Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr12 genome chr12:192229..195580 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G00520.1 vs.
Match: EWM25958.1 (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana])
HSP 1 Score: 399.1 bits (1024), Expect = 3.700e-107
Identity = 393/920 (42.72%), Postives = 478/920 (51.96%), Query Frame = 0
Query: 1 MEPYQRTISSSSSGSKKSPHSGTSSQSTCFVQKLFTMVAVEDAAILSFTADGKSFEVKNPKRLENEVLPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHDCFQRGQPQLLEMLKRKTSNAHHPHHPFNLQNTISSSLSGGGGQGGGGRGIKGEGIRLDEHAVNMTLAKLKHKGGGGAGGR----GRRSPSPSYFTSHPNHHEQQQQQQQQQQQYPYSHHHNHGPAPFGHSLPPPPLTPSFQHHPARQCQPMDLPPYQEGGGRE-------GGFAPPTSAAAALPRNDSGATFSSTSTSDDSSCSVGAPAFPPPLLPAGTSPSSHHRNQQQQQQQQQQQQQQHYYQQQYAWQEG----GAIPSSSSPPFSLSPLARASSLEWGNSGAASNITTSSSRSNSTSFKHGQHYHNYQVQHRQCLQDQLQ-----QQQQQSHHPSLRSIIGSEGGRMTLMATLSDAGSARRNHTTNQSSSSTS-SSSGHNTTRENSMDDSLYSGEGKEEGGEGGGRG-----ITRPHPPRPLYYVSAEGQAPGSEGEGGSTSPSPATSCAVGGVGPLRMSPPSALCSWSRSLPEG--GREG---GRVKFEGAPGQ---PPQLLSALLLSREKSSTKTGGIPISPPPSIPTSLAPSSSPSSFPAGTPNHWAPGTKVMASSSTPASLPSSFSSSSMLMRKPHQLHLQHQMQPQTQLQQGRRERGRVAELPHASRMTPPSQRLY----NRRMPSSSEDEEAMEVGAEGESESSVVSSLSSDDDYGGEDEEEEEEQEQQQQQQLQQQQRRQQLQRQKQLLQQERRRRAQHHYHHHHHHHHHTLKTGGGVGGGKLGGKVGGAGMVSKRQQQIQQQQQQMELQQEWRKQQQLLQQQDVGVDEEEAAMQMASFKLGRFWGGGREGGGEGRAAVVKTVEV 883
MEPY R ++ + SKK+ +SSQSTCFV+KLFTMVAVED +ILSFT DGKSFEVKNPKRLE+E+LPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRH+CFQRG+PQLL+MLKRKTSNAHHPHHP+N+Q+T+ +G G GG G G+G+ +EHA M LAK+ K G GGR GRRS FT P P S PAP LPP P QHHP QCQPMDLP GG RE G P A+LPRN SG TFSSTSTSD+S S A PPP HH Q Q Q Q Q Y W +G P + PP SL P S ++ SR + + G Q QC Q Q+ ++H P GR LS AG A+ S + SG +TTRENS+DDS+ S + EGG GGRG + PHP RPLYYVSA EGEGGST+P G G + P R L +G GREG +F A G+ PP LL A + +K G ++ PPS+P S+ GT NHWAPGT+V+ SS+ P+S PSS SS + H + +G RE G + +LPHA R TP SQRLY R E+EE+ EG S+SS+VSSLSS+D++ D L R+ +Q+Q + RR +HH+HHHHHHHHH+ GG GG+LG + G+ + Q +++ + Q R + QDV VDEEEAAMQMASF+LGRFWGG G GEG + KT+EV
Sbjct: 1 MEPYNR---NTGAISKKASPPESSSQSTCFVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHECFQRGRPQLLDMLKRKTSNAHHPHHPYNIQHTMGGGRAGEGNGGGEG----GQGMPGNEHATKMALAKMTSKEAGRHGGRAPSGGRRSKPSPEFTYQPGFFS------------PLS------PAP----LPPSPYAHP-QHHPHMQCQPMDLPFQPHGGPREASPSAHGGPTLPLKHGHASLPRNASGDTFSSTSTSDES--SYAACGHPPP----------HH---PQHPTHSQPQPQHSPDLQSYGWAKGRLGMDGTPRCTLPP-SLPP-------------PPSTPYSTLSRPCPSPPEPGAR------QPPQCALPPSQGPHITYQRLETHVP--------PSGRPR---PLSSAGGAQGTEAYAPVPGPLSETGSGGHTTRENSLDDSVCSFH-RGEGGARGGRGPRSEHVHPPHPSRPLYYVSA-------EGEGGSTTPPSFPPSQARGQGKMSSLP--------RFLDQGVAGREGRGPSSPQFTMAVGRTQGPPSLLDARV-------SKGGKQGVALPPSLPASV-----------GTYNHWAPGTRVVGSSTLPSSFPSSHPSSH--GADGSRALSSHPGAGLCKSHRGEREAGHLIQLPHAFRSTPASQRLYPPSPQHRGGRGKEEEESGGEEEEG-SQSSLVSSLSSEDEFDSGD--------------LCHDHRQGSCSQQQQAFLEHVGRRQRHHHHHHHHHHHHSHPRHGG-EGGRLGKRAAHYGLGPIPRPQEARRKPRSSHSQTARPAAP-EKPQDVSVDEEEAAMQMASFRLGRFWGGAMGGRGEG---LKKTLEV 788
