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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr12 | genome | chr12:555860..558616 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G01960.1 vs.
Match: EWM25844.1 (Protein of unknown function DUF726 [Nannochloropsis gaditana]) HSP 1 Score: 490.0 bits (1260), Expect = 1.500e-134 Identity = 280/488 (57.38%), Postives = 341/488 (69.88%), Query Frame = 0
Query: 1 MVLRMLNKEERVCLLGLVALSLPVHDQALGEYNTQLLRVVSGLLDLKEHHCHALQPLLHSEGNDLEIRQAQLQAFLKPFVLTGRPEQQKGHTVASAVAAGRERPDRYDPPQPQQGTQGAH---KEWEAK----QAQLRYLILRDLLVHLACLSMYDARTRRIMVRLALDAFEVEWRDMASIEALTASHLHEIWEASQAKDKVHTGLRYAKITAAALGGGALLAFTGGLAAPAIGVGLSALSATGAVVAGFTTTASVATLFGASGAGLVGFKMKRRTAALSEFQFRHVERSEEEEDSDLGRMAICICISGWLLNDESEYDTPFGVEPRNSDVAARLRLFYSLYNPDNVKYAAILATEFKGREDDLERECLHKYGTSPFDSYDTWSAVGGGSRSTTNTNSSMSIGSSKNLYKDVSEAEKEEVFRLIASYDKDSVSRITDADARRT-RFTMKKSASRSSSISGGGVMCRTTS--RDEDGQLTEEVRRIVGM 479
M L ML+ EERVCLLGL+ALS+P DQA G YN +LLR VS +L L+E+HC AL PLLHSEGND++IR QL AFLKPF + A A + Q Q H K + + + RYLILRDL++ LAC S+YDARTRRIM+RLA DAFE+ WR++A +EA TAS+L+EIWEA Q K+K++ GLRYAKITAAA+GGGALLA TGGLAAPAIG+GLSA+SATGAVVAG T+TASVATLFGASGAGLVG+KM+RRTAAL +F+FRHVE S ++++SDLGRMAICICISGWL+ DESEYDTPFGVEPRNSDVAARLRLFYS +NP N+KYA +LA EF+GRE +LE ECL KY SPFD D G S+S K LY + EAEKEE+F+LIASYD+ SV TD + R + + SR S S C+++S R +D ++ ++ M
Sbjct: 1 MALAMLSTEERVCLLGLLALSMPSQDQAFGRYNLRLLRTVSNMLGLQENHCSALYPLLHSEGNDVKIRHTQLLAFLKPFEGAESLAFDEKVQFAQASCKNHTYTEELGLKQEPPADQAYHISGKRFSGSAVYHERRRRYLILRDLMISLACRSLYDARTRRIMMRLASDAFEISWRNIACVEAFTASYLYEIWEARQEKEKINKGLRYAKITAAAVGGGALLALTGGLAAPAIGIGLSAMSATGAVVAGLTSTASVATLFGASGAGLVGYKMRRRTAALDQFEFRHVEPSGDKKESDLGRMAICICISGWLVEDESEYDTPFGVEPRNSDVAARLRLFYSRHNPQNIKYATLLADEFQGRESELEHECLRKYNASPFD--DRNKKKRGNSKS-----------PRKYLYDSLPEAEKEEIFQLIASYDEPSVHAGTDEHTHESVRISRRARLSRGDSAS-----CKSSSKCRSDDSSYSKSTTTLINM 470
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G01960.1 ID=NO12G01960.1|Name=NO12G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2547bp
