NO12G00260, NO12G00260 (gene) Nannochloropsis oceanica

Overview
NameNO12G00260
Unique NameNO12G00260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1294
Alignment locationchr12:85097..86390 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:85097..86390 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR022764Peptidase_S54_rhomboid_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO12G00260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR066ncniR066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00260.1NO12G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G00260.2NO12G00260.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609662gene_10088Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00260.1NO12G00260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G00260.2NO12G00260.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00260 ID=NO12G00260|Name=NO12G00260|organism=Nannochloropsis oceanica|type=gene|length=1294bp
AGCAGGCCTGCACATTACGAACTAAAAAATGTCCCTGTCTGAGTCTAAGG
AAAAATGGACGGCCCGCCTATTTGTGCTCATGATCATGCTGCATGTGGCG
CAGACCCTGTTGGTGGCCGAAGATGTCATGTGGAAGCACTGCTGCCTGCC
TTCTTTTGCCTCGCTGATCCAAATTACACCAGGCATCTACCCTCTCCACT
TCCTAATTCACGTGTCTTCTATAATTTTCCGCTGGGTTGGCCACTCGCTC
TTCCATGTGGATGTCTCGCATCTCTTTAGTAACCTCCTCCTCTTTGCATG
GGTTGGGCCGGCACTCGAGCACGGCCACGACGGATTCTTAGGAGAAGGGG
TGAGTGAACGAGTTATGACAATTGAAATTCATACACAAGGGCTCTTTCTA
AACTTCCATATTGCACAGGGCTATGTACTCTTGCTTTTGTTTATCTGGTG
CTGCAAACCTCTGGTCGCTGGACTTCTGACGGCACTCCTGTGGCCAGgta
agaattctattacggactatacagaaagttatttaagttttctattattt
ttatttttaaggggtttattcgcctctaggcgctttgccgccggcatggt
gacagctacttctatcatattttgagcaccaaaataagcccgccccgcat
gtgaaggggatggagatgaaatgagaaagagagtcggcttttttgaggct
caaatctaatctcaattccatagacagtgtagctcgggtaattctcaagt
cgtacgttaaaacatgacgcagtctacaatttgccttacttctttcattt
ctattcactggtccttccacctatccagGAACGTACAAGTGCAGTACGGG
GTTTGCTGGCGTTTACTATGGCTTGCTAGCAGTCGAAGTTTGTCTCTTCT
ATCGCAGCCGGCGCATATGGGAAGTAGCAGGCCTGGTCAAGCATGCTTTT
TTATTAAAAACTATTATTTTGGTATGGGAAGAGCTCCGTGCAGACTCCTC
AGTGTTGAAGGACAAGTCTGACGGAACCCACCATGCGGGTCATTTGGCAG
GCATACTGACGGGTTGCCTCTTTATGCTTGTAATGCAATACTCCCTCCGT
TTCCAAAACCTCGCTCGGAAAATATGCAGGCGATGGGCTCTGCCGTTTCC
GTTCTTAGACGAGACGAGTATCGCGACGATCGCCAAAGAGGGGGATGATA
CAAGTAAAGGAATCGTGGACGGCGCTTAGAAAATGATCGTTGACCGAGCA
AATTACTGACGAAACAAATCAAAATGTCTGAAAATGTATTCCAG
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protein sequence of NO12G00260.1

>NO12G00260.1-protein ID=NO12G00260.1-protein|Name=NO12G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MSLSESKEKWTARLFVLMIMLHVAQTLLVAEDVMWKHCCLPSFASLIQIT
PGIYPLHFLIHVSSIIFRWVGHSLFHVDVSHLFSNLLLFAWVGPALEHGH
DGFLGEGGYVLLLLFIWCCKPLVAGLLTALLWPGTYKCSTGFAGVYYGLL
AVEVCLFYRSRRIWEVAGLVKHAFLLKTIILVWEELRADSSVLKDKSDGT
HHAGHLAGILTGCLFMLVMQYSLRFQNLARKICRRWALPFPFLDETSIAT
IAKEGDDTSKGIVDGA*
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protein sequence of NO12G00260.2

>NO12G00260.2-protein ID=NO12G00260.2-protein|Name=NO12G00260.2|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MSLSESKEKWTARLFVLMIMLHVAQTLLVAEDVMWKHCCLPSFASLIQIT
PGIYPLHFLIHVSSIIFRWVGHSLFHVDVSHLFSNLLLFAWVGPALEHGH
DGFLGEGVSERVMTIEIHTQGLFLNFHIAQGYVLLLLFIWCCKPLVAGLL
TALLWPGTYKCSTGFAGVYYGLLAVEVCLFYRSRRIWEVAGLVKHAFLLK
TIILVWEELRADSSVLKDKSDGTHHAGHLAGILTGCLFMLVMQYSLRFQN
LARKICRRWALPFPFLDETSIATIAKEGDDTSKGIVDGA*
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Synonyms
Publications