L+ AA++ID TWTLA E++D AG+ LA++        +PV +                                                  + +  PAS +V   +LMG P   S SSW+  R +VA RLVNC+S+KD +L +M++ ++   +    G+  V VAGVENVDVTD+V GHQ Y T I DIL
Sbjct:  395 MRRLKIGGAAIVAGTLFAVSGGLAAXXXXXXXXXXXXXXXXXXXXXXXXXSTAAVTAIFGVGGGSLAAYKMQRRTQGLTEFNFMKVCGNEHSNDTHGVEAELFSTICLSGW-LRDKFDFQRPWGVNPTNPPLRDRLELLQRFYQIYRPNHVLKCEKILEQWKGEESELWKLLEQKYGRNP----DNLFPLVDGPR------------TKADLTLEQREIVEHLFFEIIHGSPSDTVKQNHPAEA-------------------------------------------------------------TASSTDCTSVTTRTNSSFNSWSETNVSGRNDT-------------------------------RLRPEDNSEAVPAYIRNIWDYKANYGGELYTVKWESSLLQELCDSVTDLAFDVVSGGTAQLLKHTALSTLLSAFAWPWALVNAANLIDGTWTLAAERSDEAGKELARSLLFSGAGNRPVVLIGYSFGARVVYACLKELARYQEAWEDYQEQLTQKKQGRFRNPSQKKDEMFSKMREPAS-IVEDAILMGLPNHLSLSSWKACRQVVAGRLVNCFSQKDLILSLMFQLKRFGGLKPVCGVCAVKVAGVENVDVTDLVLGHQDYTTCIGDIL 922          
BLAST of NO12G01960 vs. NCBI_GenBank
Match: XP_009526727.1 (hypothetical protein PHYSODRAFT_503375 [Phytophthora sojae] >EGZ17669.1 hypothetical protein PHYSODRAFT_503375 [Phytophthora sojae])

HSP 1 Score: 152.5 bits (384), Expect = 5.800e-33
Identity = 164/603 (27.20%), Postives = 227/603 (37.65%), Query Frame = 0
Query:  200 RYAKITAAALGGGALLAFTGGLAAPAIGVGL----SALSATGAVVAGFTTTASVATLFGASGAGLVGFKMKRRTAALSEFQFRHVERSEEEEDSDLGRMAICICISGWLLNDESEYDTPF-GVEPRNSDVAARLRLFYSLYNPDNVKYAAILATEFKGREDDLERECLHKYGTSPFDSYDTWSAVGGGSRSTTNTNSSMSIGSSKNLYKDVSEAEKEEVFRLIASYDKDSVSRITDADARRTRFTMKKSASRSSSISGGGVMCRTTSRDEDGQLTEEVRRIVGMRLNSPPFPCLSPRPPQTAKAEMSTSQSINEEEDGEKETEESVLLLRDTSRQSRGLQERSGDCGESTQSRLNSETSEILLELVSEDSVEVVPPW-WSETFPHLETFTLRWESKALFNLGSSVMEIVA-SLGQQAALEVLTFTAAATLVSALAWPITLLQAADMIDSTWTLACEKADRAGQLLAQT--------QPVTVADLG-------------------SPASGLVHTVVLMGAPISCSESSWQKARGMVADRLVNCYSRKDWVLKIMYRYQKLVTNAAGIAPVIVAGVENVDVTDVVPGHQHYATKIKDILLLVGLD 769
            R A I AAA+ GGALLA TGGLAAPAI   L                              GAG++G K   RT  + +F F  V   +         M + IC+SGWL +D    D P  G      D    LR FY   NP+ V     +   +KGRED+       KYG       +    +   SR        MSI      Y D +              D +++S  T             S +R+SS SGG V                                           E+ T                                                               E +  W W + FP  + + L WE   L   G S+    A  + Q A  E++ +TA A L +A+A P  + + AD+ID+ WT+    AD +G+LLA          +PVT+   G                     A G+V   VL+G+P+  +   W  AR +V+ RL+N YS KDW+L IMYRYQ    N+AGIAP+ +AGVENVD+++++ GH  Y +KI  I+ L+ L+
