NO12G00570, NO12G00570 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G00570 vs. NCBI_GenBank
Match: PRW32608.1 (rRNA methyltransferase mitochondrial [Chlorella sorokiniana]) HSP 1 Score: 214.5 bits (545), Expect = 9.600e-52 Identity = 128/302 (42.38%), Postives = 167/302 (55.30%), Query Frame = 0 Query: 265 GGWGGSESSGYEEKDGEEDGREAGVSRAGGPRVMEGYDYLYGVNVVLAALRSGRREVEELYIQEGMTLKDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALPPSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKIARPTVLVLGNEGHGVRTNVARACDIQVRIE 567 GGW GY G + GG R D LYGV+ VLAAL++GRREV LY+Q+GM L +KDK A+Q + EE G K+ KH LNM+ADNRPHQG VL PL++ + +LP + P A WL LDEV DPQNFGA LRSAY+LG+ GV+ C +NSA LS AVSKASAGA+EL+PV+A K++ + L KE G+ ++G + EP +LP + + RP +LV+GNEG+G+R V R CD ++IE Sbjct: 978 GGWAEGGGGGY--------GASDPAAAPGGLRQFWIGDVLYGVSPVLAALQAGRREVHTLYLQDGMDLSKRKDKGAIQ--AAKKRAEELGAKVEYASKHDLNMVADNRPHQGVVLDCSPLEFEPLPSLPDA-PEGPAPSGRLPV------------------------------------WLCLDEVMDPQNFGAALRSAYFLGVDGVLTCHRNSAPLSAAVSKASAGAMELVPVHACKSLPQTLADAKERGWQVLGAAAEPGALPAASFVLQRPAILVMGNEGYGLRGAVRRLCDAVLQIE 1232
BLAST of NO12G00570 vs. NCBI_GenBank
Match: CBJ33064.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 207.2 bits (526), Expect = 1.500e-49 Identity = 152/278 (54.68%), Postives = 191/278 (68.71%), Query Frame = 0 Query: 301 YDYLYGVNVVLAALRSGRREVEELYIQEGMTLKDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALP--------PSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKI---ARPTVLVLGNEGHGVRTNVARACDIQVRIEG 568 +D +YG+ VL LR+ RRE LY Q+G+ +KKD+AA RI ++ E V MT TDK +LN L NRPHQGF+L+A+PL + I LP PS+ + AT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX WLALDEV DPQNFGALLRSA++ G GVV CAKNSAAL+ VSK+SAGA+E+M V++ NM+RFL + +E G+ ++GTS+ S PL ++ A PT++VLGNEG+GVRTNV R C+ V + G Sbjct: 230 FDMVYGIAPVLNVLRNNRREKLGLYCQDGLAPANKKDRAAANRI--YDIARETDVPMTTTDKGYLNTLCGNRPHQGFILKARPLKFEPILFLPRVEDVEADPSV-EATATEADAETSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGQVWLALDEVTDPQNFGALLRSAHFFGASGVVACAKNSAALTATVSKSSAGAVEVMRVHSTANMMRFLKRSRENGWRVVGTSVSERSGPLHELPAGPGAPPTIVVLGNEGYGVRTNVLRECEFLVEVAG 504
BLAST of NO12G00570 vs. NCBI_GenBank
Match: PUZ54861.1 (hypothetical protein GQ55_5G165200 [Panicum hallii var. hallii]) HSP 1 Score: 204.1 bits (518), Expect = 1.300e-48 Identity = 126/296 (42.57%), Postives = 168/296 (56.76%), Query Frame = 0 Query: 276 EEKDGEEDGREAGVSRAGGPRVMEGYDYLYGVNVVLAALRSGRREVEELYIQEGMTL----KDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALPPSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKIARPTVLVLGNEGHGVRTNVARACDIQVRIEG 568 +E G + G+EAG S P+++ +YGV VLAAL +GRRE LY+QEGM L K KKDK AV ++L E G+K+ T KH LNM+ DNRPHQG VL A PL+ +++ L P W+ALDEV DPQN GA++RSAYY G +GVV+CAKNSA LS VSKASAG+LEL+ + + +NM++FL E G+ ++G ++ ++PLS+V+ PTVLVLG+EG G+R V R+C VRI G Sbjct: 199 QENWGRKTGKEAGESTV--PKMVG--QGVYGVGPVLAALMAGRREFYALYMQEGMDLSGSNKKKKDKKAVDKVLRM--AERIGLKVIETSKHDLNMVVDNRPHQGLVLDASPLEMVNMKELDP----------------------------------------VRVEGGKAPVWIALDEVMDPQNLGAIIRSAYYFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLSEVETGVPTVLVLGSEGTGLRPLVERSCTHLVRIPG 448
