NO12G00570, NO12G00570 (gene) Nannochloropsis oceanica

Overview
NameNO12G00570
Unique NameNO12G00570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2497
Alignment locationchr12:211245..213741 +

Link to JBrowse

Properties
Property NameValue
DescriptiontRNA/rRNA methyltransferase (SpoU) family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:211245..213741 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0008173RNA methyltransferase activity
GO:0003723RNA binding
GO:0008168methyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR029064L30e-like
IPR029028Alpha/beta_knot_MTases
IPR004441rRNA_MeTrfase_TrmH
IPR001537SpoU_MeTrfase
IPR013123SpoU_subst-bd
Homology
BLAST of NO12G00570 vs. NCBI_GenBank
Match: PRW32608.1 (rRNA methyltransferase mitochondrial [Chlorella sorokiniana])

HSP 1 Score: 214.5 bits (545), Expect = 9.600e-52
Identity = 128/302 (42.38%), Postives = 167/302 (55.30%), Query Frame = 0
Query:  265 GGWGGSESSGYEEKDGEEDGREAGVSRAGGPRVMEGYDYLYGVNVVLAALRSGRREVEELYIQEGMTLKDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALPPSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKIARPTVLVLGNEGHGVRTNVARACDIQVRIE 567
            GGW      GY        G     +  GG R     D LYGV+ VLAAL++GRREV  LY+Q+GM L  +KDK A+Q     +  EE G K+    KH LNM+ADNRPHQG VL   PL++  + +LP + P   A                                           WL LDEV DPQNFGA LRSAY+LG+ GV+ C +NSA LS AVSKASAGA+EL+PV+A K++ + L   KE G+ ++G + EP +LP +   + RP +LV+GNEG+G+R  V R CD  ++IE
Sbjct:  978 GGWAEGGGGGY--------GASDPAAAPGGLRQFWIGDVLYGVSPVLAALQAGRREVHTLYLQDGMDLSKRKDKGAIQ--AAKKRAEELGAKVEYASKHDLNMVADNRPHQGVVLDCSPLEFEPLPSLPDA-PEGPAPSGRLPV------------------------------------WLCLDEVMDPQNFGAALRSAYFLGVDGVLTCHRNSAPLSAAVSKASAGAMELVPVHACKSLPQTLADAKERGWQVLGAAAEPGALPAASFVLQRPAILVMGNEGYGLRGAVRRLCDAVLQIE 1232          
BLAST of NO12G00570 vs. NCBI_GenBank
Match: CBJ33064.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 207.2 bits (526), Expect = 1.500e-49
Identity = 152/278 (54.68%), Postives = 191/278 (68.71%), Query Frame = 0
Query:  301 YDYLYGVNVVLAALRSGRREVEELYIQEGMTLKDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALP--------PSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKI---ARPTVLVLGNEGHGVRTNVARACDIQVRIEG 568
            +D +YG+  VL  LR+ RRE   LY Q+G+   +KKD+AA  RI  ++   E  V MT TDK +LN L  NRPHQGF+L+A+PL +  I  LP        PS+  + AT        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    WLALDEV DPQNFGALLRSA++ G  GVV CAKNSAAL+  VSK+SAGA+E+M V++  NM+RFL + +E G+ ++GTS+   S PL ++     A PT++VLGNEG+GVRTNV R C+  V + G
Sbjct:  230 FDMVYGIAPVLNVLRNNRREKLGLYCQDGLAPANKKDRAAANRI--YDIARETDVPMTTTDKGYLNTLCGNRPHQGFILKARPLKFEPILFLPRVEDVEADPSV-EATATEADAETSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGQVWLALDEVTDPQNFGALLRSAHFFGASGVVACAKNSAALTATVSKSSAGAVEVMRVHSTANMMRFLKRSRENGWRVVGTSVSERSGPLHELPAGPGAPPTIVVLGNEGYGVRTNVLRECEFLVEVAG 504          
BLAST of NO12G00570 vs. NCBI_GenBank
Match: PUZ54861.1 (hypothetical protein GQ55_5G165200 [Panicum hallii var. hallii])