ATGGTACTGAGGATGCTTAATAAAGAGGAGCGGGTATGTCTACTCGGCCT
GGTGGCACTTTCCTTGCCCGTCCACGACCAAGCCTTGGGGGAGTACAACA
CGCAACTTTTGCGTGTTGTCTCCGGCCTGTTGGATCTGAAGGAGCACCAT
TGCCACGCCCTCCAGCCCTTGCTACACTCGGAAGGCAACGACTTAGAGAT
CCGACAAGCACAACTTCAGGCCTTTTTAAAGCCCTTTGTGCTGACGGGCA
GGCCTGAGCAGCAGAAGGGGCACACTGTAGCATCAGCAGTAGCCGCGGGA
CGGGAGCGTCCCGACCGCTATGACCCACCTCAACCGCAACAAGGGACCCA
GGGAGCACACAAAGAATGGGAGGCTAAGCAAGCACAACTGCGGTACTTGA
TTTTGCGGGATTTACTAGTTCATCTGGCTTGCTTGTCTATGTATGATGCA
CGCACGCGCCGGATCATGGTACGGCTGGCCTTGGACGCGTTCGAAGTGGA
GTGGCGTGACATGGCCAGCATTGAAGCATTAACAGCCTCGCACCTCCACG
AGATCTGGGAAGCATCGCAAGCGAAGGACAAGGTTCACACTGGTTTACGG
TACGCCAAAATCACGGCTGCCGCGTTGGGCGGTGGGGCCTTACTGGCATT
TACGGGTGGGCTAGCGGCTCCTGCGATTGGTGTAGGTTTGAGCGCTCTAA
GCGCCACAGGGGCCGTGGTTGCCGGCTTTACCACTACTGCCAGTGTCGCC
ACGCTTTTTGGAGCGTCAGGCGCGGGTTTGGTGGGATTCAAAATGAAGAG
GCGGACGGCTGCCCTATCAGAATTTCAGTTTCGGCATGTCGAGCGGAGCG
AGGAGGAGGAGGACAGCGACTTGGGGAGGATGGCCATTTGCATATGTATT
TCTGGGTGGCTGCTCAACGACGAGAGCGAGTATGACACTCCCTTCGGCGT
CGAGCCGCGAAACTCGGACGTGGCGGCTCGCCTGCGTTTGTTTTATTCCC
TTTACAACCCGGACAATGTCAAGTACGCGGCGATTTTGGCGACCGAGTTC
AAGGGTCGGGAGGACGACCTCGAGCGTGAGTGCTTGCACAAGTATGGAAC
GAGCCCCTTTGACAGCTATGACACTTGGAGCGCAGTCGGGGGTGGCAGCC
GTAGCACCACCAACACCAACAGCAGCATGAGCATTGGCAGCAGCAAGAAT
CTGTACAAGGACGTGTCAGAAGCGGAGAAGGAGGAGGTGTTTCGCCTCAT
TGCTTCCTACGATAAAGACTCTGTCAGCAGAATCACCGACGCGGACGCCC
GCAGGACGCGGTTTACCATGAAGAAGAGCGCCAGCAGAAGCAGCAGTATC
AGCGGCGGCGGTGTGATGTGCAGGACCACCAGTCGAGACGAGGACGGGCA
ATTGACGGAAGAGGTACGGCGTATTGTCGGTATGCGACTCAATTCTCCTC
CTTTCCCTTGTCTTTCTCCGCGTCCGCCACAAACAGCAAAAGCCGAGATG
TCAACATCCCAGAGCATCAATGAAGAGGAGGATGGGGAGAAGGAAACTGA
GGAAAGTGTGCTGCTACTAAGAGATACAAGCCGGCAATCTAGAGGACTAC
AGGAGCGCAGTGGCGATTGCGGAGAATCTACCCAATCACGATTGAACAGT
GAGACATCGGAAATCCTGCTCGAGCTGGTATCAGAGGACAGCGTGGAAGT
CGTCCCTCCGTGGTGGTCGGAGACTTTCCCCCACTTAGAAACTTTTACGC
TGCGGTGGGAGTCCAAGGCTCTATTCAATCTGGGTTCAAGCGTCATGGAG
ATTGTGGCTTCCCTGGGTCAGCAGGCGGCGTTGGAGGTCCTGACCTTCAC
