NO12G00520, NO12G00520 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G00520 vs. NCBI_GenBank
Match: EWM25958.1 (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana]) HSP 1 Score: 204.1 bits (518), Expect = 1.700e-48 Identity = 101/125 (80.80%), Postives = 113/125 (90.40%), Query Frame = 0 Query: 1 MEPYQRTISSSSSGSKKSPHSGTSSQSTCFVQKLFTMVAVEDAAILSFTADGKSFEVKNPKRLENEVLPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHDCFQRGQPQLLEMLKRKTSNAH 126 MEPY R ++ + SKK+ +SSQSTCFV+KLFTMVAVED +ILSFT DGKSFEVKNPKRLE+E+LPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRH+CFQRG+PQLL+MLKRKTSNAH Sbjct: 1 MEPYNR---NTGAISKKASPPESSSQSTCFVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHECFQRGRPQLLDMLKRKTSNAH 122
BLAST of NO12G00520 vs. NCBI_GenBank
Match: EWM24707.1 (heat shock transcription factor [Nannochloropsis gaditana]) HSP 1 Score: 127.5 bits (319), Expect = 2.100e-25 Identity = 65/114 (57.02%), Postives = 82/114 (71.93%), Query Frame = 0 Query: 9 SSSSSGSKKSPHSGTSSQSTCFVQKLFTMVAVEDAAILSFTADGKSFEVKNPKRLENEVLPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHDCFQRGQPQLLEMLKRKTS 123 +S++S + S + F++KLF MV E+ I+SFT DG SF VK+P RLENEVLP+Y+RH F S VRQLNFY+FKK+SKER IWIYRH FQ+G+P LL+ LKRK S Sbjct: 47 NSTASEDDEDIQSDLVPSANTFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRKPS 160
BLAST of NO12G00520 vs. NCBI_GenBank
Match: CBJ30543.1 (Heat Shock transcription factor [Ectocarpus siliculosus]) HSP 1 Score: 123.6 bits (309), Expect = 3.000e-24 Identity = 60/112 (53.57%), Postives = 81/112 (72.32%), Query Frame = 0 Query: 11 SSSGSKKSPHSGTSSQSTCFVQKLFTMVAVEDAAILSFTADGKSFEVKNPKRLENEVLPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHDCFQRGQPQLLEMLKRKTS 123 S SG ++ T FV+KLF MV E +I+ F ADG +FEVK+P+RLE ++LP+Y+RH F S VRQLNFY+FKK+SKER++WIY+H F+R +P+LL LKRKT+ Sbjct: 349 SRSGDVPGMDVVSAGSVTSFVRKLFQMVQGECDSIVGFVADGTAFEVKDPRRLEQDILPKYFRHSRFQSLVRQLNFYSFKKISKERSVWIYKHAFFRRDEPELLHALKRKTN 460
BLAST of NO12G00520 vs. NCBI_GenBank
Match: XP_002181431.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47354.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 97.4 bits (241), Expect = 2.300e-16 Identity = 45/101 (44.55%), Postives = 70/101 (69.31%), Query Frame = 0 Query: 22 GTSSQSTCFVQKLFTMVAVEDAAILSFTADGKSFEV-KNPKRLENEVLPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHDCFQRGQPQLLEMLKRKT 122 G + + F+ KLF MV ++S+T +G +F + + RLE+E LP+Y+RH F S VRQLNFY+F+K+++ERN+WIY+H F R +P+ L M++R+T Sbjct: 22 GGTEPPSGFILKLFQMVNGAPDKVISWTPNGDAFIIGSDLNRLESETLPQYFRHNRFQSLVRQLNFYSFRKINRERNVWIYKHSLFHRDRPEDLNMVRRRT 122
BLAST of NO12G00520 vs. NCBI_GenBank
Match: XP_002288677.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94113.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 97.4 bits (241), Expect = 2.300e-16 Identity = 50/108 (46.30%), Postives = 65/108 (60.19%), Query Frame = 0 Query: 14 GSKKSPHSGTSSQSTCFVQKLFTMVAVEDAAILSFTADGKSFEVKNPKRLENEVLPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHDCFQRGQPQLLEMLKRKT 122 GS K SG FV KLF MV + I+S+ G++F + + RLE E LP Y+RH F S VRQLNFYNF+KV++ER W+Y H F R Q + L L+R+T Sbjct: 16 GSTKGAPSG-------FVMKLFQMVNGAEDDIVSWVPSGQAFRINDISRLEKETLPSYFRHSRFQSLVRQLNFYNFRKVNRERTFWVYYHPLFHRDQEENLHNLRRRT 116
BLAST of NO12G00520 vs. NCBI_GenBank