Sbjct:   43 RNAAIGAAAVTGGALLAVTGGLAAPAIAASLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGVMGMKADTRTRGVHDFSFDLVSAGD--------GMNVYICVSGWLDDD----DPPVRGFRRAWGDSREYLRAFYRQRNPEKVDQVDQVMDRYKGREDEFFGILRRKYGIEAGSPDNDPLGIADLSR--------MSIADQDARYSDFTSLNS----------DSNAISSTT-------------STARTSSGSGGSVW------------------------------------------ELGTKH-------------------------------------------------------------EPLRAWRWKDRFPQGDQYCLAWEEAGLRRFGKSMRTFAAEQVSQYATTELVKYTALAALFAAVAIPRVIFRLADIIDNAWTVTMNAADASGKLLADALRQREQGLRPVTLIGYGMGARLIFSCLKELAKSESLDEACGIVENAVLLGSPVPLARDDWTNARRVVSGRLINGYSEKDWMLGIMYRYQGWALNSAGIAPIDIAGVENVDLSEIIGGHLEYKSKIGAIMDLLQLE 499          
BLAST of NO12G01960 vs. NCBI_GenBank
Match: OAE22410.1 (hypothetical protein AXG93_2381s1060 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 151.8 bits (382), Expect = 9.900e-33
Identity = 88/226 (38.94%), Postives = 128/226 (56.64%), Query Frame = 0
Query:  572 WSETFPHLETFTLRWESKALFNLGSSVMEIVASLGQQAALEV-LTFTAAATLVSALAWPITLLQAADMIDSTWTLACEKADRAGQLLAQ--------TQPVT-----------------VADLGSPASGLVHTVVLMGAPISCSESSWQKARGMVADRLVNCYSRKDWVLKIMYRYQKLVTNAAGIAPVIVAGVENVDVTDVVPGHQHYATKIKDILLLVGLDDSF 772
            W  +   LE + LRWESK L  L +++ + +AS   +  ++     T  A LV+ALAWP+ LL A D IDS WT+A ++AD+AG++LA+         +PVT                 +A  G+ AS +V  VVL+GAP++     W+ AR +VA R +N YS  DW+L ++YR   + T  AGI  V + GVEN+DV+D++ GH  Y  K K+IL  + LD  F
Sbjct:  541 WEGSDGELERYALRWESKELIALSTAIEDWLASSAARELVKAGAMMTVLAGLVAALAWPVALLSATDWIDSRWTIAVDRADKAGKILAKCLLGGSQGNRPVTLIGFSLGARVIFSCLEYLAKKGNDAS-IVERVVLLGAPLTLDRQRWENARKVVAGRFINAYSSNDWILGVVYRSSFMTTGLAGIQKVEIPGVENIDVSDIISGHSMYLAKTKEILAALDLDSFF 765          
BLAST of NO12G01960 vs. NCBI_GenBank
Match: PTQ33034.1 (hypothetical protein MARPO_0092s0008 [Marchantia polymorpha])

HSP 1 Score: 151.8 bits (382), Expect = 9.900e-33
Identity = 88/226 (38.94%), Postives = 128/226 (56.64%), Query Frame = 0
Query:  572 WSETFPHLETFTLRWESKALFNLGSSVMEIVASLGQQAALEV-LTFTAAATLVSALAWPITLLQAADMIDSTWTLACEKADRAGQLLAQ--------TQPVT-----------------VADLGSPASGLVHTVVLMGAPISCSESSWQKARGMVADRLVNCYSRKDWVLKIMYRYQKLVTNAAGIAPVIVAGVENVDVTDVVPGHQHYATKIKDILLLVGLDDSF 772
            W  +   LE + LRWESK L  L +++ + +AS   +  ++     T  A LV+ALAWP+ LL A D IDS WT+A ++AD+AG++LA+         +PVT                 +A  G+ AS +V  VVL+GAP++     W+ AR +VA R +N YS  DW+L ++YR   + T  AGI  V + GVEN+DV+D++ GH  Y  K K+IL  + LD  F