HSP 1 Score: 204.1 bits (518), Expect = 1.300e-48
Identity = 126/296 (42.57%), Postives = 168/296 (56.76%), Query Frame = 0
Query:  276 EEKDGEEDGREAGVSRAGGPRVMEGYDYLYGVNVVLAALRSGRREVEELYIQEGMTL----KDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALPPSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKIARPTVLVLGNEGHGVRTNVARACDIQVRIEG 568
            +E  G + G+EAG S    P+++     +YGV  VLAAL +GRRE   LY+QEGM L    K KKDK AV ++L     E  G+K+  T KH LNM+ DNRPHQG VL A PL+ +++  L P                                                  W+ALDEV DPQN GA++RSAYY G +GVV+CAKNSA LS  VSKASAG+LEL+ + + +NM++FL    E G+ ++G ++   ++PLS+V+   PTVLVLG+EG G+R  V R+C   VRI G
Sbjct:  199 QENWGRKTGKEAGESTV--PKMVG--QGVYGVGPVLAALMAGRREFYALYMQEGMDLSGSNKKKKDKKAVDKVLRM--AERIGLKVIETSKHDLNMVVDNRPHQGLVLDASPLEMVNMKELDP----------------------------------------VRVEGGKAPVWIALDEVMDPQNLGAIIRSAYYFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLSEVETGVPTVLVLGSEGTGLRPLVERSCTHLVRIPG 448          
BLAST of NO12G00570 vs. NCBI_GenBank
Match: PUZ54862.1 (hypothetical protein GQ55_5G165200 [Panicum hallii var. hallii])

HSP 1 Score: 204.1 bits (518), Expect = 1.300e-48
Identity = 126/296 (42.57%), Postives = 168/296 (56.76%), Query Frame = 0
Query:  276 EEKDGEEDGREAGVSRAGGPRVMEGYDYLYGVNVVLAALRSGRREVEELYIQEGMTL----KDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALPPSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKIARPTVLVLGNEGHGVRTNVARACDIQVRIEG 568
            +E  G + G+EAG S    P+++     +YGV  VLAAL +GRRE   LY+QEGM L    K KKDK AV ++L     E  G+K+  T KH LNM+ DNRPHQG VL A PL+ +++  L P                                                  W+ALDEV DPQN GA++RSAYY G +GVV+CAKNSA LS  VSKASAG+LEL+ + + +NM++FL    E G+ ++G ++   ++PLS+V+   PTVLVLG+EG G+R  V R+C   VRI G
Sbjct:  199 QENWGRKTGKEAGESTV--PKMVG--QGVYGVGPVLAALMAGRREFYALYMQEGMDLSGSNKKKKDKKAVDKVLRM--AERIGLKVIETSKHDLNMVVDNRPHQGLVLDASPLEMVNMKELDP----------------------------------------VRVEGGKAPVWIALDEVMDPQNLGAIIRSAYYFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLSEVETGVPTVLVLGSEGTGLRPLVERSCTHLVRIPG 448          
BLAST of NO12G00570 vs. NCBI_GenBank
Match: PAN28601.1 (hypothetical protein PAHAL_E01699 [Panicum hallii])

HSP 1 Score: 203.8 bits (517), Expect = 1.700e-48
Identity = 125/296 (42.23%), Postives = 168/296 (56.76%), Query Frame = 0
Query:  276 EEKDGEEDGREAGVSRAGGPRVMEGYDYLYGVNVVLAALRSGRREVEELYIQEGMTL----KDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALPPSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKIARPTVLVLGNEGHGVRTNVARACDIQVRIEG 568
            +E  G + G+EAG S    P+++     +YGV  VLAAL +GRRE   LY+QEGM L    K KKDK AV ++L     E  G+K+  T KH LNM+ DNRPHQG VL A PL+ +++  L P                                                  W+ALDEV DPQN GA++RSAYY G +GVV+CAKNSA LS  VSKASAG+LEL+ + + +NM++FL    E G+ ++G ++   ++PLS+V+   PT+LVLG+EG G+R  V R+C   VRI G
Sbjct:  199 QENWGRKTGKEAGESTV--PKMVG--QGVYGVGPVLAALMAGRREYYALYMQEGMDLSGSNKKKKDKKAVDKVLRM--AERIGLKVIETSKHDLNMVVDNRPHQGLVLDASPLEMVNMKELDP----------------------------------------VRVEGGKAPVWIALDEVMDPQNLGAIIRSAYYFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLSEVETGVPTILVLGSEGTGLRPLVERSCTHLVRIPG 448          
BLAST of NO12G00570 vs. NCBI_GenBank
Match: XP_002458465.1 (rRNA methyltransferase 1, mitochondrial [Sorghum bicolor])

