NO11G03500.1, NO11G03500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03500.1
Unique NameNO11G03500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length717
Alignment locationchr11:1126611..1128257 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1126611..1128257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO11G03500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03500NO11G03500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03500.1NO11G03500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03500.1.cds1NO11G03500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03500.1.cds2NO11G03500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03500.1.cds3NO11G03500.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03500.1.cds4NO11G03500.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03500.1.cds5NO11G03500.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03500.1 ID=NO11G03500.1|Name=NO11G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=717bp
ATGCCGGAGGGGCATGAGGTGATGCGGGCCATGGTGGGGGACGGCGCGGG
CGATGACTTCAATGTCGGCGTTGATAAGTATAACCTAACTCACCTACTGT
TGGGTTATGTGAAGGAAGAGGTCGTGGCAGAGTCAGGGATCAACGTGCGA
CACGAGGCCTGGATGCCAGGGACGGGGGGGGGTCGTTGCAGGCCTTCTGG
CCGACCGGATGGGCAAGCGCGACATCCTGGCAGTGACCGTTTTAACTATC
CCATGGGGAGCCTCATCACGGCCTTGGCACCCAACAACGGCGTACTTCTG
CTCGGAAGTGCATGTGCCCCCGTTCTCTTTGTCGTGGTTGCCCGGCCTCT
CGACATCCCCCTCGTATTTGCAGGGGGAGGTGCCCCGAAATCTCGGAAGC
GGCGGCTGTTCGTGAGTGCGGCTGGTTGCCGGGTTTTTGGACGAGTGAGG
TCCACCGGGGCACGGCCGAGAGCTAAGCGTGGGTGCTCACTGCGCAGTGT
GGGCAAGCGATAGGCGGGAAGGCTGAATTGGAGGGAAGGAGGGGGGAAGG
AAAAGAGGGCGAATGAGCGAAGCAGCGCCAGCTAATGTCAACAAATCCTT
ACCTTCTCGCAAGCAGCTTTTCCTTCGGCTTCGTCTCGAATAGCTTCAGT
AGTCGTCCATCTGTTTCGCTTTACCGCCTCCTGGTACGTTCCGTCCCTCC
CTCTCCCCCTCCCTCCC
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protein sequence of NO11G03500.1

>NO11G03500.1-protein ID=NO11G03500.1-protein|Name=NO11G03500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MPEGHEVMRAMVGDGAGDDFNVGVDKYNLTHLLLGYVKEEVVAESGINVR
HEAWMPGTGGGRCRPSGRPDGQARHPGSDRFNYPMGSLITALAPNNGVLL
LGSACAPVLFVVVARPLDIPLVFAGGGAPKSRKRRLFVSAAGCRVFGRVR
STGARPRAKRGCSLRSVGKR*
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mRNA from alignment at chr11:1126611..1128257-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03500.1 ID=NO11G03500.1|Name=NO11G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1647bp|location=Sequence derived from alignment at chr11:1126611..1128257- (Nannochloropsis oceanica)
ATGCCGGAGGGGCATGAGGTGATGCGGGCCATGGTGGGGGACGGCGCGGG
