NO12G00930.1, NO12G00930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00930.1
Unique NameNO12G00930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length231
Alignment locationchr12:300385..300775 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:300385..300775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00930.1 vs.
Match: EWM25928.1 (alpha beta hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 67.4 bits (163), Expect = 2.200e-8
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 0 
Query:   19 VPEIDARRALRSARSQLRPSIDDTNKVGKIASHAGGHATATVRAYHGEGNIHAADLIK 77
            VPE DARRALR  RSQL  S  DT+K+G I S AGGH  AT+ AY+ EGN HA + I+
Sbjct:   14 VPEDDARRALRVVRSQLPVSARDTHKIGVIGSSAGGHLMATLMAYNDEGNAHATNTIE 71
The following BLAST results are available for this feature:
BLAST of NO12G00930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25928.12.200e-860.34alpha beta hydrolase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00930NO12G00930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00930.1NO12G00930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00930.1.cds1NO12G00930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00930.1.cds2NO12G00930.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00930.1.cds3NO12G00930.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00930.1 ID=NO12G00930.1|Name=NO12G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=231bp
ATGGCCTCATACGTGTCAACATATCGATGTGCCAGCACAGGCTATCATGC
CCCGGTTCCAGAGATAGATGCTCGTCGAGCCCTGCGTAGTGCTCGTAGTC
AGCTTCGACCCTCCATTGACGACACCAACAAGGTTGGAAAGATTGCCAGC
CATGCGGGAGGCCATGCGACGGCAACTGTGCGGGCCTATCACGGTGAAGG
CAATATTCATGCTGCAGATCTCATCAAATAG
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protein sequence of NO12G00930.1

>NO12G00930.1-protein ID=NO12G00930.1-protein|Name=NO12G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=77bp
MASYVSTYRCASTGYHAPVPEIDARRALRSARSQLRPSIDDTNKVGKIAS
HAGGHATATVRAYHGEGNIHAADLIK*
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mRNA from alignment at chr12:300385..300775-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00930.1 ID=NO12G00930.1|Name=NO12G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=391bp|location=Sequence derived from alignment at chr12:300385..300775- (Nannochloropsis oceanica)
ATGGCCTCATACGTGTCAACATATCGATGTGCCAGCACAGGGTACGTTTT
TGATATCGCGCTTTTGTTTTAAGGCGATGCTTTAAAGCATTTCAGCTCAT
TCGATATAATGTTTTCCACATAATCATAGCTATCATGCCCCGGTTCCAGA
GATAGATGCTCGTCGAGCCCTGCGTAGTGCTCGTAGTCAGCTTCGACCCT
CCATTGACGACACCAACAAGGTAGGGCGTATTTATTCAATACATGTACTT
CTTTTTGTCGGGTCCCACATATTTCTTGTCCTTGCTTTTCAGGTTGGAAA
GATTGCCAGCCATGCGGGAGGCCATGCGACGGCAACTGTGCGGGCCTATC
ACGGTGAAGGCAATATTCATGCTGCAGATCTCATCAAATAG
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Coding sequence (CDS) from alignment at chr12:300385..300775-

>NO12G00930.1 ID=NO12G00930.1|Name=NO12G00930.1|organism=Nannochloropsis oceanica|type=CDS|length=231bp|location=Sequence derived from alignment at chr12:300385..300775- (Nannochloropsis oceanica)
ATGGCCTCATACGTGTCAACATATCGATGTGCCAGCACAGGCTATCATGC
CCCGGTTCCAGAGATAGATGCTCGTCGAGCCCTGCGTAGTGCTCGTAGTC
AGCTTCGACCCTCCATTGACGACACCAACAAGGTTGGAAAGATTGCCAGC
CATGCGGGAGGCCATGCGACGGCAACTGTGCGGGCCTATCACGGTGAAGG
CAATATTCATGCTGCAGATCTCATCAAATAG
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Synonyms
Publications