NO11G03500, NO11G03500 (gene) Nannochloropsis oceanica

Overview
NameNO11G03500
Unique NameNO11G03500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1647
Alignment locationchr11:1126611..1128257 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1126611..1128257 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO11G03500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL111nonsL111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR011ncniR011Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03500.1NO11G03500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|676084gene_12007Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03500.1NO11G03500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03500 ID=NO11G03500|Name=NO11G03500|organism=Nannochloropsis oceanica|type=gene|length=1647bp
ATGCCGGAGGGGCATGAGGTGATGCGGGCCATGGTGGGGGACGGCGCGGG
CGATGACTTCAATGTCGGCGTTGATAAGTATAACCTAACTCACCgtgcgc
cctatcctcctatcctatcctaaccccaaacccataagccttcttgtgag
ccaaacagcgatgtgcccatccacttctcctggacaatcttcatcttctg
ttggttgggctggtttttcgatttgcttgatctcggcacgtacaagccaa
atttatgcatctcacccgtctgtccacgctcccaccctccttataccccc
accgccccccattttcccgcacccaccttctttcacttttcctagTACTG
TTGGGTTATGTGAAGGAAGAGGTCGTGGCAGAGTCAGGGATCAACGTGCG
ACACGAGGCCTGGATGCCAGgtgagaagggccacgagtaaggcagggaca
caattctaaattgatgaactcacaacgcccgcgcaggacgcttgtccttt
tttctaaattaaataattaatccacaaaacacggtgaaagtgtctcgtct
ccctccccttcatcgtgctccaaccctcacatcagGGACGGGGGGGGGTC
GTTGCAGGCCTTCTGGCCGACCGGATGGGCAAGCGCGACATCCTGGCAGT
GACCGTTTTAACTATCCCATGGGGAGCCTCATCACGGCCTTGGCACCCAA
CAACGGCGTACTTCTGCTCGgtacttgtggggggatagggggagaggaag
gagggagagctggcagaatgggctgtgggtaggggtgcagaagaaagaaa
tatatgtcaatccacgttctcagcgtcaaggatgctgatcctccccctac
atgtccctccctccctctcttccccttctataacatcacagGAAGTGCAT
GTGCCCCCGTTCTCTTTGTCGTGGTTGCCCGGCCTCTCGACATCCCCCTC
GTATTTGCAGGGGGAGGTGCCCCGAAATCTCGGAAGCGGCGGCTGTTCGT
GAGTGCGGgtatgtccttcatcctgggtgttttcaagctcggcacactct
gaaccatgtacacggagaaggaaggaaggaaggaagggagggagggaggg
agggagggagggagggagggagggaggggagggaaggatgggaaaaggga
gggagaaagggaaggaacgaggttcattggatggccatgtctacaaataa
gccgagagggagcgagcgaaggaccagacgctgcctctactcgggggcct
aatgcgcagaggaagcctttcatttccgatcaccttttcctgtcctccca
tctcactccttacaaccaccgctcctttcccgccctctcccccctctgca
gCTGGTTGCCGGGTTTTTGGACGAGTGAGGTCCACCGGGGCACGGCCGAG
AGCTAAGCGTGGGTGCTCACTGCGCAGTGTGGGCAAGCGATAGGCGGGAA
GGCTGAATTGGAGGGAAGGAGGGGGGAAGGAAAAGAGGGCGAATGAGCGA
AGCAGCGCCAGCTAATGTCAACAAATCCTTACCTTCTCGCAAGCAGCTTT
TCCTTCGGCTTCGTCTCGAATAGCTTCAGTAGTCGTCCATCTGTTTCGCT
TTACCGCCTCCTGGTACGTTCCGTCCCTCCCTCTCCCCCTCCCTCCC
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protein sequence of NO11G03500.1

>NO11G03500.1-protein ID=NO11G03500.1-protein|Name=NO11G03500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MPEGHEVMRAMVGDGAGDDFNVGVDKYNLTHLLLGYVKEEVVAESGINVR
HEAWMPGTGGGRCRPSGRPDGQARHPGSDRFNYPMGSLITALAPNNGVLL
LGSACAPVLFVVVARPLDIPLVFAGGGAPKSRKRRLFVSAAGCRVFGRVR
STGARPRAKRGCSLRSVGKR*
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Synonyms
Publications