HSP 1 Score: 202.2 bits (513), Expect = 5.000e-48
Identity = 123/296 (41.55%), Postives = 168/296 (56.76%), Query Frame = 0
Query:  276 EEKDGEEDGREAGVSRAGGPRVMEGYDYLYGVNVVLAALRSGRREVEELYIQEGMTL----KDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALPPSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKIARPTVLVLGNEGHGVRTNVARACDIQVRIEG 568
            +E  G + G+EAG S    P ++     +YGV  VLAAL + RRE   LYIQE M L    K +KDK AV+++L     EE G+K+  T KH LNM+ DNRPHQG VL A PL+ ++I  L P                                                  W+ALDE+ DPQN GA++RSAYY G +GV++CAKNSA LS  VSKASAG+LEL+ + + +NM++FL    E G+ ++G ++   ++PLS+V+I  PT+LV+G+EG G+R  V R+C   VRI G
Sbjct:  236 QENWGRKTGKEAGESSV--PNIVG--QGVYGVGPVLAALMARRREFYALYIQESMDLSGNNKKRKDKKAVEKVLRM--AEEIGLKVIETSKHDLNMVVDNRPHQGVVLDASPLEMVNIKELDP----------------------------------------VRVEGGKAPVWIALDEIMDPQNLGAIIRSAYYFGAQGVILCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLSEVEIGVPTILVMGSEGTGLRPLVERSCTHLVRIPG 485          
BLAST of NO12G00570 vs. NCBI_GenBank
Match: XP_004969906.1 (rRNA methyltransferase 1, mitochondrial [Setaria italica] >KQL06919.1 hypothetical protein SETIT_001065mg [Setaria italica])

HSP 1 Score: 202.2 bits (513), Expect = 5.000e-48
Identity = 124/296 (41.89%), Postives = 168/296 (56.76%), Query Frame = 0
Query:  276 EEKDGEEDGREAGVSRAGGPRVMEGYDYLYGVNVVLAALRSGRREVEELYIQEGMTL----KDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALPPSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKIARPTVLVLGNEGHGVRTNVARACDIQVRIEG 568
            +E  G + G+EAG S    P+++     +YGV  VLAAL +GRRE   LY+QEGM L    K KKDK AV+++L     E+  +K+  T KH LNM+ DNRPHQG VL A PL+ +++  L P                                                  W+ALDEV DPQN GA++RSAYY G +GVV+CAKNSA LS  VSKASAG+LEL+ + + +NM+ FL    E G+ ++G ++   ++PLS+V+   PT+LVLG+EG G+R  V R+C   VRI G
Sbjct:  199 QENWGRKTGKEAGESTV--PKMVG--QGVYGVGPVLAALMAGRREFYALYMQEGMDLSGSNKKKKDKKAVEKVLRM--AEKISLKVIETSKHDLNMVVDNRPHQGLVLDASPLEMVNMKELDP----------------------------------------VRLEGGKAPVWIALDEVMDPQNLGAIIRSAYYFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMHFLSSSAENGWRVLGGTIANKAVPLSEVQTGVPTILVLGSEGTGLRPLVERSCTHLVRIPG 448          
BLAST of NO12G00570 vs. NCBI_GenBank
Match: OQU87505.1 (hypothetical protein SORBI_3003G291300 [Sorghum bicolor])