GGCGGCGGCCACGCTTGTCTCGGCTCTGGCGTGGCCTATTACACTCTTGC
AAGCGGCTGACATGATTGACAGTACGTGGACATTGGCCTGCGAGAAGGCG
GATCGGGCGGGCCAGCTCTTGGCACAGACACAGCCTGTCACTGTGGCGGA
CTTGGGGAGCCCTGCATCTGGTTTGGTGCACACGGTCGTATTGATGGGCG
CACCAATCTCCTGCAGCGAGTCGAGCTGGCAAAAGGCGCGTGGCATGGTA
GCAGACAGACTTGTGAACTGCTATTCTCGCAAGGATTGGGTCCTGAAGAT
CATGTACAGGTACCAGAAGCTCGTGACAAATGCTGCGGGCATCGCGCCGG
TCATCGTCGCCGGCGTGGAGAACGTGGATGTCACGGATGTGGTGCCGGGG
CACCAGCACTATGCTACGAAAATCAAGGATATTCTGCTGCTCGTCGGCCT
CGACGATTCCTTCCGCGATTTAGCGTCTGGGGGGATGGCGAAGAGGGAGG
AGGCCAGGGCACGGCGCCGAGAGGCAGACTCGGAAATTGTTGCCAATGCC
GCTAGGGCAGAACAACCGGAGAAAATGGAAGACAAAGGTAAAGAACAGCA
GCACACGGCTAGGAGTGGCACAGCAGACGAAGGAACGGGTGTTATCAGGG
GGGGGGAAGAGGGATGCACCGTAAGTCATGAACAGGTGCACAAATAA back to topprotein sequence of NO12G01960.1 >NO12G01960.1-protein ID=NO12G01960.1-protein|Name=NO12G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=849bp
MVLRMLNKEERVCLLGLVALSLPVHDQALGEYNTQLLRVVSGLLDLKEHH
CHALQPLLHSEGNDLEIRQAQLQAFLKPFVLTGRPEQQKGHTVASAVAAG
RERPDRYDPPQPQQGTQGAHKEWEAKQAQLRYLILRDLLVHLACLSMYDA
RTRRIMVRLALDAFEVEWRDMASIEALTASHLHEIWEASQAKDKVHTGLR
YAKITAAALGGGALLAFTGGLAAPAIGVGLSALSATGAVVAGFTTTASVA
TLFGASGAGLVGFKMKRRTAALSEFQFRHVERSEEEEDSDLGRMAICICI
SGWLLNDESEYDTPFGVEPRNSDVAARLRLFYSLYNPDNVKYAAILATEF
KGREDDLERECLHKYGTSPFDSYDTWSAVGGGSRSTTNTNSSMSIGSSKN
LYKDVSEAEKEEVFRLIASYDKDSVSRITDADARRTRFTMKKSASRSSSI
SGGGVMCRTTSRDEDGQLTEEVRRIVGMRLNSPPFPCLSPRPPQTAKAEM
STSQSINEEEDGEKETEESVLLLRDTSRQSRGLQERSGDCGESTQSRLNS
ETSEILLELVSEDSVEVVPPWWSETFPHLETFTLRWESKALFNLGSSVME
IVASLGQQAALEVLTFTAAATLVSALAWPITLLQAADMIDSTWTLACEKA
DRAGQLLAQTQPVTVADLGSPASGLVHTVVLMGAPISCSESSWQKARGMV
ADRLVNCYSRKDWVLKIMYRYQKLVTNAAGIAPVIVAGVENVDVTDVVPG
HQHYATKIKDILLLVGLDDSFRDLASGGMAKREEARARRREADSEIVANA
ARAEQPEKMEDKGKEQQHTARSGTADEGTGVIRGGEEGCTVSHEQVHK* back to topmRNA from alignment at chr12:555860..558616- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G01960.1 ID=NO12G01960.1|Name=NO12G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2757bp|location=Sequence derived from alignment at chr12:555860..558616- (Nannochloropsis oceanica)
