NO12G00930, NO12G00930 (gene) Nannochloropsis oceanica

Overview
NameNO12G00930
Unique NameNO12G00930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length391
Alignment locationchr12:300385..300775 -

Link to JBrowse

Properties
Property NameValue
DescriptionAlpha beta hydrolase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:300385..300775 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Homology
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BLAST of NO12G00930 vs. NCBI_GenBank
Match: EWM25928.1 (alpha beta hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 67.4 bits (163), Expect = 2.200e-8
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 0 
Query:   19 VPEIDARRALRSARSQLRPSIDDTNKVGKIASHAGGHATATVRAYHGEGNIHAADLIK 77
            VPE DARRALR  RSQL  S  DT+K+G I S AGGH  AT+ AY+ EGN HA + I+
Sbjct:   14 VPEDDARRALRVVRSQLPVSARDTHKIGVIGSSAGGHLMATLMAYNDEGNAHATNTIE 71
The following BLAST results are available for this feature:
BLAST of NO12G00930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25928.12.200e-860.34alpha beta hydrolase [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR003ncniR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010004NSK010004Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00930.1NO12G00930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100134g9gene4593Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00930.1NO12G00930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00930 ID=NO12G00930|Name=NO12G00930|organism=Nannochloropsis oceanica|type=gene|length=391bp
ATGGCCTCATACGTGTCAACATATCGATGTGCCAGCACAGGgtacgtttt
tgatatcgcgcttttgttttaaggcgatgctttaaagcatttcagctcat
tcgatataatgttttccacataatcatagCTATCATGCCCCGGTTCCAGA
GATAGATGCTCGTCGAGCCCTGCGTAGTGCTCGTAGTCAGCTTCGACCCT
CCATTGACGACACCAACAAGgtagggcgtatttattcaatacatgtactt
ctttttgtcgggtcccacatatttcttgtccttgcttttcagGTTGGAAA
GATTGCCAGCCATGCGGGAGGCCATGCGACGGCAACTGTGCGGGCCTATC
ACGGTGAAGGCAATATTCATGCTGCAGATCTCATCAAATAG
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protein sequence of NO12G00930.1

>NO12G00930.1-protein ID=NO12G00930.1-protein|Name=NO12G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=77bp
MASYVSTYRCASTGYHAPVPEIDARRALRSARSQLRPSIDDTNKVGKIAS
HAGGHATATVRAYHGEGNIHAADLIK*
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Synonyms
Publications