NO12G00260.2, NO12G00260.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00260.2
Unique NameNO12G00260.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length963
Alignment locationchr12:85097..86390 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:85097..86390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G00260.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00260NO12G00260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00260.2NO12G00260.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00260.2.cds1NO12G00260.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00260.2.cds2NO12G00260.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00260.2 ID=NO12G00260.2|Name=NO12G00260.2|organism=Nannochloropsis oceanica|type=mRNA|length=963bp
AGCAGGCCTGCACATTACGAACTAAAAAATGTCCCTGTCTGAGTCTAAGG
AAAAATGGACGGCCCGCCTATTTGTGCTCATGATCATGCTGCATGTGGCG
CAGACCCTGTTGGTGGCCGAAGATGTCATGTGGAAGCACTGCTGCCTGCC
TTCTTTTGCCTCGCTGATCCAAATTACACCAGGCATCTACCCTCTCCACT
TCCTAATTCACGTGTCTTCTATAATTTTCCGCTGGGTTGGCCACTCGCTC
TTCCATGTGGATGTCTCGCATCTCTTTAGTAACCTCCTCCTCTTTGCATG
GGTTGGGCCGGCACTCGAGCACGGCCACGACGGATTCTTAGGAGAAGGGG
TGAGTGAACGAGTTATGACAATTGAAATTCATACACAAGGGCTCTTTCTA
AACTTCCATATTGCACAGGGCTATGTACTCTTGCTTTTGTTTATCTGGTG
CTGCAAACCTCTGGTCGCTGGACTTCTGACGGCACTCCTGTGGCCAGGAA
CGTACAAGTGCAGTACGGGGTTTGCTGGCGTTTACTATGGCTTGCTAGCA
GTCGAAGTTTGTCTCTTCTATCGCAGCCGGCGCATATGGGAAGTAGCAGG
CCTGGTCAAGCATGCTTTTTTATTAAAAACTATTATTTTGGTATGGGAAG
AGCTCCGTGCAGACTCCTCAGTGTTGAAGGACAAGTCTGACGGAACCCAC
CATGCGGGTCATTTGGCAGGCATACTGACGGGTTGCCTCTTTATGCTTGT
AATGCAATACTCCCTCCGTTTCCAAAACCTCGCTCGGAAAATATGCAGGC
GATGGGCTCTGCCGTTTCCGTTCTTAGACGAGACGAGTATCGCGACGATC
GCCAAAGAGGGGGATGATACAAGTAAAGGAATCGTGGACGGCGCTTAGAA
AATGATCGTTGACCGAGCAAATTACTGACGAAACAAATCAAAATGTCTGA
AAATGTATTCCAG
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protein sequence of NO12G00260.2

>NO12G00260.2-protein ID=NO12G00260.2-protein|Name=NO12G00260.2|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MSLSESKEKWTARLFVLMIMLHVAQTLLVAEDVMWKHCCLPSFASLIQIT
PGIYPLHFLIHVSSIIFRWVGHSLFHVDVSHLFSNLLLFAWVGPALEHGH
DGFLGEGVSERVMTIEIHTQGLFLNFHIAQGYVLLLLFIWCCKPLVAGLL
TALLWPGTYKCSTGFAGVYYGLLAVEVCLFYRSRRIWEVAGLVKHAFLLK
TIILVWEELRADSSVLKDKSDGTHHAGHLAGILTGCLFMLVMQYSLRFQN
LARKICRRWALPFPFLDETSIATIAKEGDDTSKGIVDGA*
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mRNA from alignment at chr12:85097..86390+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00260.2 ID=NO12G00260.2|Name=NO12G00260.2|organism=Nannochloropsis oceanica|type=mRNA|length=1294bp|location=Sequence derived from alignment at chr12:85097..86390+ (Nannochloropsis oceanica)
