NO11G03420.1, NO11G03420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03420.1
Unique NameNO11G03420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1089
Alignment locationchr11:1095199..1096732 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1095199..1096732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO11G03420.1 vs.
Match: EWM24851.1 (hypothetical protein Naga_100882g2 [Nannochloropsis gaditana]; EWM24852.1 hypothetical protein Naga_100882g2 [Nannochloropsis gaditana])

HSP 1 Score: 268.9 bits (686), Expect = 2.400e-68
Identity = 173/360 (48.06%), Postives = 213/360 (59.17%), Query Frame = 0 
Query:    7 LLLLLLPCLAASFLILPRSATSSSGQCPAARVYRTTCTTRRRAATTRRAATPRPSTFCDTFNGGWAGWECHFSLASGHVLPVPAEDLPEALREWEVEMWGWEGTSYDNVREEEGEKEEKMQMTFIDRKAARFMVEAGCGCENVGKQKSQAHLGPLHLAPHGAGYLATDRLTSSFTRLEVAFSSSNSS--SSSPTEQT----RARILIDLHTTSFPSSSSASSSSSSSSSPSSPPAQPTTTPRDILRVHLERRFTPFLPLDPDEQNDPFKKSIDQTTISRRVVVPCFGDPEAKAAGRQGEGGLGKSGAWVAWEKEGGVLEVGWRPEMSMYGGESCGVEE---MVCRATLNMATGEVKACEW 358
            LL+LL   LA +F   P +++ S+    A  + +T     ++     RA T +  T  +T  GGWAGWECHFS +SG VLPVPA+DLPEALREWEV +WGWEG +YD VRE+EG  +       I+R+AARFMVEAGCGCENVGKQKS   L PL  A  G GY+  DRLT S  RLE A SS  SS  SS+P+       RAR+++DL     P S+            SSP      + RD +R++LERRFT  LP       DPFK +IDQT+ISR V VPCFG+PE  AAGR+     G SG WV W ++  VLEVGWRPE++       GVEE   M  R  L     +V  CEW
Sbjct:   11 LLVLLRLLLAPAFAPAPPTSSPSNH---AKAIVKTASRNNKQLIQPIRAVT-QTGTLAETVGGGWAGWECHFSFSSGLVLPVPADDLPEALREWEVAVWGWEGFAYDAVREDEGTVD-------IERRAARFMVEAGCGCENVGKQKSHQRLQPLAWARGGLGYVTADRLTDSLLRLEAALSSPPSSFPSSTPSASAPAARRARVILDLRCPPVPPSTPM----------SSPQGAFVCSVRDPVRLYLERRFTSALP-----ATDPFKAAIDQTSISRHVGVPCFGEPERGAAGRE----WGGSGVWVRWREDREVLEVGWRPEVARGQEGEAGVEEKKGMAWRIRLGQEECKVVDCEW 340
The following BLAST results are available for this feature:
BLAST of NO11G03420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24851.12.400e-6848.06hypothetical protein Naga_100882g2 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03420NO11G03420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03420.1NO11G03420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03420.1.cds1NO11G03420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03420.1.cds2NO11G03420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03420.1.cds3NO11G03420.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03420.1.cds4NO11G03420.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03420.1 ID=NO11G03420.1|Name=NO11G03420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1089bp
ATGACGTCCTTCCCTGCACTCCTCCTGCTATTGCTGCCGTGCCTGGCCGC
ATCCTTCTTGATACTTCCCCGGTCGGCCACTTCCTCGTCTGGCCAGTGCC
CGGCTGCCCGCGTCTACAGAACAACATGTACGACAAGAAGACGGGCCGCG
ACCACAAGACGAGCAGCAACACCGAGGCCATCCACATTCTGTGATACTTT
TAACGGTGGCTGGGCAGGCTGGGAATGTCACTTCTCCCTCGCCTCCGGTC
ACGTGTTGCCAGTGCCCGCCGAGGATCTGCCGGAGGCCCTGCGGGAGTGG
GAGGTTGAGATGTGGGGGTGGGAAGGAACATCCTACGACAATGTGAGGGA
AGAGGAGGGGGAAAAAGAGGAGAAAATGCAGATGACCTTCATCGACAGGA
AGGCTGCACGCTTCATGGTCGAGGCTGGATGTGGCTGCGAGAATGTGGGA
AAACAAAAAAGTCAAGCCCACCTCGGTCCCCTCCATCTCGCGCCGCATGG
AGCCGGCTACCTTGCGACTGACCGATTGACCAGTTCCTTCACCCGCCTTG
AAGTTGCATTCTCCTCCTCCAACTCCTCCTCTTCCTCCCCCACCGAACAA
ACCCGTGCTCGGATCCTCATTGATTTGCACACCACATCCTTTCCCTCATC
ATCTTCTGCCTCCTCCTCTTCTTCCTCCTCCTCCTCCCCTTCCTCCCCAC
CCGCACAACCCACTACCACCCCTCGAGATATACTCCGCGTCCACCTGGAA
CGGCGCTTCACTCCCTTCCTCCCCCTCGACCCAGACGAGCAGAATGATCC
TTTCAAGAAATCAATCGATCAGACCACTATATCGCGACGCGTGGTCGTGC
CATGCTTTGGAGACCCCGAGGCGAAGGCGGCAGGGAGGCAGGGGGAGGGA
GGGCTGGGAAAGAGTGGGGCATGGGTGGCGTGGGAGAAAGAGGGGGGGGT
CTTGGAAGTGGGTTGGAGACCGGAAATGTCCATGTATGGGGGAGAGAGTT
GTGGGGTGGAAGAGATGGTGTGTCGGGCAACGCTGAACATGGCGACGGGA
GAAGTCAAAGCGTGCGAGTGGGGCAAGGGAACGAAATGA
back to top

