NO11G02980, NO11G02980 (gene) Nannochloropsis oceanica

Overview
NameNO11G02980
Unique NameNO11G02980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1610
Alignment locationchr11:936900..938509 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:936900..938509 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO11G02980 vs. NCBI_GenBank
Match: EWM24925.1 (hypothetical protein Naga_100092g11 [Nannochloropsis gaditana])

HSP 1 Score: 185.3 bits (469), Expect = 2.000e-43
Identity = 104/174 (59.77%), Postives = 127/174 (72.99%), Query Frame = 0 
Query:   44 AAVIPVIKGGTMARDAQATERVVLPVKNGKLATDE--DEEKDSPLAFSSAKGVPLRFPLHKSQEQALSELQEVVVRIGGRLSKARGGSRSDVLRAAFQSND-DDLYFRFGGDGGSSGYSSVLQASVGRDVDNMRLMNALADGLASKGWLAAGFPLSCDPAMGQY--YSQEFKCT 213
            A +IPV+KGG +A   +A      PVK  K  +DE  DEEK +PLAFS+  GVPLR+PLHKSQ +A  ELQ+VV R+GGRL+  R G+++ + RA F  +   +L+F FGGDGGSSGYS VLQA VG  VD+MRL+NALADGLASKGWL AGFPLSCDPAM QY  +  E +CT
Sbjct:   76 AGIIPVVKGGAVASKIKAEHSA--PVKTNKKHSDEKDDEEKSTPLAFST--GVPLRYPLHKSQYEARRELQDVVARVGGRLTDFR-GTKAGLFRATFDLHRLQELHFEFGGDGGSSGYSRVLQAHVGAGVDDMRLINALADGLASKGWLTAGFPLSCDPAMAQYLRHRNEGRCT 244
The following BLAST results are available for this feature:
BLAST of NO11G02980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24925.12.000e-4359.77hypothetical protein Naga_100092g11 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL113nonsL113Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR022ngnoR022Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001962NSK001962Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02980.2NO11G02980.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G02980.1NO11G02980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100092g11gene5576Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02980.2NO11G02980.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G02980.1NO11G02980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02980 ID=NO11G02980|Name=NO11G02980|organism=Nannochloropsis oceanica|type=gene|length=1610bp
CGGGCCATGTTGATGCAAACTCTCTTCGGCGAGTAAGGCTTAACATCAAC
AACGACATACCACCTCTATCTTCTGGACAAGAGTGTACGGTGATGCCATC
CTTGAGGCGTGTGTGTTTTACCTGAAGGGCGTCGATCTCTTGGACCAGAA
GGATTGCGGCCAGGAGACCCACGGGGCCCGCCCCCACAATAATGAAGTGC
CGGTCTTCGGGATGCAACTTCTGGCCTGTTGTCTCGCCCGACGTCGTCAT
GGCGTGCGTTTGTGTGTTTGCACCGGGCCTCTATGGATGTGTGTGCCGGG
TATGGACGAGCGGAGACGGGATGAAGAGCGTGAGAAGCTCAATGAATGGA
CTTGCAGGAAGCTTACTGCTGATTTGTGAGAAGGGGCTTGCAGGCTGGTG
GTGTCCAAACCGGCTCTTGAGCTCACAAATCGTGGCGACATCCTCATGCA
CACAAGACACAGGATACACCCGCAAATAAATATCATGGCCAGCCTCACGT
TGCTCCTGTCATCCAGGCTTTTGACCTCACTTTTCCTATGCCTTTTGATG
GCTGCCTTTTGGAGCACGACGCTCGCCTTTGTCCCTCCTTGCTGTCACAG
CAGCAGCGGCCGCCGCCAAGTGAAGGCCACGACGACGCGCATGATGGCGG
AGCGATTCTACTCCAAATGGAGCCGGGCGGATTTCGTGCTCAAGAGCGCA
CTGGCTGCGGTACGTTGAAGTGTGGAAAGCAAGAAGGATGAAGGAAGCGA
AACAGGAAGGGGGAGGAAAAGGGAAGGGGGAGGAAAGTATGGGAAAGTTA
AATTACGCAGTACGTAGGCATCAATCATCTCACCCTTCCTCCCTCCTCTG
CATACCCTCTCTACAGGCGGCAGTTATTCCAGTGATCAAGGGCGGGACCA
TGGCGCGCGATGCCCAGGCCACCGAGCGGGTAGTGTTGCCCGTCAAgtac
gtggaaggaataagaggagggtggtaggaaaagcttcgacgagatagatt
ccttcattatacttgttcttctaatacagcaaagaaaattgtgtcagttt
gtcatactccttttctttttcctcctattgacagAAATGGCAAACTTGCC
ACCGACGAAGACGAGGAAAAAGACAGCCCCCTCGCCTTCTCCTCTGCCAA
GGGCGTGCCTCTGCGTTTCCCCCTTCACAAAAGCCAAGAGCAAGCCCTGT
CTGAGCTTCAAGAAGTGGTCGTCCGCATCGGAGGCCGCTTGTCTAAGGCC
CGTGGGGGTTCTCGAAGCGATGTGCTCCGTGCCGCGTTCCAGTCGAATGA
CGACGATTTGTATTTCCGATTTGGCGGGGACGGAGGTAGCAGTGGGTATA
GCAGTGTGCTGCAGGCGAGCGTGGGTAGAGATGTGGATAATATGAGATTG
ATGAATGCATTGGCGGATGGATTGGCATCTAAGGGGTGGTTGGCGGCGGG
CTTTCCCTTATCATGTGATCCTGCGATGGGCCAGTATTATTCCCAGGAGT
TTAAGTGCACGGTGTAGTGATGAGCCGTGAGGGCAAGAAATTAATTGACG
ACATGAAGGGGAAATGAAATTGTATGCTCTCAAGTCCTTCTCGCTTCGTT
TTGTTATTCC
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protein sequence of NO11G02980.2

>NO11G02980.2-protein ID=NO11G02980.2-protein|Name=NO11G02980.2|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MKEAKQEGGGKGKGEESMGKLNYAVRRHQSSHPSSLLCIPSLQAAVIPVI
KGGTMARDAQATERVVLPVKNGKLATDEDEEKDSPLAFSSAKGVPLRFPL
HKSQEQALSELQEVVVRIGGRLSKARGGSRSDVLRAAFQSNDDDLYFRFG
GDGGSSGYSSVLQASVGRDVDNMRLMNALADGLASKGWLAAGFPLSCDPA
MGQYYSQEFKCTV*
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protein sequence of NO11G02980.1

>NO11G02980.1-protein ID=NO11G02980.1-protein|Name=NO11G02980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MHTRHRIHPQINIMASLTLLLSSRLLTSLFLCLLMAAFWSTTLAFVPPCC
HSSSGRRQVKATTTRMMAERFYSKWSRADFVLKSALAAAAVIPVIKGGTM
ARDAQATERVVLPVKNGKLATDEDEEKDSPLAFSSAKGVPLRFPLHKSQE
QALSELQEVVVRIGGRLSKARGGSRSDVLRAAFQSNDDDLYFRFGGDGGS
SGYSSVLQASVGRDVDNMRLMNALADGLASKGWLAAGFPLSCDPAMGQYY
SQEFKCTV*
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Synonyms
Publications