CGATGACTTCAATGTCGGCGTTGATAAGTATAACCTAACTCACCGTGCGC
CCTATCCTCCTATCCTATCCTAACCCCAAACCCATAAGCCTTCTTGTGAG
CCAAACAGCGATGTGCCCATCCACTTCTCCTGGACAATCTTCATCTTCTG
TTGGTTGGGCTGGTTTTTCGATTTGCTTGATCTCGGCACGTACAAGCCAA
ATTTATGCATCTCACCCGTCTGTCCACGCTCCCACCCTCCTTATACCCCC
ACCGCCCCCCATTTTCCCGCACCCACCTTCTTTCACTTTTCCTAGTACTG
TTGGGTTATGTGAAGGAAGAGGTCGTGGCAGAGTCAGGGATCAACGTGCG
ACACGAGGCCTGGATGCCAGGTGAGAAGGGCCACGAGTAAGGCAGGGACA
CAATTCTAAATTGATGAACTCACAACGCCCGCGCAGGACGCTTGTCCTTT
TTTCTAAATTAAATAATTAATCCACAAAACACGGTGAAAGTGTCTCGTCT
CCCTCCCCTTCATCGTGCTCCAACCCTCACATCAGGGACGGGGGGGGGTC
GTTGCAGGCCTTCTGGCCGACCGGATGGGCAAGCGCGACATCCTGGCAGT
GACCGTTTTAACTATCCCATGGGGAGCCTCATCACGGCCTTGGCACCCAA
CAACGGCGTACTTCTGCTCGGTACTTGTGGGGGGATAGGGGGAGAGGAAG
GAGGGAGAGCTGGCAGAATGGGCTGTGGGTAGGGGTGCAGAAGAAAGAAA
TATATGTCAATCCACGTTCTCAGCGTCAAGGATGCTGATCCTCCCCCTAC
ATGTCCCTCCCTCCCTCTCTTCCCCTTCTATAACATCACAGGAAGTGCAT
GTGCCCCCGTTCTCTTTGTCGTGGTTGCCCGGCCTCTCGACATCCCCCTC
GTATTTGCAGGGGGAGGTGCCCCGAAATCTCGGAAGCGGCGGCTGTTCGT
GAGTGCGGGTATGTCCTTCATCCTGGGTGTTTTCAAGCTCGGCACACTCT
GAACCATGTACACGGAGAAGGAAGGAAGGAAGGAAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGGAGGGAAGGATGGGAAAAGGGA
GGGAGAAAGGGAAGGAACGAGGTTCATTGGATGGCCATGTCTACAAATAA
GCCGAGAGGGAGCGAGCGAAGGACCAGACGCTGCCTCTACTCGGGGGCCT
AATGCGCAGAGGAAGCCTTTCATTTCCGATCACCTTTTCCTGTCCTCCCA
TCTCACTCCTTACAACCACCGCTCCTTTCCCGCCCTCTCCCCCCTCTGCA
GCTGGTTGCCGGGTTTTTGGACGAGTGAGGTCCACCGGGGCACGGCCGAG
AGCTAAGCGTGGGTGCTCACTGCGCAGTGTGGGCAAGCGATAGGCGGGAA
GGCTGAATTGGAGGGAAGGAGGGGGGAAGGAAAAGAGGGCGAATGAGCGA
AGCAGCGCCAGCTAATGTCAACAAATCCTTACCTTCTCGCAAGCAGCTTT
TCCTTCGGCTTCGTCTCGAATAGCTTCAGTAGTCGTCCATCTGTTTCGCT
TTACCGCCTCCTGGTACGTTCCGTCCCTCCCTCTCCCCCTCCCTCCC
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Coding sequence (CDS) from alignment at chr11:1126611..1128257-

>NO11G03500.1 ID=NO11G03500.1|Name=NO11G03500.1|organism=Nannochloropsis oceanica|type=CDS|length=513bp|location=Sequence derived from alignment at chr11:1126611..1128257- (Nannochloropsis oceanica)
ATGCCGGAGGGGCATGAGGTGATGCGGGCCATGGTGGGGGACGGCGCGGG
CGATGACTTCAATGTCGGCGTTGATAAGTATAACCTAACTCACCTACTGT
TGGGTTATGTGAAGGAAGAGGTCGTGGCAGAGTCAGGGATCAACGTGCGA
CACGAGGCCTGGATGCCAGGGACGGGGGGGGGTCGTTGCAGGCCTTCTGG
CCGACCGGATGGGCAAGCGCGACATCCTGGCAGTGACCGTTTTAACTATC
CCATGGGGAGCCTCATCACGGCCTTGGCACCCAACAACGGCGTACTTCTG
CTCGGAAGTGCATGTGCCCCCGTTCTCTTTGTCGTGGTTGCCCGGCCTCT
CGACATCCCCCTCGTATTTGCAGGGGGAGGTGCCCCGAAATCTCGGAAGC
GGCGGCTGTTCGTGAGTGCGGCTGGTTGCCGGGTTTTTGGACGAGTGAGG
TCCACCGGGGCACGGCCGAGAGCTAAGCGTGGGTGCTCACTGCGCAGTGT
GGGCAAGCGATAG
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Synonyms
Publications