ATGGTACTGAGGATGCTTAATAAAGAGGAGCGGGTATGTCTACTCGGCCT
GGTGGCACTTTCCTTGCCCGTCCACGACCAAGCCTTGGGGGAGTACAACA
CGCAACTTTTGCGTGTTGTCTCCGGCCTGTTGGATCTGAAGGAGCACCAT
TGCCACGCCCTCCAGCCCTTGCTACACTCGGAAGGCAACGACTTAGAGAT
CCGACAAGCACAACTTCAGGCCTTTTTAAAGCCCTTTGTGCTGACGGGCA
GGCCTGAGCAGCAGAAGGGGCACACTGTAGCATCAGCAGTAGCCGCGGGA
CGGGAGCGTCCCGACCGCTATGACCCACCTCAACCGCAACAAGGGACCCA
GGGAGCACACAAAGAATGGGAGGCTAAGCAAGCACAACTGCGGTACTTGA
TTTTGCGGGATTTACTAGTTCATCTGGCTTGCTTGTCTATGTATGATGCA
CGCACGCGCCGGATCATGGTACGGCTGGCCTTGGACGCGTTCGAAGTGGA
GTGGCGTGACATGGCCAGCATTGAAGCATTAACAGCCTCGCACCTCCACG
AGATCTGGGAAGCATCGCAAGCGAAGGACAAGGTTCACACTGGTTTACGG
TACGCCAAAATCACGGCTGCCGCGTTGGGCGGTGGGGCCTTACTGGCATT
TACGGGTGGGCTAGCGGCTCCTGCGATTGGTGTAGGTTTGAGCGCTCTAA
GCGCCACAGGGGCCGTGGTTGCCGGCTTTACCACTACTGCCAGTGTCGCC
ACGCTTTTTGGAGCGTCAGGCGCGGGTTTGGTGGGATTCAAAATGAAGAG
GCGGACGGCTGCCCTATCAGAATTTCAGTTTCGGCATGTCGAGCGGAGCG
AGGAGGAGGAGGACAGCGACTTGGGGAGGATGGCCATTTGCATATGTATT
TCTGGGTGGCTGCTCAACGACGAGAGCGAGTATGACACTCCCTTCGGCGT
CGAGCCGCGAAACTCGGACGTGGCGGCTCGCCTGCGTTTGTTTTATTCCC
TTTACAACCCGGACAATGTCAAGTACGCGGCGATTTTGGCGACCGAGTTC
AAGGGTCGGGAGGACGACCTCGAGCGTGAGTGCTTGCACAAGTATGGAAC
GAGCCCCTTTGACAGCTATGACACTTGGAGCGCAGTCGGGGGTGGCAGCC
GTAGCACCACCAACACCAACAGCAGCATGAGCATTGGCAGCAGCAAGAAT
CTGTACAAGGACGTGTCAGAAGCGGAGAAGGAGGAGGTGTTTCGCCTCAT
TGCTTCCTACGATAAAGACTCTGTCAGCAGAATCACCGACGCGGACGCCC
GCAGGACGCGGTTTACCATGAAGAAGAGCGCCAGCAGAAGCAGCAGTATC
AGCGGCGGCGGTGTGATGTGCAGGACCACCAGTCGAGACGAGGACGGGCA
ATTGACGGAAGAGGTACGGCGTATTGTCGGTATGCGACTCAATTCTCCTC
CTTTCCCTTGTCTTTCTCCGCGTCCGCCACAAACAGCAAAAGCCGAGATG
TCAACATCCCAGAGCATCAATGAAGAGGAGGATGGGGAGAAGGAAACTGA
GGAAAGTGTGCTGCTACTAAGAGATACAAGCCGGCAATCTAGAGGACTAC
AGGAGCGCAGTGGCGATTGCGGAGAATCTACCCAATCACGATTGAACAGT
GAGACATCGGAAATCCTGCTCGAGCTGGTATCAGAGGACAGCGTGGAAGT
CGTCCCTCCGTGGTGGTCGGAGACTTTCCCCCACTTAGAAACTTTTACGC
TGCGGTGGGAGTCCAAGGCTCTATTCAATCTGGGTTCAAGCGTCATGGAG
ATTGTGGCTTCCCTGGGTCAGCAGGCGGCGTTGGAGGTCCTGACCTTCAC