Sbjct:  466 WEGSDGELERYALRWESKELIALSTAIEDWLASSAARELVKAGAMMTVLAGLVAALAWPVALLSATDWIDSRWTIAVDRADKAGKILAKCLLGGSQGNRPVTLIGFSLGARVIFSCLEYLAKKGNDAS-IVERVVLLGAPLTLDRQRWENARKVVAGRFINAYSSNDWILGVVYRSSFMTTGLAGIQKVEIPGVENIDVSDIISGHSMYLAKTKEILAALDLDSFF 690          
BLAST of NO12G01960 vs. NCBI_GenBank
Match: GAX93764.1 (Hypothetical protein PINS_001665 [Pythium insidiosum])

HSP 1 Score: 150.2 bits (378), Expect = 2.900e-32
Identity = 178/680 (26.18%), Postives = 252/680 (37.06%), Query Frame = 0
Query:  124 EAKQAQLRYLILRDLLVHLACLSMYDARTRRIMVRLALDAFEVEWR-----DMASIEALTASHLHEIWEASQAKDKVHTGLRYAKITAAALGGGALLAFTGGLAAPAIGVGLSALSATGA----VVAGFTTTASVATLFGASGAGLVGFKMKRRTAALSEFQFRHVERSEEEEDSDLGRMAICICISGWLLNDESEYDTPFGVEPRNSDVAARLRLFYSLYNPDNVKYAAILATEFKGREDDLERECLHKYGTSPFDSYDTWSAVGGGSRSTTNTNSSMSIGSSKNLYKDVSEAEKEEVFRLIASYDKDSVSRITDADARRTRFTMKKSASRSSSISGGGVMCRTTSRDEDGQLTEEVRRIVGMRLNSPPFPCLSPRPPQTAKAEMSTSQSINEEEDGEKETEESVLLLRDTSRQSRGLQERSGDCGESTQSRLNSETSEILLELVSEDSVEVVPPW-WSETFPHLETFTLRWESKALFNLGSSVMEIV-ASLGQQAALEVLTFTAAATLVSALAWPITLLQAADMIDSTWTLACEKADRAGQLLAQT--------QPVTVADLGSPA----------------SGLVHTVVLMGAPISCSESSWQKARGMVADRLVNCYSRKDWVLKIMYRYQKLVTNAAGIAPVIVAGVENVDVTDVVPGHQHYATKIKDILLLVGLD 769
            E ++ QL+  IL+ LL        YDAR R ++ R+ ++   + W+     +++    L A       E + AK  V    R   I AAA+ GGALLA TGGLAAPAI   L+AL   G                  LFG +GAG+VG K   RT  + +F    +   +         M + I +SGWL  D+       G      D    LR FY   NP+ V  A  +   + GRED                                                        E F ++                   R T K S S                                       F  L   P        S + S +E ++G                                                  D  E++  W W + FP  + + L WE + L   G S+       +   A  E++  TA A L +A+A P TLL+AADMID+ W L    AD +G+ LA+T        +PVT+   G  A                 G+V  VVL+G P+      W+ AR +V+ RL+N YS  DW+L +MYRYQ    N+AGI+P+ V GVENV+++ ++ GH  Y  KI  IL ++GL+
Sbjct:  146 EVQEFQLK--ILKQLLWFTVKAVGYDARARTLL-RVMVETMRLPWKVITVEEISIGRTLFAEATAMPMEKAAAKPSVWDWKRNVTIGAAAVTGGALLALTGGLAAPAIAASLTALGGAGVXXXXXXXXXXXXXXTTILFGTAGAGVVGLKTDARTRGVQQFHXDLISAGD--------GMNVYIXVSGWLDEDDPPQR---GFRRAWGDSREYLRAFYRKTNPEKVDQADQVLDRYXGRED--------------------------------------------------------EFFSIL-------------------RKTYKMSGSAE-------------------------------------FDPLEMIP-------SSLAASADENDNG-------------------------------------------------ADGQELMRAWRWKDRFPQGDQYCLAWEEELLRKFGKSMRSFAKEQVISYANNELVRLTAFAALFAAVAIPRTLLRAADMIDNIWVLMMNNADASGKXLAETLRRREQGLRPVTLIGYGMGARLIFMCLKKLAKYDDCHGIVENVVLLGTPLPVVAQDWKNARRVVSGRLINGYSEHDWMLAVMYRYQGWALNSAGISPIEVPGVENVNLSSIIKGHMEYKNKIGAILDVLGLE 643          