BLAST of NO12G00570 vs. NCBI_GenBank
Match: PUZ54862.1 (hypothetical protein GQ55_5G165200 [Panicum hallii var. hallii]) HSP 1 Score: 204.1 bits (518), Expect = 1.300e-48 Identity = 126/296 (42.57%), Postives = 168/296 (56.76%), Query Frame = 0 Query: 276 EEKDGEEDGREAGVSRAGGPRVMEGYDYLYGVNVVLAALRSGRREVEELYIQEGMTL----KDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALPPSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKIARPTVLVLGNEGHGVRTNVARACDIQVRIEG 568 +E G + G+EAG S P+++ +YGV VLAAL +GRRE LY+QEGM L K KKDK AV ++L E G+K+ T KH LNM+ DNRPHQG VL A PL+ +++ L P W+ALDEV DPQN GA++RSAYY G +GVV+CAKNSA LS VSKASAG+LEL+ + + +NM++FL E G+ ++G ++ ++PLS+V+ PTVLVLG+EG G+R V R+C VRI G Sbjct: 199 QENWGRKTGKEAGESTV--PKMVG--QGVYGVGPVLAALMAGRREFYALYMQEGMDLSGSNKKKKDKKAVDKVLRM--AERIGLKVIETSKHDLNMVVDNRPHQGLVLDASPLEMVNMKELDP----------------------------------------VRVEGGKAPVWIALDEVMDPQNLGAIIRSAYYFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLSEVETGVPTVLVLGSEGTGLRPLVERSCTHLVRIPG 448
BLAST of NO12G00570 vs. NCBI_GenBank
Match: PAN28601.1 (hypothetical protein PAHAL_E01699 [Panicum hallii]) HSP 1 Score: 203.8 bits (517), Expect = 1.700e-48 Identity = 125/296 (42.23%), Postives = 168/296 (56.76%), Query Frame = 0 Query: 276 EEKDGEEDGREAGVSRAGGPRVMEGYDYLYGVNVVLAALRSGRREVEELYIQEGMTL----KDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALPPSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKIARPTVLVLGNEGHGVRTNVARACDIQVRIEG 568 +E G + G+EAG S P+++ +YGV VLAAL +GRRE LY+QEGM L K KKDK AV ++L E G+K+ T KH LNM+ DNRPHQG VL A PL+ +++ L P W+ALDEV DPQN GA++RSAYY G +GVV+CAKNSA LS VSKASAG+LEL+ + + +NM++FL E G+ ++G ++ ++PLS+V+ PT+LVLG+EG G+R V R+C VRI G Sbjct: 199 QENWGRKTGKEAGESTV--PKMVG--QGVYGVGPVLAALMAGRREYYALYMQEGMDLSGSNKKKKDKKAVDKVLRM--AERIGLKVIETSKHDLNMVVDNRPHQGLVLDASPLEMVNMKELDP----------------------------------------VRVEGGKAPVWIALDEVMDPQNLGAIIRSAYYFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLSEVETGVPTILVLGSEGTGLRPLVERSCTHLVRIPG 448
BLAST of NO12G00570 vs. NCBI_GenBank