HSP 1 Score: 202.2 bits (513), Expect = 5.000e-48
Identity = 123/296 (41.55%), Postives = 168/296 (56.76%), Query Frame = 0
Query:  276 EEKDGEEDGREAGVSRAGGPRVMEGYDYLYGVNVVLAALRSGRREVEELYIQEGMTL----KDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALPPSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKIARPTVLVLGNEGHGVRTNVARACDIQVRIEG 568
            +E  G + G+EAG S    P ++     +YGV  VLAAL + RRE   LYIQE M L    K +KDK AV+++L     EE G+K+  T KH LNM+ DNRPHQG VL A PL+ ++I  L P                                                  W+ALDE+ DPQN GA++RSAYY G +GV++CAKNSA LS  VSKASAG+LEL+ + + +NM++FL    E G+ ++G ++   ++PLS+V+I  PT+LV+G+EG G+R  V R+C   VRI G
Sbjct:  236 QENWGRKTGKEAGESSV--PNIVG--QGVYGVGPVLAALMARRREFYALYIQESMDLSGNNKKRKDKKAVEKVLRM--AEEIGLKVIETSKHDLNMVVDNRPHQGVVLDASPLEMVNIKELDP----------------------------------------VRVEGGKAPVWIALDEIMDPQNLGAIIRSAYYFGAQGVILCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLSEVEIGVPTILVMGSEGTGLRPLVERSCTHLVRIPG 485          
BLAST of NO12G00570 vs. NCBI_GenBank
Match: NP_001141631.2 (uncharacterized protein LOC100273751 [Zea mays] >ACF86752.2 unknown [Zea mays] >AQL00683.1 tRNA/rRNA methyltransferase (SpoU) family protein [Zea mays])

HSP 1 Score: 200.3 bits (508), Expect = 1.900e-47
Identity = 123/296 (41.55%), Postives = 167/296 (56.42%), Query Frame = 0
Query:  276 EEKDGEEDGREAGVSRAGGPRVMEGYDYLYGVNVVLAALRSGRREVEELYIQEGMTL----KDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALPPSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKIARPTVLVLGNEGHGVRTNVARACDIQVRIEG 568
            +E  G   G+EAG S    P+++     +YGV  VLAAL + RRE   LYIQE M L    K +KDK AV+++L     EE G+ +  T KH LNM+ DNRPHQG VL A PL+ ++I  L P                                                  W+ALDE+ DPQN GA++RSAYY G +GVV+CAKNSA LS  VSKASAG+LEL+ + + +NM++FL    E G+ ++G ++   ++PLSQV++  PT+LV+G+EG G+R  V R+C   VRI G
Sbjct:  236 QENWGRNTGKEAGESSV--PKMVG--QGVYGVGPVLAALMARRREFYALYIQESMDLSGNNKKRKDKKAVEKVLRM--AEEIGLNVIETPKHDLNMVVDNRPHQGVVLDASPLEMVNIKELDP----------------------------------------VRVEGGKAPVWIALDEIMDPQNLGAIIRSAYYFGAQGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLSQVELGVPTILVMGSEGTGLRPLVERSCTHLVRIPG 485          
BLAST of NO12G00570 vs. NCBI_GenBank
Match: XP_006644689.1 (PREDICTED: uncharacterized tRNA/rRNA methyltransferase slr0955 [Oryza brachyantha])