BLAST of NO12G01960 vs. NCBI_GenBank
Match: PON99515.1 (Alpha/Beta hydrolase fold containing protein [Trema orientalis])

HSP 1 Score: 149.1 bits (375), Expect = 6.400e-32
Identity = 92/240 (38.33%), Postives = 134/240 (55.83%), Query Frame = 0
Query:  554 EILLELVSEDSVEVVPPWWSETFPHLETFTLRWESKALFNLGSSVME-IVASLGQQAALEVLTFTAAATLVSALAWPITLLQAADMIDSTWTLACEKADRAGQLLAQ--------TQPVTVA--DLGSPA--------------SGLVHTVVLMGAPISCSESSWQKARGMVADRLVNCYSRKDWVLKIMYRYQKLVTNAAGIAPVIVAGVENVDVTDVVPGHQHYATKIKDILLLVGLD 769
            EI++     D  + V PW  ++  +LE + L+WESK L  + +++ + + + +  +   +    T  +TLV+ALAWP TLL A D IDSTWT+A +++D+AG+LLA+         +PVT+    LG+                + LV  VVL+GAPI   + +W  AR MVA R VN YS  DW L + +R   L    AGI P+ V G+ENVDVTD++ GH  Y    + IL L+ LD
Sbjct:  417 EIMVSGFVFDEEDFVRPWEVQS-DNLERYALQWESKNLIAVSTAIQDWLTSRISMELMKQGAMLTVLSTLVAALAWPATLLAATDFIDSTWTIAIDRSDKAGRLLAEVLLKGFHGNRPVTLVGYSLGARVIFKCLQFLAETEKNAELVERVVLLGAPIPIKDENWGAARKMVAGRFVNAYSTNDWTLGVAFRASLLTQGLAGIQPIDVPGIENVDVTDLIEGHSSYLWATQQILELLELD 655          
BLAST of NO12G01960 vs. NCBI_GenBank
Match: XP_002899563.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY61923.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 148.3 bits (373), Expect = 1.100e-31
Identity = 168/643 (26.13%), Postives = 237/643 (36.86%), Query Frame = 0
Query:  165 EVEWRDMASIE-----ALTASHLHEIWEASQAKDKVHTGLRYAKITAAALGGGALLAFTGGLAAPAIGVGLS----ALSATGAVVAGFTTTASVATLFGASGAGLVGFKMKRRTAALSEFQFRHVERSEEEEDSDLGRMAICICISGWLLNDESEYDTPF-GVEPRNSDVAARLRLFYSLYNPDNVKYAAILATEFKGREDDLERECLHKYGTSPFDSYDTWSAVGGGSRSTTNTNSSMSIGSSKNLYKDVSEAEKEEVFRLIASYDKDSVSRITDADARRTRFTMKKSASRSSSISGGGVMCRTTSRDEDGQLTEEVRRIVGMRLNSPPFPCLSPRPPQTAKAEMSTSQSINEEEDGEKETEESVLLLRDTSRQSRGLQERSGDCGESTQSRLNSETSEILLELVSEDSVEVVPPW-WSETFPHLETFTLRWESKALFNLGSSVMEIVA-SLGQQAALEVLTFTAAATLVSALAWPITLLQAADMIDSTWTLACEKADRAGQLLAQT--------QPVTVADLGSPA-------------------SGLVHTVVLMGAPISCSESSWQKARGMVADRLVNCYSRKDWVLKIMYRYQKLVTNAAGIAPVIVAGVENVDVTDVVPGHQHYATKIKDILLLVGLD 769