Match: XP_002458465.1 (rRNA methyltransferase 1, mitochondrial [Sorghum bicolor]) HSP 1 Score: 202.2 bits (513), Expect = 5.000e-48 Identity = 123/296 (41.55%), Postives = 168/296 (56.76%), Query Frame = 0 Query: 276 EEKDGEEDGREAGVSRAGGPRVMEGYDYLYGVNVVLAALRSGRREVEELYIQEGMTL----KDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALPPSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKIARPTVLVLGNEGHGVRTNVARACDIQVRIEG 568 +E G + G+EAG S P ++ +YGV VLAAL + RRE LYIQE M L K +KDK AV+++L EE G+K+ T KH LNM+ DNRPHQG VL A PL+ ++I L P W+ALDE+ DPQN GA++RSAYY G +GV++CAKNSA LS VSKASAG+LEL+ + + +NM++FL E G+ ++G ++ ++PLS+V+I PT+LV+G+EG G+R V R+C VRI G Sbjct: 236 QENWGRKTGKEAGESSV--PNIVG--QGVYGVGPVLAALMARRREFYALYIQESMDLSGNNKKRKDKKAVEKVLRM--AEEIGLKVIETSKHDLNMVVDNRPHQGVVLDASPLEMVNIKELDP----------------------------------------VRVEGGKAPVWIALDEIMDPQNLGAIIRSAYYFGAQGVILCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLSEVEIGVPTILVMGSEGTGLRPLVERSCTHLVRIPG 485
BLAST of NO12G00570 vs. NCBI_GenBank
Match: XP_004969906.1 (rRNA methyltransferase 1, mitochondrial [Setaria italica] >KQL06919.1 hypothetical protein SETIT_001065mg [Setaria italica]) HSP 1 Score: 202.2 bits (513), Expect = 5.000e-48 Identity = 124/296 (41.89%), Postives = 168/296 (56.76%), Query Frame = 0 Query: 276 EEKDGEEDGREAGVSRAGGPRVMEGYDYLYGVNVVLAALRSGRREVEELYIQEGMTL----KDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALPPSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKIARPTVLVLGNEGHGVRTNVARACDIQVRIEG 568 +E G + G+EAG S P+++ +YGV VLAAL +GRRE LY+QEGM L K KKDK AV+++L E+ +K+ T KH LNM+ DNRPHQG VL A PL+ +++ L P W+ALDEV DPQN GA++RSAYY G +GVV+CAKNSA LS VSKASAG+LEL+ + + +NM+ FL E G+ ++G ++ ++PLS+V+ PT+LVLG+EG G+R V R+C VRI G Sbjct: 199 QENWGRKTGKEAGESTV--PKMVG--QGVYGVGPVLAALMAGRREFYALYMQEGMDLSGSNKKKKDKKAVEKVLRM--AEKISLKVIETSKHDLNMVVDNRPHQGLVLDASPLEMVNMKELDP----------------------------------------VRLEGGKAPVWIALDEVMDPQNLGAIIRSAYYFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMHFLSSSAENGWRVLGGTIANKAVPLSEVQTGVPTILVLGSEGTGLRPLVERSCTHLVRIPG 448
BLAST of NO12G00570 vs. NCBI_GenBank
Match: OQU87505.1 (hypothetical protein SORBI_3003G291300 [Sorghum bicolor]) HSP 1 Score: 202.2 bits (513), Expect = 5.000e-48 Identity = 123/296 (41.55%), Postives = 168/296 (56.76%), Query Frame = 0 Query: 276 EEKDGEEDGREAGVSRAGGPRVMEGYDYLYGVNVVLAALRSGRREVEELYIQEGMTL----KDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALPPSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKIARPTVLVLGNEGHGVRTNVARACDIQVRIEG 568 +E G + G+EAG S P ++ +YGV VLAAL + RRE LYIQE M L K +KDK AV+++L EE G+K+ T KH LNM+ DNRPHQG VL A PL+ ++I L P W+ALDE+ DPQN GA++RSAYY G +GV++CAKNSA LS VSKASAG+LEL+ + + +NM++FL E G+ ++G ++ ++PLS+V+I PT+LV+G+EG G+R V R+C VRI G Sbjct: 236 QENWGRKTGKEAGESSV--PNIVG--QGVYGVGPVLAALMARRREFYALYIQESMDLSGNNKKRKDKKAVEKVLRM--AEEIGLKVIETSKHDLNMVVDNRPHQGVVLDASPLEMVNIKELDP----------------------------------------VRVEGGKAPVWIALDEIMDPQNLGAIIRSAYYFGAQGVILCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLSEVEIGVPTILVMGSEGTGLRPLVERSCTHLVRIPG 485