GGCGGCGGCCACGCTTGTCTCGGCTCTGGCGTGGCCTATTACACTCTTGC
AAGCGGCTGACATGATTGACAGTACGTGGACATTGGCCTGCGAGAAGGCG
GATCGGGCGGGCCAGCTCTTGGCACAGGTATTGATGAAGAAGGAGCATGG
GCATAGGCCTGTTGTCTTGGTAGGGTTCAGTATGGGAGCGCGTGTGATTA
TGTCTTGCCTGTTGGAACTGGCGAGGGTACACAAAGCATGGGAGGTGGAC
GAGATGAAGCGAAGAGAGCAGCACACATCTATGTCGAGCGTTGCATCTCG
GGCCTCGCCATCATTGTTTACCCCGACAACAACACAGACACAGCCTGTCA
CTGTGGCGGACTTGGGGAGCCCTGCATCTGGTTTGGTGCACACGGTCGTA
TTGATGGGCGCACCAATCTCCTGCAGCGAGTCGAGCTGGCAAAAGGCGCG
TGGCATGGTAGCAGACAGACTTGTGAACTGCTATTCTCGCAAGGATTGGG
TCCTGAAGATCATGTACAGGTACCAGAAGCTCGTGACAAATGCTGCGGGC
ATCGCGCCGGTCATCGTCGCCGGCGTGGAGAACGTGGATGTCACGGATGT
GGTGCCGGGGCACCAGCACTATGCTACGAAAATCAAGGATATTCTGCTGC
TCGTCGGCCTCGACGATTCCTTCCGCGATTTAGCGTCTGGGGGGATGGCG
AAGAGGGAGGAGGCCAGGGCACGGCGCCGAGAGGCAGACTCGGAAATTGT
TGCCAATGCCGCTAGGGCAGAACAACCGGAGAAAATGGAAGACAAAGGTA
AAGAACAGCAGCACACGGCTAGGAGTGGCACAGCAGACGAAGGAACGGGT
GTTATCAGGGGGGGGGAAGAGGGATGCACCGTAAGTCATGAACAGGTGCA
CAAATAA back to topCoding sequence (CDS) from alignment at chr12:555860..558616- >NO12G01960.1 ID=NO12G01960.1|Name=NO12G01960.1|organism=Nannochloropsis oceanica|type=CDS|length=2547bp|location=Sequence derived from alignment at chr12:555860..558616- (Nannochloropsis oceanica)
ATGGTACTGAGGATGCTTAATAAAGAGGAGCGGGTATGTCTACTCGGCCT
GGTGGCACTTTCCTTGCCCGTCCACGACCAAGCCTTGGGGGAGTACAACA
CGCAACTTTTGCGTGTTGTCTCCGGCCTGTTGGATCTGAAGGAGCACCAT
TGCCACGCCCTCCAGCCCTTGCTACACTCGGAAGGCAACGACTTAGAGAT
CCGACAAGCACAACTTCAGGCCTTTTTAAAGCCCTTTGTGCTGACGGGCA
GGCCTGAGCAGCAGAAGGGGCACACTGTAGCATCAGCAGTAGCCGCGGGA
CGGGAGCGTCCCGACCGCTATGACCCACCTCAACCGCAACAAGGGACCCA
GGGAGCACACAAAGAATGGGAGGCTAAGCAAGCACAACTGCGGTACTTGA
TTTTGCGGGATTTACTAGTTCATCTGGCTTGCTTGTCTATGTATGATGCA
CGCACGCGCCGGATCATGGTACGGCTGGCCTTGGACGCGTTCGAAGTGGA
GTGGCGTGACATGGCCAGCATTGAAGCATTAACAGCCTCGCACCTCCACG
AGATCTGGGAAGCATCGCAAGCGAAGGACAAGGTTCACACTGGTTTACGG
TACGCCAAAATCACGGCTGCCGCGTTGGGCGGTGGGGCCTTACTGGCATT
TACGGGTGGGCTAGCGGCTCCTGCGATTGGTGTAGGTTTGAGCGCTCTAA