Match: CCA17061.1 (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 95.1 bits (235), Expect = 1.100e-15 Identity = 45/96 (46.88%), Postives = 68/96 (70.83%), Query Frame = 0 Query: 27 STCFVQKLFTMVAVEDAAILSFTADGKSFEVKNPKRLENEVLPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHDCFQRGQPQLLEMLKRKTS 123 S FV KL+ MV E +AI+S+ DG +F + +PKR+ E LP+Y+RHG F+S +RQLNFY+F +V +E + IY+H F++G+P LL +KR+ + Sbjct: 28 SGSFVSKLYRMVDAEPSAIISWIRDGTAFCIVDPKRMTQECLPKYFRHGRFSSLIRQLNFYSFYRV-QEGQLTIYQHSYFRKGRPDLLVHIKRRAA 122
BLAST of NO12G00520 vs. NCBI_GenBank
Match: CCI47100.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 92.8 bits (229), Expect = 5.600e-15 Identity = 48/112 (42.86%), Postives = 76/112 (67.86%), Query Frame = 0 Query: 11 SSSGSKKSPHSGTSSQSTCFVQKLFTMVAVEDAAILSFTADGKSFEVKNPKRLENEVLPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHDCFQRGQPQLLEMLKRKTS 123 S++ ++ + GTS FV KL+ MV E +AI+S+ DG +F + +PKR+ E LP+Y+RHG F+S +RQLNFY+F +V +E + IY+H F++G+P LL +KR+ + Sbjct: 15 STTSNELARDGGTSGS---FVSKLYRMVDGEPSAIISWIRDGTAFCIVDPKRMTQECLPKYFRHGRFSSLIRQLNFYSFYRV-QEGQLTIYQHSYFRKGRPDLLVHIKRRAA 122
BLAST of NO12G00520 vs. NCBI_GenBank
Match: OEU15390.1 (hypothetical protein FRACYDRAFT_240076 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 92.0 bits (227), Expect = 9.600e-15 Identity = 43/105 (40.95%), Postives = 70/105 (66.67%), Query Frame = 0 Query: 18 SPHSGTSSQSTCFVQKLFTMVAVEDAAILSFTADGKSFEV-KNPKRLENEVLPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHDCFQRGQPQLLEMLKRKT 122 S G ++ + F+ KL+ MV ++++T G +F + + RLE+E LP+Y+RH F S VRQLNFY+F+K+++ERN+WIY+H+ F R P+ L ++R+T Sbjct: 24 STSRGGNAVPSGFILKLYQMVNGAPDEVITWTPSGDAFIIGSDLNRLESETLPQYFRHNRFQSLVRQLNFYSFRKINRERNVWIYKHNLFHRDHPEELYQVRRRT 128
BLAST of NO12G00520 vs. NCBI_GenBank
Match: OQR91343.1 (HSF-type DNA-binding [Thraustotheca clavata]) HSP 1 Score: 90.9 bits (224), Expect = 2.100e-14 Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = 0 Query: 25 SQSTCFVQKLFTMVAVEDAAILSFTADGKSFEVKNPKRLENEVLPRYYRHGHFTSFVRQLNFYNFKKVSKE-----------RNIWIYRHDCFQRGQPQLLEMLKRKTSNA 125 S + F++K F M++ I + DG +F VK+PK +LP+Y++H +F+SFVRQLNFY F+K KE +N W + H+ F R +PQL+ +KRKT+N+ Sbjct: 4 STTAIFLKKTFDMISQSPEDIAEWGPDGTTFIVKDPKEFAATMLPKYFKHSNFSSFVRQLNFYGFRKSKKEVLMVVMDTSDIKNSWEFYHEHFNRNKPQLMSKIKRKTNNS 114
BLAST of NO12G00520 vs. NCBI_GenBank
Match: XP_008617522.1 (hypothetical protein SDRG_13218 [Saprolegnia diclina VS20] >EQC29063.1 hypothetical protein SDRG_13218 [Saprolegnia diclina VS20]) HSP 1 Score: 90.5 bits (223), Expect = 2.800e-14 Identity = 44/112 (39.29%), Postives = 69/112 (61.61%), Query Frame = 0 Query: 24 SSQSTCFVQKLFTMVAVEDAAILSFTADGKSFEVKNPKRLENEVLPRYYRHGHFTSFVRQLNFYNFKKVSKE-----------RNIWIYRHDCFQRGQPQLLEMLKRKTSNA 125 SS + F++K F MV+ I ++ DG +F VK+PK + +LP+Y++H +F+SFVRQLNFY F+K KE +N W + H+ F + +P L+ +KRKT+N+ Sbjct: 4 SSTAAIFLKKTFDMVSQSPTEIAAWAPDGATFVVKDPKEFASLMLPKYFKHSNFSSFVRQLNFYGFRKSKKEVLLVALESSDIKNSWEFYHENFHQHKPHLMAKIKRKTNNS 115 The following BLAST results are available for this feature:
BLAST of NO12G00520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G00520 ID=NO12G00520|Name=NO12G00520|organism=Nannochloropsis oceanica|type=gene|length=3352bpback to top protein sequence of NO12G00520.1 >NO12G00520.1-protein ID=NO12G00520.1-protein|Name=NO12G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=883bpback to top Synonyms
Publications
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