The following BLAST results are available for this feature:
BLAST of NO12G00520.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 Expect = 3.70e-107 / Id = 42.72 Sequence EWM25958.1
Match Name E-value Identity Description
EWM25958.1 3.700e-107 42.72 Winged helix-turn-helix transcription repressor [N... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO12G00520.1 ID=NO12G00520.1|Name=NO12G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2649bp back to top protein sequence of NO12G00520.1
>NO12G00520.1-protein ID=NO12G00520.1-protein|Name=NO12G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=883bp back to top mRNA from alignment at chr12:192229..195580-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00520.1 ID=NO12G00520.1|Name=NO12G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=3352bp|location=Sequence derived from alignment at chr12:192229..195580- (Nannochloropsis oceanica)ATGGAGCCTTATCAACGCACCATAAGCAGCAGCAGCAGCGGTAGCAAAAA
ATCACCCCACTCTGGTACCTCTTCGCAGTCCACCTGCTTCGTCCAGAAAC
TCTTTACCATGGTAGCTGTCGAGGATGCCGCCATCCTTTCCTTCACGGCA
G GTAAGACGCTCGAGATCTAACATGATGTTTCCAACTGCAATTTCCCTAC
CCGTAGTGTATTTCCTTCTTACTTCCTATCTGAGGGTATCCTTCTGGTGT
TTGAGCGTCGGGAGGGAGGGAGAAAGGGAAGGTGGCTGCTTTGCTTGTGT
TTTGGGATTCGAAGCGGTCTTGGTCTGTTGTCACTCTCCTCCTTTCCTCC
CGTTCCGTATGCCGACCCCCCCACCTTCATTTTTGCCTTGCATGATGGAG
ATGTTCCCTGAGATACACGCACATGTGCCTTGTGGATATTGTGATTATCC
TTCGTAATCCCCTGCACACGCACATCACATTCCTTCCATCATGCCTTCAC
CACTCTCTCCTTCCCTCCCTGTCAATCTCATTTCCCGGCCTAGCCCTGAA
GCGAAAGGGGGCAGCACACGCTCATCCCTCCCCCTCTTTCCCTCTCTCCC
CCCTCATCCTCATTTTCTCGTCCCAGACGGCAAGAGTTTCGAAGTCAAGA
ACCCGAAGCGCTTGGAAAATGAGGTCCTCCCCCGCTACTACCGTCACGGG
CACTTCACCTCCTTTGTTCGACAGCTGAACTTCTACAACTTCAAG GTATA
GAGCAAGGGAGGAAAGGAGGGACGGAGGGGCGGAGGGAGGGACGGAGGGA
TTGGTGATACACTGTCATGCCTGATTTGTTATGTCTCGATGTTCAAAAGA
AATATTTTGAACGGAAAATGAATCACAAGATTTGATTTTTCCATCCCTTG
GCACATTGGCGTTTCTCCATACTCCCTCTCTCCCTCCCTCCCTCCCTTCC
TTCCTTCCTTTCCCTCCTCGCAGAAAGTCTCCAAAGAACGCAACATTTGG
ATCTACCGTCATGACTGCTTCCAGCGCGGCCAGCCCCAGCTTCTGGAAAT
GCTGAAGCGCAAGACCAGCAACGCCCACCATCCACATCACCCCTTCAACC
TTCAAAACACCATCTCGTCGTCTCTTTCCGGCGGAGGCGGGCAGGGCGGG
GGGGGGCGAGGAATCAAGGGAGAGGGGATACGCCTTGACGAGCACGCCGT