BLAST of NO12G00570 vs. NCBI_GenBank
Match: NP_001141631.2 (uncharacterized protein LOC100273751 [Zea mays] >ACF86752.2 unknown [Zea mays] >AQL00683.1 tRNA/rRNA methyltransferase (SpoU) family protein [Zea mays]) HSP 1 Score: 200.3 bits (508), Expect = 1.900e-47 Identity = 123/296 (41.55%), Postives = 167/296 (56.42%), Query Frame = 0 Query: 276 EEKDGEEDGREAGVSRAGGPRVMEGYDYLYGVNVVLAALRSGRREVEELYIQEGMTL----KDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALPPSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKIARPTVLVLGNEGHGVRTNVARACDIQVRIEG 568 +E G G+EAG S P+++ +YGV VLAAL + RRE LYIQE M L K +KDK AV+++L EE G+ + T KH LNM+ DNRPHQG VL A PL+ ++I L P W+ALDE+ DPQN GA++RSAYY G +GVV+CAKNSA LS VSKASAG+LEL+ + + +NM++FL E G+ ++G ++ ++PLSQV++ PT+LV+G+EG G+R V R+C VRI G Sbjct: 236 QENWGRNTGKEAGESSV--PKMVG--QGVYGVGPVLAALMARRREFYALYIQESMDLSGNNKKRKDKKAVEKVLRM--AEEIGLNVIETPKHDLNMVVDNRPHQGVVLDASPLEMVNIKELDP----------------------------------------VRVEGGKAPVWIALDEIMDPQNLGAIIRSAYYFGAQGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLSQVELGVPTILVMGSEGTGLRPLVERSCTHLVRIPG 485
BLAST of NO12G00570 vs. NCBI_GenBank
Match: XP_006644689.1 (PREDICTED: uncharacterized tRNA/rRNA methyltransferase slr0955 [Oryza brachyantha]) HSP 1 Score: 197.2 bits (500), Expect = 1.600e-46 Identity = 120/296 (40.54%), Postives = 167/296 (56.42%), Query Frame = 0 Query: 276 EEKDGEEDGREAGVSRAGGPRVMEGYDYLYGVNVVLAALRSGRREVEELYIQEGMTL----KDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVLRAKPLDYIDIDALPPSLPPSLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNSAALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASLPLSQVKIARPTVLVLGNEGHGVRTNVARACDIQVRIEG 568 +E G + +EAG S P+++ +YGV VLAAL +GRRE +Y+QEGM L K KKDK A++++L + E G+K+ KH LNM+ DNRPHQG VL A PL+ ++ L P W+ALDEV DPQN GA++RSAY+ G +GVV+CAKNSA LS VSKASAG+LEL+ + + +NM++FL E G+ ++G ++ P ++PL++V PT+LVLG+EG G+R V R+C VRI G Sbjct: 210 QENWGRKTWKEAGESTV--PKMIG--QGVYGVGPVLAALMAGRREFYAMYMQEGMNLSGSNKKKKDKKAIEKVL--QLAESIGLKIIEASKHDLNMVVDNRPHQGLVLDASPLEMVNTKELEP----------------------------------------VKVDGGKAPVWIALDEVMDPQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTVAPKAVPLTEVVPGEPTILVLGSEGTGLRPLVERSCTHLVRIPG 459 The following BLAST results are available for this feature:
BLAST of NO12G00570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G00570 ID=NO12G00570|Name=NO12G00570|organism=Nannochloropsis oceanica|type=gene|length=2497bpback to top protein sequence of NO12G00570.1 >NO12G00570.1-protein ID=NO12G00570.1-protein|Name=NO12G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=662bpback to top Synonyms
Publications
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