            E++W D+   E      L A       +   AK K+    R A I AAA+ GGALLA TGGLAAPAI   L+                          G +GAG++G K   RT  + +F F  V   +         M + IC+SGWL +D    D P  G      D    LR FY   NPD V     +   +KGRED+        Y                          S+  G S+N    +++  K                 + D DAR + FT   S S                     +L                                           G K                                                   E +  W W + FP  + + L WE   L   G S+    A  +   A  E++ +TA A L +A+A P  +L+ AD+ID+ WT+    AD +G+LLA          +PVT+   G  A                    G+V   VL+G+P+  +   W  AR +V+ RL+N YS KDW+L +MYRYQ    N+AGIAP+ +AGVENVD+++++ GH  Y +KI  I+ L+ L+
Sbjct:    2 ELQWTDVTIEEIGIGQTLYAEATAMPLDKVAAKPKLMDWKRNAAIGAAAVTGGALLAVTGGLAAPAIAASLTXXXXXXXXXXXXXXXXXXXXXXXXXXGTAGAGVMGMKADTRTRGVHDFSFDLVSAGD--------GMNVYICVSGWLDDD----DPPVRGFRRAWGDSREYLRAFYRQKNPDKVDQVDQVMDRYKGREDEFFAILRRTY--------------------------SIEAGDSENDPLGIADLSK---------------MAVADQDARYSDFTSLNSDSXXXXXXXXXXXXXXXXXSSVWEL-------------------------------------------GTKH--------------------------------------------------EPLRAWRWKDRFPQGDQYCLIWEEAGLRRFGKSMRTFAAEQVSNYATTEIVKYTALAALFAAVAIPRVILRLADIIDNAWTVTMNAADTSGKLLADALRKREQGLRPVTLVGYGMGARLIFSCLKELAKSETIDESCGIVENAVLLGSPVPMARDDWANARRVVSGRLINGYSEKDWMLGVMYRYQGWALNSAGIAPIDIAGVENVDLSEIIGGHLEYKSKIGAIVDLLQLE 498          
BLAST of NO12G01960 vs. NCBI_GenBank
Match: XP_002976085.1 (transmembrane and coiled-coil domain-containing protein 4 isoform X3 [Selaginella moellendorffii] >EFJ22990.1 hypothetical protein SELMODRAFT_104378 [Selaginella moellendorffii])

HSP 1 Score: 147.1 bits (370), Expect = 2.400e-31
Identity = 86/228 (37.72%), Postives = 127/228 (55.70%), Query Frame = 0
Query:  570 PWWSETFP--HLETFTLRWESKALFNLGSSVME-IVASLGQQAALEVLTFTAAATLVSALAWPITLLQAADMIDSTWTLACEKADRAGQLLAQ--------TQPVTVADLGSPA---------------SGLVHTVVLMGAPISCSESSWQKARGMVADRLVNCYSRKDWVLKIMYRYQKLVTNAAGIAPVIVAGVENVDVTDVVPGHQHYATKIKDILLLVGLDDSF 772
            PW    FP   LE ++LRWE+K L  + S++ + +  ++ ++        T  + L++ALAWP  LL A D IDS WT+A +++D+AG++LA         ++PVT+      A                G+V  VVL+GAP+S     W  AR +VA R VNCYS  DW+L ++YR   L    AGI PV + G+ENV+VT ++ GH  Y +KI +IL  + LD+ F
Sbjct:  379 PW---IFPDADLERYSLRWETKILMAVSSAIQDWLTTAVAKELMKRGAMMTVLSGLLAALAWPSALLSATDFIDSRWTIAVDRSDKAGEILANCLLSGLHGSRPVTLLGFSLGARVIFSCLEHLAKKGNGGIVERVVLLGAPLSLDRKRWMNARKIVAGRFVNCYSSNDWILGVIYRASILSQGLAGIQPVALPGIENVNVTHLITGHSSYLSKIPEILETIHLDNYF 603          
BLAST of NO12G01960 vs. NCBI_GenBank
Match: EXC35400.1 (hypothetical protein L484_026725 [Morus notabilis])

HSP 1 Score: 147.1 bits (370), Expect = 2.400e-31
Identity = 90/240 (37.50%), Postives = 133/240 (55.42%), Query Frame = 0