TAACATGACACTGGCAAAGCTTAAGCACAAGGGAGGAGGGGGGGCTGGGG
GACGAGGTCGACGTTCGCCTTCCCCTTCCTACTTTACTTCCCACCCTAAC
CACCACGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTACCCTTA
CAGCCATCACCACAACCACGGCCCGGCTCCCTTCGGCCACTCCCTCCCTC
CCCCTCCCCTCACCCCATCCTTCCAGCACCACCCTGCGCGGCAGTGCCAG
CCCATGGATCTGCCTCCCTACCAAGAAGGGGGGGGGAGGGAGGGAGGATT
CGCCCCTCCAACATCTGCAGCTGCTGCTCTTCCCCGCAACGACAGCGGGG
CCACCTTTTCCTCCACGTCCACCTCCGACGACTCTTCGTGCTCAGTCGGC
GCGCCTGCCTTCCCTCCGCCCCTTCTTCCAGCCGGAACTTCACCCTCCTC
CCACCACCGGAATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCACTATTACCAGCAACAATATGCATGGCAAGAAGGAGGAGCCATC
CCGTCCTCTTCATCTCCTCCCTTCTCTCTGTCCCCCCTGGCACGTGCTTC
TTCCTTGGAGTGGGGCAACAGCGGCGCCGCCTCCAACATCACTACCAGCA
GCAGCAGGAGCAACAGCACGAGCTTTAAACACGGGCAGCATTACCACAAT
TATCAAGTACAACACCGACAGTGTCTCCAGGACCAGCTCCAGCAGCAGCA
GCAACAGTCTCACCACCCTTCTCTTCGCTCAATCATTGGAAGCGAAGGAG
GGCGTATGACTCTTATGGCCACTCTTTCCGACGCTGGTAGCGCCAGGAGG
AACCACACCACCAACCAAAGCAGCAGCAGCACCAGCAGTAGCAGTGGCCA
CAATACCACTCGCGAGAACAGCATGGACGATTCCCTCTACAGTGGTGAAG
GGAAGGAAGAAGGGGGGGAGGGAGGGGGGAGAGGGATTACCAGGCCACAC
CCTCCACGGCCTCTGTATTACGTGTCGGCGGAGGGCCAGGCCCCCGGGTC
GGAGGGAGAGGGAGGGAGCACCTCTCCCTCTCCCGCGACTTCGTGTGCTG
TAGGTGGAGTGGGCCCGCTGAGAATGTCCCCTCCTTCCGCCCTTTGCTCG
TGGAGTCGCTCGCTGCCCGAGGGAGGGAGGGAAGGAGGGAGGGTGAAATT
TGAAGGTGCACCAGGTCAGCCTCCGCAGTTGTTGTCCGCACTGTTGTTGA
GTCGTGAAAAGTCCTCAACAAAAACGGGAGGCATTCCTATTTCTCCGCCT
CCTTCCATCCCTACCTCCCTCGCACCCTCCTCTTCTCCGTCCTCCTTTCC
TGCCGGGACGCCTAACCACTGGGCACCAGGCACCAAGGTGATGGCCTCCT
CCTCCACCCCTGCCTCCCTCCCGTCCTCCTTCTCCTCTTCCTCTATGCTG
ATGAGGAAACCCCACCAGCTGCACTTGCAGCATCAGATGCAGCCTCAAAC
TCAGTTGCAGCAGGGAAGGAGGGAGCGAGGGAGGGTGGCAGAGCTGCCTC
ATGCCTCAAGGATGACTCCACCAAGTCAACGGTTGTACAATCGACGCATG
CCTTCCTCCTCCGAGGACGAGGAGGCGATGGAAGTAGGGGCCGAAGGGGA
GAGTGAGAGCAGTGTGGTTTCGAGCTTGTCGTCTGACGACGATTATGGCG
GGGAGGACGAGGAGGAGGAGGAGGAACAAGAGCAGCAGCAGCAGCAGCAG
TTGCAGCAGCAGCAGAGGCGGCAACAGCTGCAGAGGCAGAAGCAGCTGCT
GCAGCAGGAAAGGCGACGTCGAGCGCAGCACCACTACCACCACCATCATC
ATCACCATCATCACACTCTCAAGACGGGAGGGGGCGTGGGCGGAGGAAAA
TTGGGAGGGAAGGTGGGAGGAGCGGGAATGGTCTCGAAGCGCCAGCAGCA
GATTCAGCAGCAGCAACAGCAGATGGAGCTCCAACAGGAGTGGCGCAAGC
AGCAGCAGCTGCTGCAGCAGCAGGACGTGGGAGTAGACGAGGAGGAGGCG
GCGATGCAGATGGCGAGTTTCAAACTGGGTCGATTTTGGGGGGGAGGGAG
GGAGGGAGGGGGGGAAGGGAGGGCGGCGGTGGTCAAAACGGTGGAGGTGT
GA back to top Coding sequence (CDS) from alignment at chr12:192229..195580-
>NO12G00520.1 ID=NO12G00520.1|Name=NO12G00520.1|organism=Nannochloropsis oceanica|type=CDS|length=2649bp|location=Sequence derived from alignment at chr12:192229..195580- (Nannochloropsis oceanica) back to top