protein sequence of NO11G03420.1

>NO11G03420.1-protein ID=NO11G03420.1-protein|Name=NO11G03420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MTSFPALLLLLLPCLAASFLILPRSATSSSGQCPAARVYRTTCTTRRRAA
TTRRAATPRPSTFCDTFNGGWAGWECHFSLASGHVLPVPAEDLPEALREW
EVEMWGWEGTSYDNVREEEGEKEEKMQMTFIDRKAARFMVEAGCGCENVG
KQKSQAHLGPLHLAPHGAGYLATDRLTSSFTRLEVAFSSSNSSSSSPTEQ
TRARILIDLHTTSFPSSSSASSSSSSSSSPSSPPAQPTTTPRDILRVHLE
RRFTPFLPLDPDEQNDPFKKSIDQTTISRRVVVPCFGDPEAKAAGRQGEG
GLGKSGAWVAWEKEGGVLEVGWRPEMSMYGGESCGVEEMVCRATLNMATG
EVKACEWGKGTK*
back to top

mRNA from alignment at chr11:1095199..1096732-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03420.1 ID=NO11G03420.1|Name=NO11G03420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp|location=Sequence derived from alignment at chr11:1095199..1096732- (Nannochloropsis oceanica)
ATGACGTCCTTCCCTGCACTCCTCCTGCTATTGCTGCCGTGCCTGGCCGC
ATCCTTCTTGATACTTCCCCGGTCGGCCACTTCCTCGTCTGGCCAGTGCC
CGGCTGCCCGCGTCTACAGAACAACATGTACGACAAGAAGACGGGCCGCG
ACCACAAGACGAGCAGCAACACCGAGGCCATCCACATTCTGTGATACTTT
TAACGGTGGCTGGGCAGGTGAGTCGCCACCTCTTTATTTTCGCGTGAGAC
TGTCCTGCACATTCCAGCTTCCTCCCCTCCAAGCTGCGGACGTTTTTTTC
CCTCATTGAGACGGCAATGCCCTCCCTTCATTCAGACATCTCTCATCCCT
CCTATGTATCCTCCTCTTTCTTCCTCCCTTAGGCTGGGAATGTCACTTCT
CCCTCGCCTCCGGTCACGTGTTGCCAGTGCCCGCCGAGGATCTGCCGGAG
GCCCTGCGGGAGTGGGAGGTTGAGATGTGGGGGTGGGAAGGAACATCCTA
CGACAATGTGAGGTGAGTGATAAAGGAGGAGGGAGGGAGGGAGAAAGATG
ACGCCACACGTTGACTGGGCCCTCATTGACTCACTTGGGATGTAATTTGC
GTACGTCATACACCAACATACATACAAGGGAAGAGGAGGGGGAAAAAGAG
GAGAAAATGCAGATGACCTTCATCGACAGGAAGGCTGCACGCTTCATGGT
CGAGGCTGGATGTGGCTGCGAGAATGTGGGAAAACAAGTACGTATGTGTG
ATTTCACCCTGGCCTGGTCTTACGCCGTCTTGCCCATCACCATCCCCCTT
CCTCCCCTCCTGTCCCTTCCTCCCCTCCTCTCCTTCCCCTCACCTCCCAC
AACTCCATTCCCATCCTAAACAACTCTCATATCCACACCCTATATTTTCA
GAAAAGTCAAGCCCACCTCGGTCCCCTCCATCTCGCGCCGCATGGAGCCG
GCTACCTTGCGACTGACCGATTGACCAGTTCCTTCACCCGCCTTGAAGTT
GCATTCTCCTCCTCCAACTCCTCCTCTTCCTCCCCCACCGAACAAACCCG
TGCTCGGATCCTCATTGATTTGCACACCACATCCTTTCCCTCATCATCTT
CTGCCTCCTCCTCTTCTTCCTCCTCCTCCTCCCCTTCCTCCCCACCCGCA
CAACCCACTACCACCCCTCGAGATATACTCCGCGTCCACCTGGAACGGCG
CTTCACTCCCTTCCTCCCCCTCGACCCAGACGAGCAGAATGATCCTTTCA
AGAAATCAATCGATCAGACCACTATATCGCGACGCGTGGTCGTGCCATGC
TTTGGAGACCCCGAGGCGAAGGCGGCAGGGAGGCAGGGGGAGGGAGGGCT
GGGAAAGAGTGGGGCATGGGTGGCGTGGGAGAAAGAGGGGGGGGTCTTGG
AAGTGGGTTGGAGACCGGAAATGTCCATGTATGGGGGAGAGAGTTGTGGG
GTGGAAGAGATGGTGTGTCGGGCAACGCTGAACATGGCGACGGGAGAAGT
CAAAGCGTGCGAGTGGGGCAAGGGAACGAAATGA
back to top