HSP 1 Score: 197.2 bits (500), Expect = 1.600e-46
Identity = 120/296 (40.54%), Postives = 167/296 (56.42%), Query Frame = 0
Query:  276 EEKDGEEDGREAGVSRAGGPRVMEGYDYLYGVNVVLAALRSGRREVEELYIQEGMTL----KDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALPPSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKIARPTVLVLGNEGHGVRTNVARACDIQVRIEG 568
            +E  G +  +EAG S    P+++     +YGV  VLAAL +GRRE   +Y+QEGM L    K KKDK A++++L  +  E  G+K+    KH LNM+ DNRPHQG VL A PL+ ++   L P                                                  W+ALDEV DPQN GA++RSAY+ G +GVV+CAKNSA LS  VSKASAG+LEL+ + + +NM++FL    E G+ ++G ++ P ++PL++V    PT+LVLG+EG G+R  V R+C   VRI G
Sbjct:  210 QENWGRKTWKEAGESTV--PKMIG--QGVYGVGPVLAALMAGRREFYAMYMQEGMNLSGSNKKKKDKKAIEKVL--QLAESIGLKIIEASKHDLNMVVDNRPHQGLVLDASPLEMVNTKELEP----------------------------------------VKVDGGKAPVWIALDEVMDPQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTVAPKAVPLTEVVPGEPTILVLGSEGTGLRPLVERSCTHLVRIPG 459          
The following BLAST results are available for this feature:
BLAST of NO12G00570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
PRW32608.19.600e-5242.38rRNA methyltransferase mitochondrial [Chlorella so... [more]
CBJ33064.11.500e-4954.68conserved unknown protein [Ectocarpus siliculosus][more]
PUZ54861.11.300e-4842.57hypothetical protein GQ55_5G165200 [Panicum hallii... [more]
PUZ54862.11.300e-4842.57hypothetical protein GQ55_5G165200 [Panicum hallii... [more]
PAN28601.11.700e-4842.23hypothetical protein PAHAL_E01699 [Panicum hallii][more]
XP_002458465.15.000e-4841.55rRNA methyltransferase 1, mitochondrial [Sorghum b... [more]
XP_004969906.15.000e-4841.89rRNA methyltransferase 1, mitochondrial [Setaria i... [more]
OQU87505.15.000e-4841.55hypothetical protein SORBI_3003G291300 [Sorghum bi... [more]
NP_001141631.21.900e-4741.55uncharacterized protein LOC100273751 [Zea mays] >A... [more]
XP_006644689.11.600e-4640.54PREDICTED: uncharacterized tRNA/rRNA methyltransfe... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL128nonsL128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR070ncniR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR011ngnoR011Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009958NSK009958Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00570.1NO12G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|324055gene_9970Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00570.1NO12G00570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00570 ID=NO12G00570|Name=NO12G00570|organism=Nannochloropsis oceanica|type=gene|length=2497bp
ATGTTTGCACACGCTTTCCTCCTCTCCCCTCCGTCCTCGTCGTCTTCCCG
TCTCCTTCACGTGGTCAAACCTGTGGTACGGCGCTTGCGACAGCCCTCGT
TGGTAGTAGCCTTCTCGTCGGCCCCGTCTGATGGAGGGTACGCCGGACGT
CGAGAAGGAGGGAGGGACAGAGGACGGGGAGGTGCAGGAGGAGAAGGGAG
GGGCGGAGGAAGGTCGCCATATCGTGCTGGCGGCGGTAATGAAGGCGGAG
GAAGGAGTGGAGGGCGGGATAAAGACAGGAGTGGCGATATGGGGGGCGGG
GGAAGGTCATCGGAGCGAGGAGGAAGAAGAAGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGAAGAAGAAGGAGGTTATGCAGACAGAAGGAGTGGAGAAGGTGGTAGA
GGGATAGGTGAGCGGCGGATGGGGTACTCTGACCAAGGAGGGAGGGGGGC
AGGAGGAGGAGGAGGGGGAGGAGGAGGGTATGCGGAACGACGAGGAGGCG
GAGGAGGAGGTAGTTACGCTGATCGAGGCAGAGGAGGGAGAAGGGAGGGA
GGGGGGGAAAGAGGAGGAGGAGGTTACCGCGGCGTAGAAAGTCGAGGCCC
TCCTCGTCGCGACACTTCCCGTTCTTCCCGCCCTGTAGCGTCCCGTCGGC
CTCCCCCTCCTGTGGCCTGGACTTATGATACCTTCGACCCGGATGACAGG
ATGGCGGACAAGGACGAGGAAGGGATGGAGGGGGACTTGAGGGGTGGATG
GGGTGGTTCTGAAAGCAGTGGGTACGAGGAGAAGGACGGGGAGGAAGACG
GGAGGGAGGCGGGAGTGAGTCGAGCGGGCGGCCCCAGGGTGATGGAGGGG
TATGATTACCTGTACGGCGTTAACGTGGTGCTGGCGGCGCTGAGGTCGGG
AAGGAGGGAGGTTGAGGAGCTGTACATCCAAGAAGGGATGACTCTAAAGG
ACAAGAAAGACAAGGCGGCCGTGCAGAGGATCTTGACATGGGAGGGAGGG
GAGGAGGGAGGGGTGAAGATGACGGTGACGGACAAGCACCATCTGAACAT
GCTGGCAGACAACCGGCCGgtgaggaagggagggagagaggaaggaagat
agggaggggacgtcgatttggcttcttgtttctggtgatgattttaatgt
caatattcgcccccgttgaccaccctttctacgtcccttcctcccccctc
tctcgctccctccctccctcagCACCAGGGATTCGTTCTCCGTGCGAAGC
CCCTGGACTATATCGACATCGATGCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCGCTACACCTCCTCCTCCTCTTGCCGCGATCAACGCCGACCAACCGCA
AGACCAGCCGCGGCAGCAGCAGCAGCAACAGCAACAGCACGACAAACATC
TCTCTCATCCTCATCACCAGCAGCAGCAAGAGCATTGGCTCGCCTTGGAC
GAGGTTTGGGACCCCCAGAATTTCGGGGCCTTGTTGAGAAGCGCCTATTA
CCTCGGGATGAAGGGCGTGGTGGTGTGTGCGAAAAACAGTGCCGCTCTCT
CCCCTGCTGTGAGTAAAGCCAGCGCGGGAGCGCTAGAGCTCATGCCGGTG
TATGCAGgtatggtggtggcgatcccaccctccctccctccctccctccg
tcctacctttctcctcgcttccccctgttgctttacgattgatctcattt
gccattataagaagacttatctctcacaccctccctccctccctctctcc
ttcagTTAAGAACATGGTGCGGTTTTTGGACAAGTGCAAGGAGGAAGGTT
TTGCCATTATGGGTACTTCCCTCGAGCCGGCCTCACTCCCTCTATCACAG
gtaagggtggagaacgcaaccctccctcgcttcttccctccccccctccc
ttcttccctcccgccctttatcttcttttcctttctttccttactccagg
gatcatctcaacacatcctccctccctccgtccctccctccgttcctccc
cccctcagGTAAAGATCGCCAGGCCCACGGTATTAGTGCTCGGAAACGAG
GGACACGGCGTACGAACGAACGTGGCTCGGGCCTGCGATATCCAAGTCAG
GATCGAGGGCGGGGGGGAGGGCGGGGGAGAGGTGGACTCgttgaacgtga
gtgtgacgggagggattttgatgcactttttgctgagtcagCAGCAGCAG
CAGTAGCAGTAACAAAAAGAGTAGTGGAAGCAGCAGCAGCAGTAGCAGTA
ACAAAAAGAGTAGTGGAAGCAGCAGCAGCAGCAACAGTAACAGTAAGAGT
AGTGGAAGCAGCAGCAGCAGCACCAGGTGCTCTTCTACTACCCCTACGAC
AACAACAAAAACTACACCGCCAGCTGCAATGACAGCAGCAGTTGCAACAG
CACAAGTAGAAGCAGCAGCGGCAGCAACAGCAGCCATGGGAATTTAG
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protein sequence of NO12G00570.1