AGCAGGCCTGCACATTACGAACTAAAAAATGTCCCTGTCTGAGTCTAAGG
AAAAATGGACGGCCCGCCTATTTGTGCTCATGATCATGCTGCATGTGGCG
CAGACCCTGTTGGTGGCCGAAGATGTCATGTGGAAGCACTGCTGCCTGCC
TTCTTTTGCCTCGCTGATCCAAATTACACCAGGCATCTACCCTCTCCACT
TCCTAATTCACGTGTCTTCTATAATTTTCCGCTGGGTTGGCCACTCGCTC
TTCCATGTGGATGTCTCGCATCTCTTTAGTAACCTCCTCCTCTTTGCATG
GGTTGGGCCGGCACTCGAGCACGGCCACGACGGATTCTTAGGAGAAGGGG
TGAGTGAACGAGTTATGACAATTGAAATTCATACACAAGGGCTCTTTCTA
AACTTCCATATTGCACAGGGCTATGTACTCTTGCTTTTGTTTATCTGGTG
CTGCAAACCTCTGGTCGCTGGACTTCTGACGGCACTCCTGTGGCCAGGTA
AGAATTCTATTACGGACTATACAGAAAGTTATTTAAGTTTTCTATTATTT
TTATTTTTAAGGGGTTTATTCGCCTCTAGGCGCTTTGCCGCCGGCATGGT
GACAGCTACTTCTATCATATTTTGAGCACCAAAATAAGCCCGCCCCGCAT
GTGAAGGGGATGGAGATGAAATGAGAAAGAGAGTCGGCTTTTTTGAGGCT
CAAATCTAATCTCAATTCCATAGACAGTGTAGCTCGGGTAATTCTCAAGT
CGTACGTTAAAACATGACGCAGTCTACAATTTGCCTTACTTCTTTCATTT
CTATTCACTGGTCCTTCCACCTATCCAGGAACGTACAAGTGCAGTACGGG
GTTTGCTGGCGTTTACTATGGCTTGCTAGCAGTCGAAGTTTGTCTCTTCT
ATCGCAGCCGGCGCATATGGGAAGTAGCAGGCCTGGTCAAGCATGCTTTT
TTATTAAAAACTATTATTTTGGTATGGGAAGAGCTCCGTGCAGACTCCTC
AGTGTTGAAGGACAAGTCTGACGGAACCCACCATGCGGGTCATTTGGCAG
GCATACTGACGGGTTGCCTCTTTATGCTTGTAATGCAATACTCCCTCCGT
TTCCAAAACCTCGCTCGGAAAATATGCAGGCGATGGGCTCTGCCGTTTCC
GTTCTTAGACGAGACGAGTATCGCGACGATCGCCAAAGAGGGGGATGATA
CAAGTAAAGGAATCGTGGACGGCGCTTAGAAAATGATCGTTGACCGAGCA
AATTACTGACGAAACAAATCAAAATGTCTGAAAATGTATTCCAG
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Coding sequence (CDS) from alignment at chr12:85097..86390+

>NO12G00260.2 ID=NO12G00260.2|Name=NO12G00260.2|organism=Nannochloropsis oceanica|type=CDS|length=870bp|location=Sequence derived from alignment at chr12:85097..86390+ (Nannochloropsis oceanica)
ATGTCCCTGTCTGAGTCTAAGGAAAAATGGACGGCCCGCCTATTTGTGCT
CATGATCATGCTGCATGTGGCGCAGACCCTGTTGGTGGCCGAAGATGTCA
TGTGGAAGCACTGCTGCCTGCCTTCTTTTGCCTCGCTGATCCAAATTACA
CCAGGCATCTACCCTCTCCACTTCCTAATTCACGTGTCTTCTATAATTTT
CCGCTGGGTTGGCCACTCGCTCTTCCATGTGGATGTCTCGCATCTCTTTA
GTAACCTCCTCCTCTTTGCATGGGTTGGGCCGGCACTCGAGCACGGCCAC
GACGGATTCTTAGGAGAAGGGGTGAGTGAACGAGTTATGACAATTGAAAT
TCATACACAAGGGCTCTTTCTAAACTTCCATATTGCACAGGGCTATGTAC
TCTTGCTTTTGTTTATCTGGTGCTGCAAACCTCTGGTCGCTGGACTTCTG
ACGGCACTCCTGTGGCCAGGAACGTACAAGTGCAGTACGGGGTTTGCTGG
CGTTTACTATGGCTTGCTAGCAGTCGAAGTTTGTCTCTTCTATCGCAGCC
GGCGCATATGGGAAGTAGCAGGCCTGGTCAAGCATGCTTTTTTATTAAAA
ACTATTATTTTGGTATGGGAAGAGCTCCGTGCAGACTCCTCAGTGTTGAA
GGACAAGTCTGACGGAACCCACCATGCGGGTCATTTGGCAGGCATACTGA
CGGGTTGCCTCTTTATGCTTGTAATGCAATACTCCCTCCGTTTCCAAAAC
CTCGCTCGGAAAATATGCAGGCGATGGGCTCTGCCGTTTCCGTTCTTAGA
CGAGACGAGTATCGCGACGATCGCCAAAGAGGGGGATGATACAAGTAAAG
GAATCGTGGACGGCGCTTAG
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Synonyms
Publications