Coding sequence (CDS) from alignment at chr11:1095199..1096732-

>NO11G03420.1 ID=NO11G03420.1|Name=NO11G03420.1|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at chr11:1095199..1096732- (Nannochloropsis oceanica)
ATGACGTCCTTCCCTGCACTCCTCCTGCTATTGCTGCCGTGCCTGGCCGC
ATCCTTCTTGATACTTCCCCGGTCGGCCACTTCCTCGTCTGGCCAGTGCC
CGGCTGCCCGCGTCTACAGAACAACATGTACGACAAGAAGACGGGCCGCG
ACCACAAGACGAGCAGCAACACCGAGGCCATCCACATTCTGTGATACTTT
TAACGGTGGCTGGGCAGGCTGGGAATGTCACTTCTCCCTCGCCTCCGGTC
ACGTGTTGCCAGTGCCCGCCGAGGATCTGCCGGAGGCCCTGCGGGAGTGG
GAGGTTGAGATGTGGGGGTGGGAAGGAACATCCTACGACAATGTGAGGGA
AGAGGAGGGGGAAAAAGAGGAGAAAATGCAGATGACCTTCATCGACAGGA
AGGCTGCACGCTTCATGGTCGAGGCTGGATGTGGCTGCGAGAATGTGGGA
AAACAAAAAAGTCAAGCCCACCTCGGTCCCCTCCATCTCGCGCCGCATGG
AGCCGGCTACCTTGCGACTGACCGATTGACCAGTTCCTTCACCCGCCTTG
AAGTTGCATTCTCCTCCTCCAACTCCTCCTCTTCCTCCCCCACCGAACAA
ACCCGTGCTCGGATCCTCATTGATTTGCACACCACATCCTTTCCCTCATC
ATCTTCTGCCTCCTCCTCTTCTTCCTCCTCCTCCTCCCCTTCCTCCCCAC
CCGCACAACCCACTACCACCCCTCGAGATATACTCCGCGTCCACCTGGAA
CGGCGCTTCACTCCCTTCCTCCCCCTCGACCCAGACGAGCAGAATGATCC
TTTCAAGAAATCAATCGATCAGACCACTATATCGCGACGCGTGGTCGTGC
CATGCTTTGGAGACCCCGAGGCGAAGGCGGCAGGGAGGCAGGGGGAGGGA
GGGCTGGGAAAGAGTGGGGCATGGGTGGCGTGGGAGAAAGAGGGGGGGGT
CTTGGAAGTGGGTTGGAGACCGGAAATGTCCATGTATGGGGGAGAGAGTT
GTGGGGTGGAAGAGATGGTGTGTCGGGCAACGCTGAACATGGCGACGGGA
GAAGTCAAAGCGTGCGAGTGGGGCAAGGGAACGAAATGA
back to top
Synonyms
Publications