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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:936900..938509 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G02980.2 vs.
Match: EWM24925.1 (hypothetical protein Naga_100092g11 [Nannochloropsis gaditana]) HSP 1 Score: 185.3 bits (469), Expect = 2.000e-43 Identity = 104/174 (59.77%), Postives = 127/174 (72.99%), Query Frame = 0
Query: 44 AAVIPVIKGGTMARDAQATERVVLPVKNGKLATDE--DEEKDSPLAFSSAKGVPLRFPLHKSQEQALSELQEVVVRIGGRLSKARGGSRSDVLRAAFQSND-DDLYFRFGGDGGSSGYSSVLQASVGRDVDNMRLMNALADGLASKGWLAAGFPLSCDPAMGQY--YSQEFKCT 213
A +IPV+KGG +A +A PVK K +DE DEEK +PLAFS+ GVPLR+PLHKSQ +A ELQ+VV R+GGRL+ RG +++ + RA F + +L+F FGGDGGSSGYS VLQA VG VD+MRL+NALADGLASKGWL AGFPLSCDPAM QY + E +CT
Sbjct: 76 AGIIPVVKGGAVASKIKAEHSA--PVKTNKKHSDEKDDEEKSTPLAFST--GVPLRYPLHKSQYEARRELQDVVARVGGRLTDFRG-TKAGLFRATFDLHRLQELHFEFGGDGGSSGYSRVLQAHVGAGVDDMRLINALADGLASKGWLTAGFPLSCDPAMAQYLRHRNEGRCT 244
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G02980.2 ID=NO11G02980.2|Name=NO11G02980.2|organism=Nannochloropsis oceanica|type=mRNA|length=1472bp CGGGCCATGTTGATGCAAACTCTCTTCGGCGAGTAAGGCTTAACATCAAC AACGACATACCACCTCTATCTTCTGGACAAGAGTGTACGGTGATGCCATC CTTGAGGCGTGTGTGTTTTACCTGAAGGGCGTCGATCTCTTGGACCAGAA GGATTGCGGCCAGGAGACCCACGGGGCCCGCCCCCACAATAATGAAGTGC CGGTCTTCGGGATGCAACTTCTGGCCTGTTGTCTCGCCCGACGTCGTCAT GGCGTGCGTTTGTGTGTTTGCACCGGGCCTCTATGGATGTGTGTGCCGGG TATGGACGAGCGGAGACGGGATGAAGAGCGTGAGAAGCTCAATGAATGGA CTTGCAGGAAGCTTACTGCTGATTTGTGAGAAGGGGCTTGCAGGCTGGTG GTGTCCAAACCGGCTCTTGAGCTCACAAATCGTGGCGACATCCTCATGCA CACAAGACACAGGATACACCCGCAAATAAATATCATGGCCAGCCTCACGT TGCTCCTGTCATCCAGGCTTTTGACCTCACTTTTCCTATGCCTTTTGATG GCTGCCTTTTGGAGCACGACGCTCGCCTTTGTCCCTCCTTGCTGTCACAG CAGCAGCGGCCGCCGCCAAGTGAAGGCCACGACGACGCGCATGATGGCGG AGCGATTCTACTCCAAATGGAGCCGGGCGGATTTCGTGCTCAAGAGCGCA CTGGCTGCGGTACGTTGAAGTGTGGAAAGCAAGAAGGATGAAGGAAGCGA AACAGGAAGGGGGAGGAAAAGGGAAGGGGGAGGAAAGTATGGGAAAGTTA AATTACGCAGTACGTAGGCATCAATCATCTCACCCTTCCTCCCTCCTCTG CATACCCTCTCTACAGGCGGCAGTTATTCCAGTGATCAAGGGCGGGACCA TGGCGCGCGATGCCCAGGCCACCGAGCGGGTAGTGTTGCCCGTCAAAAAT GGCAAACTTGCCACCGACGAAGACGAGGAAAAAGACAGCCCCCTCGCCTT CTCCTCTGCCAAGGGCGTGCCTCTGCGTTTCCCCCTTCACAAAAGCCAAG AGCAAGCCCTGTCTGAGCTTCAAGAAGTGGTCGTCCGCATCGGAGGCCGC TTGTCTAAGGCCCGTGGGGGTTCTCGAAGCGATGTGCTCCGTGCCGCGTT CCAGTCGAATGACGACGATTTGTATTTCCGATTTGGCGGGGACGGAGGTA GCAGTGGGTATAGCAGTGTGCTGCAGGCGAGCGTGGGTAGAGATGTGGAT AATATGAGATTGATGAATGCATTGGCGGATGGATTGGCATCTAAGGGGTG GTTGGCGGCGGGCTTTCCCTTATCATGTGATCCTGCGATGGGCCAGTATT ATTCCCAGGAGTTTAAGTGCACGGTGTAGTGATGAGCCGTGAGGGCAAGA AATTAATTGACGACATGAAGGGGAAATGAAATTGTATGCTCTCAAGTCCT TCTCGCTTCGTTTTGTTATTCC back to topprotein sequence of NO11G02980.2 >NO11G02980.2-protein ID=NO11G02980.2-protein|Name=NO11G02980.2|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp MKEAKQEGGGKGKGEESMGKLNYAVRRHQSSHPSSLLCIPSLQAAVIPVI KGGTMARDAQATERVVLPVKNGKLATDEDEEKDSPLAFSSAKGVPLRFPL HKSQEQALSELQEVVVRIGGRLSKARGGSRSDVLRAAFQSNDDDLYFRFG GDGGSSGYSSVLQASVGRDVDNMRLMNALADGLASKGWLAAGFPLSCDPA MGQYYSQEFKCTV* back to topmRNA from alignment at chr11:936900..938509- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G02980.2 ID=NO11G02980.2|Name=NO11G02980.2|organism=Nannochloropsis oceanica|type=mRNA|length=1610bp|location=Sequence derived from alignment at chr11:936900..938509- (Nannochloropsis oceanica) CGGGCCATGTTGATGCAAACTCTCTTCGGCGAGTAAGGCTTAACATCAAC