Query:  554 EILLELVSEDSVEVVPPWWSETFPHLETFTLRWESKALFNLGSSVME-IVASLGQQAALEVLTFTAAATLVSALAWPITLLQAADMIDSTWTLACEKADRAGQLLAQ--------TQPVTVA--DLGSPA--------------SGLVHTVVLMGAPISCSESSWQKARGMVADRLVNCYSRKDWVLKIMYRYQKLVTNAAGIAPVIVAGVENVDVTDVVPGHQHYATKIKDILLLVGLD 769
            EI++     D  + V PW  +   +LE + L+WESK L  + +++ + + + +  +   +    T  +TL++ALAWP+TLL A D IDS WT+A +++D+AG+LLA+         +PVT+    LG+                + LV  VVL+GAPIS  +  W  AR MVA R VN YS  DW L + +R   L    AGI P+ V G+ENVDVTD++ GH  Y    + I+ L+ LD
Sbjct:  412 EIMVSGFVFDKEDFVRPWEGQD-DNLERYALQWESKNLIAVSTAIQDWLTSRIAMELMKQGAMLTVLSTLLAALAWPVTLLAATDFIDSKWTIAVDRSDKAGRLLAEVLLKGFHGNRPVTLVGYSLGARVIFKCLQFLAETENNAELVERVVLLGAPISIKDEKWGAARKMVAGRFVNAYSTNDWTLGVAFRASLLTQGLAGIQPIDVPGIENVDVTDLIEGHSSYLWTTQRIIELLELD 650          
BLAST of NO12G01960 vs. NCBI_GenBank
Match: PKA46499.1 (hypothetical protein AXF42_Ash012632 [Apostasia shenzhenica])

HSP 1 Score: 147.1 bits (370), Expect = 2.400e-31
Identity = 88/228 (38.60%), Postives = 126/228 (55.26%), Query Frame = 0
Query:  566 EVVPPWWSETFPHLETFTLRWESKALFNLGSSVME-IVASLGQQAALEVLTFTAAATLVSALAWPITLLQAADMIDSTWTLACEKADRAGQLLAQT--------QPVTVADLGSPA----------------SGLVHTVVLMGAPISCSESSWQKARGMVADRLVNCYSRKDWVLKIMYRYQKLVTNAAGIAPVIVAGVENVDVTDVVPGHQHYATKIKDILLLVGLD 769
            + V PW +    +LE + L WESK L ++ S++ + + +SL ++        T  +TLV+ALAWP  LL A D IDS W++A +++D+AG+LLA+T        +PVT+      A                 GLV  VVL+GAPIS +   W+ AR MV+ R +N YS  DW+L + +R   L    AGI PV + G+EN DVTD+V GH  Y   +  IL  + LD
Sbjct:  540 DFVSPWKAHE-DNLERYALLWESKHLISVSSAIQDWLTSSLTRELMKRGAMMTVLSTLVTALAWPAALLAATDFIDSKWSIAIDRSDKAGRLLAETLLKGLQGNRPVTLLGFSLGARVVFKCLQHLAESANNEGLVERVVLLGAPISLNNEQWEAARKMVSGRFINVYSTNDWMLGVTFRASLLTQGLAGIQPVDLPGIENADVTDIVDGHSSYVRAVPKILEQLELD 766          
The following BLAST results are available for this feature:
BLAST of NO12G01960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GAX20178.16.800e-3426.65hypothetical protein FisN_12Hh023 [Fistulifera sol... [more]
XP_009526727.15.800e-3327.20hypothetical protein PHYSODRAFT_503375 [Phytophtho... [more]
OAE22410.19.900e-3338.94hypothetical protein AXG93_2381s1060 [Marchantia p... [more]
PTQ33034.19.900e-3338.94hypothetical protein MARPO_0092s0008 [Marchantia p... [more]
GAX93764.12.900e-3226.18Hypothetical protein PINS_001665 [Pythium insidios... [more]
PON99515.16.400e-3238.33Alpha/Beta hydrolase fold containing protein [Trem... [more]
