NO11G02890, NO11G02890 (gene) Nannochloropsis oceanica

Overview
NameNO11G02890
Unique NameNO11G02890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length654
Alignment locationchr11:907947..908600 -

Link to JBrowse

Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 2-alpha kinase 4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:907947..908600 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0008135translation factor activity, RNA binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Homology
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BLAST of NO11G02890 vs. NCBI_GenBank
Match: EWM24926.1 (eukaryotic translation initiation factor 2-alpha kinase 4 [Nannochloropsis gaditana])

HSP 1 Score: 150.6 bits (379), Expect = 5.600e-33
Identity = 74/107 (69.16%), Postives = 91/107 (85.05%), Query Frame = 0 
Query:   54 VILSCLDTKHTQHAAG-DRRKAFKEMAALERRVRAHIQGMVGHPFAGSGPQREPVVVLAMEVPYMVIRMFCTAYLRLGAEEALRDPWVSQQGGAHKRSMKLLGEALE 160
            V LS LD+K +Q+A G DRRKA+KEM ALERRVR+H++ MVGHPF GSGPQRE VVVLA+E+PY+VIR+FCTAYLR+G EEALRDPWVSQ  G +K+ ++ L +ALE
Sbjct: 1288 VKLSYLDSKLSQYAPGADRRKAYKEMTALERRVRSHLERMVGHPFVGSGPQREAVVVLAVEMPYIVIRVFCTAYLRVGPEEALRDPWVSQHCGPYKKGLRSLADALE 1394
The following BLAST results are available for this feature:
BLAST of NO11G02890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24926.15.600e-3369.16eukaryotic translation initiation factor 2-alpha k... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001964NSK001964Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02890.1NO11G02890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671328gene_5190Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100092g9gene5574Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02890.1NO11G02890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02890 ID=NO11G02890|Name=NO11G02890|organism=Nannochloropsis oceanica|type=gene|length=654bp
ATGGGACCACAGGGAGGGCAGTCATCGTGGATGGGGGGAGGAGGGGAAGG
AGGAGGGGTGGGGCACCATCACCATCATCATGGCCACAATCATTATCACC
ACCATGGGCACGGGCAGAGTATAGAGAGAGGGGGAGGAGGAGGAGGAGGA
GGTGTGGAGGTGATTTTATCGTGCCTAGACACCAAGCACACACAGCATGC
CGCAGGGGATCGACGAAAGGCATTCAAAGAAATGGCTGCATTGGAGAGGA
GGGTGCGCGCTCATATTCAGGGTATGGTAGGACATCCTTTTGCGGGTTCT
GGACCGCAGCGAGAGCCTGTCGTGGTGCTAGCTATGGAGGTCCCTTACAT
GGTTATTCGTATGTTTTGCACGGCTTATTTGAGGTTAGGGGCAGAGGAGG
CCTTAAGGGATCCCTGGGTGAGTCAGCAGGGAGGTGCACATAAAAGGAGC
ATGAAATTGTTGGGAGAGGCGTTGGAGGAAGAGGAGAGGAAGCATTTGAA
GGGGTGGGGAGGAGGAGGCCAAGGGAGGAAGGGTTCAGGGGGGGGGGGGG
AGGTGGTGGCGGAGGAGGAAGTGTGTATGTGTACAGTGTGCTGGAGGATT
GTTTTGACGTGGTTCCGTTGCTTGGGGGACGGGGGCGGGGTCATGTCGGG
TTAG
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protein sequence of NO11G02890.1

>NO11G02890.1-protein ID=NO11G02890.1-protein|Name=NO11G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MGPQGGQSSWMGGGGEGGGVGHHHHHHGHNHYHHHGHGQSIERGGGGGGG
GVEVILSCLDTKHTQHAAGDRRKAFKEMAALERRVRAHIQGMVGHPFAGS
GPQREPVVVLAMEVPYMVIRMFCTAYLRLGAEEALRDPWVSQQGGAHKRS
MKLLGEALEEEERKHLKGWGGGGQGRKGSGGGGEVVAEEEVCMCTVCWRI
VLTWFRCLGDGGGVMSG*
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Synonyms
Publications