>NO12G00570.1-protein ID=NO12G00570.1-protein|Name=NO12G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=662bp
MFAHAFLLSPPSSSSSRLLHVVKPVVRRLRQPSLVVAFSSAPSDGGYAGR
REGGRDRGRGGAGGEGRGGGRSPYRAGGGNEGGGRSGGRDKDRSGDMGGG
GRSSERGGRRRGGGGGGGGGGGGGGGGGGGGGGGEEEGGYADRRSGEGGR
GIGERRMGYSDQGGRGAGGGGGGGGGYAERRGGGGGGSYADRGRGGRREG
GGERGGGGYRGVESRGPPRRDTSRSSRPVASRRPPPPVAWTYDTFDPDDR
MADKDEEGMEGDLRGGWGGSESSGYEEKDGEEDGREAGVSRAGGPRVMEG
YDYLYGVNVVLAALRSGRREVEELYIQEGMTLKDKKDKAAVQRILTWEGG
EEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALPPSLPPSL
ATPPPPLAAINADQPQDQPRQQQQQQQQHDKHLSHPHHQQQQEHWLALDE
VWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVY
AVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKIARPTVLVLGNEGHG
VRTNVARACDIQVRIEGGGEGGGEVDSSSSSSSNKKSSGSSSSSSSNKKS
SGSSSSSNSNSKSSGSSSSSTRCSSTTPTTTTKTTPPAAMTAAVATAQVE
AAAAATAAMGI*
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Synonyms
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