AACGACATACCACCTCTATCTTCTGGACAAGAGTGTACGGTGATGCCATC
CTTGAGGCGTGTGTGTTTTACCTGAAGGGCGTCGATCTCTTGGACCAGAA
GGATTGCGGCCAGGAGACCCACGGGGCCCGCCCCCACAATAATGAAGTGC
CGGTCTTCGGGATGCAACTTCTGGCCTGTTGTCTCGCCCGACGTCGTCAT
GGCGTGCGTTTGTGTGTTTGCACCGGGCCTCTATGGATGTGTGTGCCGGG
TATGGACGAGCGGAGACGGGATGAAGAGCGTGAGAAGCTCAATGAATGGA
CTTGCAGGAAGCTTACTGCTGATTTGTGAGAAGGGGCTTGCAGGCTGGTG
GTGTCCAAACCGGCTCTTGAGCTCACAAATCGTGGCGACATCCTCATGCA
CACAAGACACAGGATACACCCGCAAATAAATATCATGGCCAGCCTCACGT
TGCTCCTGTCATCCAGGCTTTTGACCTCACTTTTCCTATGCCTTTTGATG
GCTGCCTTTTGGAGCACGACGCTCGCCTTTGTCCCTCCTTGCTGTCACAG
CAGCAGCGGCCGCCGCCAAGTGAAGGCCACGACGACGCGCATGATGGCGG
AGCGATTCTACTCCAAATGGAGCCGGGCGGATTTCGTGCTCAAGAGCGCA
CTGGCTGCGGTACGTTGAAGTGTGGAAAGCAAGAAGGATGAAGGAAGCGA
AACAGGAAGGGGGAGGAAAAGGGAAGGGGGAGGAAAGTATGGGAAAGTTA
AATTACGCAGTACGTAGGCATCAATCATCTCACCCTTCCTCCCTCCTCTG
CATACCCTCTCTACAGGCGGCAGTTATTCCAGTGATCAAGGGCGGGACCA
TGGCGCGCGATGCCCAGGCCACCGAGCGGGTAGTGTTGCCCGTCAAGTAC
GTGGAAGGAATAAGAGGAGGGTGGTAGGAAAAGCTTCGACGAGATAGATT
CCTTCATTATACTTGTTCTTCTAATACAGCAAAGAAAATTGTGTCAGTTT
GTCATACTCCTTTTCTTTTTCCTCCTATTGACAGAAATGGCAAACTTGCC
ACCGACGAAGACGAGGAAAAAGACAGCCCCCTCGCCTTCTCCTCTGCCAA
GGGCGTGCCTCTGCGTTTCCCCCTTCACAAAAGCCAAGAGCAAGCCCTGT
CTGAGCTTCAAGAAGTGGTCGTCCGCATCGGAGGCCGCTTGTCTAAGGCC
CGTGGGGGTTCTCGAAGCGATGTGCTCCGTGCCGCGTTCCAGTCGAATGA
CGACGATTTGTATTTCCGATTTGGCGGGGACGGAGGTAGCAGTGGGTATA
GCAGTGTGCTGCAGGCGAGCGTGGGTAGAGATGTGGATAATATGAGATTG
ATGAATGCATTGGCGGATGGATTGGCATCTAAGGGGTGGTTGGCGGCGGG
CTTTCCCTTATCATGTGATCCTGCGATGGGCCAGTATTATTCCCAGGAGT
TTAAGTGCACGGTGTAGTGATGAGCCGTGAGGGCAAGAAATTAATTGACG
ACATGAAGGGGAAATGAAATTGTATGCTCTCAAGTCCTTCTCGCTTCGTT
TTGTTATTCC back to topCoding sequence (CDS) from alignment at chr11:936900..938509- >NO11G02980.2 ID=NO11G02980.2|Name=NO11G02980.2|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at chr11:936900..938509- (Nannochloropsis oceanica) ATGAAGGAAGCGAAACAGGAAGGGGGAGGAAAAGGGAAGGGGGAGGAAAG TATGGGAAAGTTAAATTACGCAGTACGTAGGCATCAATCATCTCACCCTT CCTCCCTCCTCTGCATACCCTCTCTACAGGCGGCAGTTATTCCAGTGATC AAGGGCGGGACCATGGCGCGCGATGCCCAGGCCACCGAGCGGGTAGTGTT GCCCGTCAAAAATGGCAAACTTGCCACCGACGAAGACGAGGAAAAAGACA GCCCCCTCGCCTTCTCCTCTGCCAAGGGCGTGCCTCTGCGTTTCCCCCTT CACAAAAGCCAAGAGCAAGCCCTGTCTGAGCTTCAAGAAGTGGTCGTCCG CATCGGAGGCCGCTTGTCTAAGGCCCGTGGGGGTTCTCGAAGCGATGTGC TCCGTGCCGCGTTCCAGTCGAATGACGACGATTTGTATTTCCGATTTGGC GGGGACGGAGGTAGCAGTGGGTATAGCAGTGTGCTGCAGGCGAGCGTGGG TAGAGATGTGGATAATATGAGATTGATGAATGCATTGGCGGATGGATTGG CATCTAAGGGGTGGTTGGCGGCGGGCTTTCCCTTATCATGTGATCCTGCG ATGGGCCAGTATTATTCCCAGGAGTTTAAGTGCACGGTGTAG back to top
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