XP_002899563.11.100e-3126.13conserved hypothetical protein [Phytophthora infes... [more]
XP_002976085.12.400e-3137.72transmembrane and coiled-coil domain-containing pr... [more]
EXC35400.12.400e-3137.50hypothetical protein L484_026725 [Morus notabilis][more]
PKA46499.12.400e-3138.60hypothetical protein AXF42_Ash012632 [Apostasia sh... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL126nonsL126Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR008ngnoR008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010158NSK010158Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01960.1NO12G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592243gene_5354Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100021g52gene4710Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01960.1NO12G01960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01960 ID=NO12G01960|Name=NO12G01960|organism=Nannochloropsis oceanica|type=gene|length=2757bp
ATGGTACTGAGGATGCTTAATAAAGAGGAGCGGGTATGTCTACTCGGCCT
GGTGGCACTTTCCTTGCCCGTCCACGACCAAGCCTTGGGGGAGTACAACA
CGCAACTTTTGCGTGTTGTCTCCGGCCTGTTGGATCTGAAGGAGCACCAT
TGCCACGCCCTCCAGCCCTTGCTACACTCGGAAGGCAACGACTTAGAGAT
CCGACAAGCACAACTTCAGGCCTTTTTAAAGCCCTTTGTGCTGACGGGCA
GGCCTGAGCAGCAGAAGGGGCACACTGTAGCATCAGCAGTAGCCGCGGGA
CGGGAGCGTCCCGACCGCTATGACCCACCTCAACCGCAACAAGGGACCCA
GGGAGCACACAAAGAATGGGAGGCTAAGCAAGCACAACTGCGGTACTTGA
TTTTGCGGGATTTACTAGTTCATCTGGCTTGCTTGTCTATGTATGATGCA
CGCACGCGCCGGATCATGGTACGGCTGGCCTTGGACGCGTTCGAAGTGGA
GTGGCGTGACATGGCCAGCATTGAAGCATTAACAGCCTCGCACCTCCACG
AGATCTGGGAAGCATCGCAAGCGAAGGACAAGGTTCACACTGGTTTACGG
TACGCCAAAATCACGGCTGCCGCGTTGGGCGGTGGGGCCTTACTGGCATT
TACGGGTGGGCTAGCGGCTCCTGCGATTGGTGTAGGTTTGAGCGCTCTAA
GCGCCACAGGGGCCGTGGTTGCCGGCTTTACCACTACTGCCAGTGTCGCC
ACGCTTTTTGGAGCGTCAGGCGCGGGTTTGGTGGGATTCAAAATGAAGAG
GCGGACGGCTGCCCTATCAGAATTTCAGTTTCGGCATGTCGAGCGGAGCG
AGGAGGAGGAGGACAGCGACTTGGGGAGGATGGCCATTTGCATATGTATT
TCTGGGTGGCTGCTCAACGACGAGAGCGAGTATGACACTCCCTTCGGCGT
CGAGCCGCGAAACTCGGACGTGGCGGCTCGCCTGCGTTTGTTTTATTCCC
TTTACAACCCGGACAATGTCAAGTACGCGGCGATTTTGGCGACCGAGTTC
AAGGGTCGGGAGGACGACCTCGAGCGTGAGTGCTTGCACAAGTATGGAAC
GAGCCCCTTTGACAGCTATGACACTTGGAGCGCAGTCGGGGGTGGCAGCC
GTAGCACCACCAACACCAACAGCAGCATGAGCATTGGCAGCAGCAAGAAT
CTGTACAAGGACGTGTCAGAAGCGGAGAAGGAGGAGGTGTTTCGCCTCAT
TGCTTCCTACGATAAAGACTCTGTCAGCAGAATCACCGACGCGGACGCCC
GCAGGACGCGGTTTACCATGAAGAAGAGCGCCAGCAGAAGCAGCAGTATC
AGCGGCGGCGGTGTGATGTGCAGGACCACCAGTCGAGACGAGGACGGGCA
ATTGACGGAAGAGGTACGGCGTATTGTCGGTATGCGACTCAATTCTCCTC