GCGCCACAGGGGCCGTGGTTGCCGGCTTTACCACTACTGCCAGTGTCGCC
ACGCTTTTTGGAGCGTCAGGCGCGGGTTTGGTGGGATTCAAAATGAAGAG
GCGGACGGCTGCCCTATCAGAATTTCAGTTTCGGCATGTCGAGCGGAGCG
AGGAGGAGGAGGACAGCGACTTGGGGAGGATGGCCATTTGCATATGTATT
TCTGGGTGGCTGCTCAACGACGAGAGCGAGTATGACACTCCCTTCGGCGT
CGAGCCGCGAAACTCGGACGTGGCGGCTCGCCTGCGTTTGTTTTATTCCC
TTTACAACCCGGACAATGTCAAGTACGCGGCGATTTTGGCGACCGAGTTC
AAGGGTCGGGAGGACGACCTCGAGCGTGAGTGCTTGCACAAGTATGGAAC
GAGCCCCTTTGACAGCTATGACACTTGGAGCGCAGTCGGGGGTGGCAGCC
GTAGCACCACCAACACCAACAGCAGCATGAGCATTGGCAGCAGCAAGAAT
CTGTACAAGGACGTGTCAGAAGCGGAGAAGGAGGAGGTGTTTCGCCTCAT
TGCTTCCTACGATAAAGACTCTGTCAGCAGAATCACCGACGCGGACGCCC
GCAGGACGCGGTTTACCATGAAGAAGAGCGCCAGCAGAAGCAGCAGTATC
AGCGGCGGCGGTGTGATGTGCAGGACCACCAGTCGAGACGAGGACGGGCA
ATTGACGGAAGAGGTACGGCGTATTGTCGGTATGCGACTCAATTCTCCTC
CTTTCCCTTGTCTTTCTCCGCGTCCGCCACAAACAGCAAAAGCCGAGATG
TCAACATCCCAGAGCATCAATGAAGAGGAGGATGGGGAGAAGGAAACTGA
GGAAAGTGTGCTGCTACTAAGAGATACAAGCCGGCAATCTAGAGGACTAC
AGGAGCGCAGTGGCGATTGCGGAGAATCTACCCAATCACGATTGAACAGT
GAGACATCGGAAATCCTGCTCGAGCTGGTATCAGAGGACAGCGTGGAAGT
CGTCCCTCCGTGGTGGTCGGAGACTTTCCCCCACTTAGAAACTTTTACGC
TGCGGTGGGAGTCCAAGGCTCTATTCAATCTGGGTTCAAGCGTCATGGAG
ATTGTGGCTTCCCTGGGTCAGCAGGCGGCGTTGGAGGTCCTGACCTTCAC
GGCGGCGGCCACGCTTGTCTCGGCTCTGGCGTGGCCTATTACACTCTTGC
AAGCGGCTGACATGATTGACAGTACGTGGACATTGGCCTGCGAGAAGGCG
GATCGGGCGGGCCAGCTCTTGGCACAGACACAGCCTGTCACTGTGGCGGA
CTTGGGGAGCCCTGCATCTGGTTTGGTGCACACGGTCGTATTGATGGGCG
CACCAATCTCCTGCAGCGAGTCGAGCTGGCAAAAGGCGCGTGGCATGGTA
GCAGACAGACTTGTGAACTGCTATTCTCGCAAGGATTGGGTCCTGAAGAT
CATGTACAGGTACCAGAAGCTCGTGACAAATGCTGCGGGCATCGCGCCGG
TCATCGTCGCCGGCGTGGAGAACGTGGATGTCACGGATGTGGTGCCGGGG
CACCAGCACTATGCTACGAAAATCAAGGATATTCTGCTGCTCGTCGGCCT
CGACGATTCCTTCCGCGATTTAGCGTCTGGGGGGATGGCGAAGAGGGAGG
AGGCCAGGGCACGGCGCCGAGAGGCAGACTCGGAAATTGTTGCCAATGCC
GCTAGGGCAGAACAACCGGAGAAAATGGAAGACAAAGGTAAAGAACAGCA
GCACACGGCTAGGAGTGGCACAGCAGACGAAGGAACGGGTGTTATCAGGG
GGGGGGAAGAGGGATGCACCGTAAGTCATGAACAGGTGCACAAATAA back to top
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