NO11G03420, NO11G03420 (gene) Nannochloropsis oceanica

Overview
NameNO11G03420
Unique NameNO11G03420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1534
Alignment locationchr11:1095199..1096732 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1095199..1096732 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO11G03420 vs. NCBI_GenBank
Match: EWM24851.1 (hypothetical protein Naga_100882g2 [Nannochloropsis gaditana] >EWM24852.1 hypothetical protein Naga_100882g2 [Nannochloropsis gaditana])

HSP 1 Score: 253.8 bits (647), Expect = 7.900e-64
Identity = 158/305 (51.80%), Postives = 183/305 (60.00%), Query Frame = 0 
Query:   62 TFCDTFNGGWAGWECHFSLASGHVLPVPAEDLPEALREWEVEMWGWEGTSYDNVREEEGEKEEKMQMTFIDRKAARFMVEAGCGCENVGKQKSQAHLGPLHLAPHGAGYLATDRLTSSFTRLEVAF------SSXXXXXXXXXXXXXARILIDLHTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDILRVHLERRFTPFLPLDPDEQNDPFKKSIDQTTISRRVVVPCFGDPEAKAAGRQGEGGLGKSGAWVAWEKEGGVLEVGWRPEMSMYGGESCGVEE---MVCRATLNMATGEVKACEW 358
            T  +T  GGWAGWECHFS +SG VLPVPA+DLPEALREWEV +WGWEG +YD VRE+EG  +       I+R+AARFMVEAGCGCENVGKQKS   L PL  A  G GY+  DRLT S  RLE A         XXXXXXXXXXXX AR+++DL                                RD +R++LERRFT  LP       DPFK +IDQT+ISR V VPCFG+PE  AAGR+     G SG WV W ++  VLEVGWRPE++       GVEE   M  R  L     +V  CEW
Sbjct:   62 TLAETVGGGWAGWECHFSFSSGLVLPVPADDLPEALREWEVAVWGWEGFAYDAVREDEGTVD-------IERRAARFMVEAGCGCENVGKQKSHQRLQPLAWARGGLGYVTADRLTDSLLRLEAALXXXXXXXXXXXXXXXXXXXXRARVILDLR----------CPPVPPSTPMSSPQGAFVCSVRDPVRLYLERRFTSALP-----ATDPFKAAIDQTSISRHVGVPCFGEPERGAAGRE----WGGSGVWVRWREDREVLEVGWRPEVARGQEGEAGVEEKKGMAWRIRLGQEECKVVDCEW 340
The following BLAST results are available for this feature:
BLAST of NO11G03420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24851.17.900e-6451.80hypothetical protein Naga_100882g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR019ncniR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03420.1NO11G03420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|617606gene_12281Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100882g2gene5635Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03420.1NO11G03420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03420 ID=NO11G03420|Name=NO11G03420|organism=Nannochloropsis oceanica|type=gene|length=1534bp
ATGACGTCCTTCCCTGCACTCCTCCTGCTATTGCTGCCGTGCCTGGCCGC
ATCCTTCTTGATACTTCCCCGGTCGGCCACTTCCTCGTCTGGCCAGTGCC
CGGCTGCCCGCGTCTACAGAACAACATGTACGACAAGAAGACGGGCCGCG
ACCACAAGACGAGCAGCAACACCGAGGCCATCCACATTCTGTGATACTTT
TAACGGTGGCTGGGCAGgtgagtcgccacctctttattttcgcgtgagac
tgtcctgcacattccagcttcctcccctccaagctgcggacgtttttttc
cctcattgagacggcaatgccctcccttcattcagacatctctcatccct
cctatgtatcctcctctttcttcctcccttagGCTGGGAATGTCACTTCT
CCCTCGCCTCCGGTCACGTGTTGCCAGTGCCCGCCGAGGATCTGCCGGAG
GCCCTGCGGGAGTGGGAGGTTGAGATGTGGGGGTGGGAAGGAACATCCTA
CGACAATGTGAGgtgagtgataaaggaggagggagggagggagaaagatg
acgccacacgttgactgggccctcattgactcacttgggatgtaatttgc
gtacgtcatacaccaacatacatacaagGGAAGAGGAGGGGGAAAAAGAG
GAGAAAATGCAGATGACCTTCATCGACAGGAAGGCTGCACGCTTCATGGT
CGAGGCTGGATGTGGCTGCGAGAATGTGGGAAAACAAgtacgtatgtgtg
atttcaccctggcctggtcttacgccgtcttgcccatcaccatccccctt
cctcccctcctgtcccttcctcccctcctctccttcccctcacctcccac
aactccattcccatcctaaacaactctcatatccacaccctatattttca
gAAAAGTCAAGCCCACCTCGGTCCCCTCCATCTCGCGCCGCATGGAGCCG
GCTACCTTGCGACTGACCGATTGACCAGTTCCTTCACCCGCCTTGAAGTT
GCATTCTCCTCCTCCAACTCCTCCTCTTCCTCCCCCACCGAACAAACCCG
TGCTCGGATCCTCATTGATTTGCACACCACATCCTTTCCCTCATCATCTT
CTGCCTCCTCCTCTTCTTCCTCCTCCTCCTCCCCTTCCTCCCCACCCGCA
CAACCCACTACCACCCCTCGAGATATACTCCGCGTCCACCTGGAACGGCG
CTTCACTCCCTTCCTCCCCCTCGACCCAGACGAGCAGAATGATCCTTTCA
AGAAATCAATCGATCAGACCACTATATCGCGACGCGTGGTCGTGCCATGC
TTTGGAGACCCCGAGGCGAAGGCGGCAGGGAGGCAGGGGGAGGGAGGGCT
GGGAAAGAGTGGGGCATGGGTGGCGTGGGAGAAAGAGGGGGGGGTCTTGG
AAGTGGGTTGGAGACCGGAAATGTCCATGTATGGGGGAGAGAGTTGTGGG
GTGGAAGAGATGGTGTGTCGGGCAACGCTGAACATGGCGACGGGAGAAGT
CAAAGCGTGCGAGTGGGGCAAGGGAACGAAATGA
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protein sequence of NO11G03420.1

>NO11G03420.1-protein ID=NO11G03420.1-protein|Name=NO11G03420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MTSFPALLLLLLPCLAASFLILPRSATSSSGQCPAARVYRTTCTTRRRAA
TTRRAATPRPSTFCDTFNGGWAGWECHFSLASGHVLPVPAEDLPEALREW
EVEMWGWEGTSYDNVREEEGEKEEKMQMTFIDRKAARFMVEAGCGCENVG
KQKSQAHLGPLHLAPHGAGYLATDRLTSSFTRLEVAFSSSNSSSSSPTEQ
TRARILIDLHTTSFPSSSSASSSSSSSSSPSSPPAQPTTTPRDILRVHLE
RRFTPFLPLDPDEQNDPFKKSIDQTTISRRVVVPCFGDPEAKAAGRQGEG
GLGKSGAWVAWEKEGGVLEVGWRPEMSMYGGESCGVEEMVCRATLNMATG
EVKACEWGKGTK*
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Synonyms
Publications