CTTTCCCTTGTCTTTCTCCGCGTCCGCCACAAACAGCAAAAGCCGAGATG
TCAACATCCCAGAGCATCAATGAAGAGGAGGATGGGGAGAAGGAAACTGA
GGAAAGTGTGCTGCTACTAAGAGATACAAGCCGGCAATCTAGAGGACTAC
AGGAGCGCAGTGGCGATTGCGGAGAATCTACCCAATCACGATTGAACAGT
GAGACATCGGAAATCCTGCTCGAGCTGGTATCAGAGGACAGCGTGGAAGT
CGTCCCTCCGTGGTGGTCGGAGACTTTCCCCCACTTAGAAACTTTTACGC
TGCGGTGGGAGTCCAAGGCTCTATTCAATCTGGGTTCAAGCGTCATGGAG
ATTGTGGCTTCCCTGGGTCAGCAGGCGGCGTTGGAGGTCCTGACCTTCAC
GGCGGCGGCCACGCTTGTCTCGGCTCTGGCGTGGCCTATTACACTCTTGC
AAGCGGCTGACATGATTGACAGTACGTGGACATTGGCCTGCGAGAAGGCG
GATCGGGCGGGCCAGCTCTTGGCACAGgtattgatgaagaaggagcatgg
gcataggcctgttgtcttggtagggttcagtatgggagcgcgtgtgatta
tgtcttgcctgttggaactggcgagggtacacaaagcatgggaggtggac
gagatgaagcgaagagagcagcacacatctatgtcgagcgttgcatctcg
ggcctcgccatcattgtttaccccgacaacaacacagACACAGCCTGTCA
CTGTGGCGGACTTGGGGAGCCCTGCATCTGGTTTGGTGCACACGGTCGTA
TTGATGGGCGCACCAATCTCCTGCAGCGAGTCGAGCTGGCAAAAGGCGCG
TGGCATGGTAGCAGACAGACTTGTGAACTGCTATTCTCGCAAGGATTGGG
TCCTGAAGATCATGTACAGGTACCAGAAGCTCGTGACAAATGCTGCGGGC
ATCGCGCCGGTCATCGTCGCCGGCGTGGAGAACGTGGATGTCACGGATGT
GGTGCCGGGGCACCAGCACTATGCTACGAAAATCAAGGATATTCTGCTGC
TCGTCGGCCTCGACGATTCCTTCCGCGATTTAGCGTCTGGGGGGATGGCG
AAGAGGGAGGAGGCCAGGGCACGGCGCCGAGAGGCAGACTCGGAAATTGT
TGCCAATGCCGCTAGGGCAGAACAACCGGAGAAAATGGAAGACAAAGGTA
AAGAACAGCAGCACACGGCTAGGAGTGGCACAGCAGACGAAGGAACGGGT
GTTATCAGGGGGGGGGAAGAGGGATGCACCGTAAGTCATGAACAGGTGCA
CAAATAA
back to top

protein sequence of NO12G01960.1

>NO12G01960.1-protein ID=NO12G01960.1-protein|Name=NO12G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=849bp
MVLRMLNKEERVCLLGLVALSLPVHDQALGEYNTQLLRVVSGLLDLKEHH
CHALQPLLHSEGNDLEIRQAQLQAFLKPFVLTGRPEQQKGHTVASAVAAG
RERPDRYDPPQPQQGTQGAHKEWEAKQAQLRYLILRDLLVHLACLSMYDA
RTRRIMVRLALDAFEVEWRDMASIEALTASHLHEIWEASQAKDKVHTGLR
YAKITAAALGGGALLAFTGGLAAPAIGVGLSALSATGAVVAGFTTTASVA
TLFGASGAGLVGFKMKRRTAALSEFQFRHVERSEEEEDSDLGRMAICICI
SGWLLNDESEYDTPFGVEPRNSDVAARLRLFYSLYNPDNVKYAAILATEF
KGREDDLERECLHKYGTSPFDSYDTWSAVGGGSRSTTNTNSSMSIGSSKN
LYKDVSEAEKEEVFRLIASYDKDSVSRITDADARRTRFTMKKSASRSSSI
SGGGVMCRTTSRDEDGQLTEEVRRIVGMRLNSPPFPCLSPRPPQTAKAEM
STSQSINEEEDGEKETEESVLLLRDTSRQSRGLQERSGDCGESTQSRLNS
ETSEILLELVSEDSVEVVPPWWSETFPHLETFTLRWESKALFNLGSSVME
IVASLGQQAALEVLTFTAAATLVSALAWPITLLQAADMIDSTWTLACEKA
DRAGQLLAQTQPVTVADLGSPASGLVHTVVLMGAPISCSESSWQKARGMV
ADRLVNCYSRKDWVLKIMYRYQKLVTNAAGIAPVIVAGVENVDVTDVVPG
HQHYATKIKDILLLVGLDDSFRDLASGGMAKREEARARRREADSEIVANA
ARAEQPEKMEDKGKEQQHTARSGTADEGTGVIRGGEEGCTVSHEQVHK*
back to top
Synonyms
Publications