NO11G02620, NO11G02620 (gene) Nannochloropsis oceanica

Overview
NameNO11G02620
Unique NameNO11G02620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length624
Alignment locationchr11:818175..818798 -

Link to JBrowse

Properties
Property NameValue
DescriptionSignal recognition particle receptor
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:818175..818798 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0005047signal recognition particle binding
GO:0005525GTP binding
GO:0016787hydrolase activity
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0005785signal recognition particle receptor complex
GO:0016020membrane
GO:0005783endoplasmic reticulum
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR007222Sig_recog_particle_rcpt_asu_N
Homology
[Close]
BLAST of NO11G02620 vs. NCBI_GenBank
Match: EWM24939.1 (signal recognition particle receptor [Nannochloropsis gaditana])

HSP 1 Score: 216.5 bits (550), Expect = 8.000e-53
Identity = 105/138 (76.09%), Postives = 118/138 (85.51%), Query Frame = 0 
Query:    1 MLDQAWIFKKNGAVLWSRSLVAIKGPPGGFLGGSIVNHLIRTVLLEEKAGAAQATLDKHICKWALSNELPGVVFVLVYNKGVFHNLTYVDDFLLRLKEDFLAHFTSARLSAAVGKVEYDARFTKILAAVEARARALKR 139
            MLDQAW+FKKNG VLWSR +V IKGP  GFLG SIV+HLIRTVLLEE+AGAAQATLDKH+CKW+LSN+ PGVVFVLVYNK VF NLTYVD+FL RLKEDFLA F+ A L AA+ +V YD RFT +L A EARARAL+R
Sbjct:    1 MLDQAWVFKKNGVVLWSRCVVPIKGPQEGFLGSSIVHHLIRTVLLEERAGAAQATLDKHVCKWSLSNDQPGVVFVLVYNKNVFQNLTYVDEFLRRLKEDFLATFSPATLVAALSRVNYDERFTNLLGAAEARARALRR 138
[Close]
BLAST of NO11G02620 vs. NCBI_GenBank
Match: CEM02492.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 91.7 bits (226), Expect = 3.000e-15
Identity = 55/138 (39.86%), Postives = 80/138 (57.97%), Query Frame = 0 
Query:    1 MLDQAWIFKKNGAVLWSRSLVAIKGPPGGFLGGSIVNHLIRTVLLEEKAGAAQATLDKHICKWALSNELPGVVFVLVYNKGVFHNLTYVDDFLLRLKEDFLAHFTSARLSAAVGKVEYDARFTKILAAVEARARALKR 139
            M+D   IF   G VLWS   + +KG P        +N LI+TVLLEE+ G +   LD +  KW L NEL  +VFV+VY +G+  NL Y+D  L  +K  F+ H    +++ +  KV ++A+F KIL   E +A+ +KR
Sbjct:    1 MIDAITIFTNGGVVLWSYCFIKLKGDP--------INQLIKTVLLEERTGESVVRLDPYNVKWKLVNELE-LVFVVVY-QGI-QNLLYIDALLDSVKTAFIEHI-GGKVNLSCRKVAFEAKFMKILQDCETKAKEIKR 126
[Close]
BLAST of NO11G02620 vs. NCBI_GenBank
Match: OAO17513.1 (signal recognition particle receptor subunit alpha [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 87.0 bits (214), Expect = 7.300e-14
Identity = 51/130 (39.23%), Postives = 74/130 (56.92%), Query Frame = 0 
Query:    1 MLDQAWIFKKNGAVLWSRSLVAIKGPPGGFLGGSIVNHLIRTVLLEEKAGAAQATLDKHICKWALSNELPGVVFVLVYNKGVFHNLTYVDDFLLRLKEDFLAHFTSARLSAAVGKVEYDARFTKILAAVE 131
            M+D   IF   G VLWS++   I G P        VNHLI+ VLL E+    Q    +++ KW+L+N+L GVVFV+VY + +   L Y+DD L  +K  F A F      + + + ++D +FT+IL AVE
Sbjct:    1 MIDFFCIFTTTGLVLWSKTFCEIVGKP--------VNHLIKNVLLAERTNEKQFIEGQYVLKWSLNNDL-GVVFVVVYQRVL--QLPYIDDLLASVKRSFTATFEGEFPLSGLKEFDFDVQFTQILDAVE 119
[Close]
BLAST of NO11G02620 vs. NCBI_GenBank
Match: OQS05924.1 (signal recognition particle receptor subunit alpha [Thraustotheca clavata])

HSP 1 Score: 86.3 bits (212), Expect = 1.200e-13
Identity = 54/138 (39.13%), Postives = 77/138 (55.80%), Query Frame = 0 
Query:    1 MLDQAWIFKKNGAVLWSRSLVAIKGPPGGFLGGSIVNHLIRTVLLEEKAGAAQATLDKHICKWALSNELPGVVFVLVYNKGVFHNLTYVDDFLLRLKEDFLAHFTSARLSAAVGKVEYDARFTKILAAVEARARALKR 139
            MLD   IF ++GAVLWSRSL  ++G P        V+ L++TVLLEE+ G  +   D +  +W L N+L  +V V+VY K +   L YVD+ L RLK + +A F    L+     + +D  F +IL  VE+     KR
Sbjct:    1 MLDHVSIFSQSGAVLWSRSLCKLRGNP--------VDALVKTVLLEERTGRKEFNYDAYQMRWTLENKL-NLVLVVVYQKVL--QLLYVDELLERLKNEVVAQFQDEILTRT--PIAFDENFDRILRDVESNYMKSKR 125
[Close]
BLAST of NO11G02620 vs. NCBI_GenBank
Match: XP_008868833.1 (hypothetical protein H310_05788 [Aphanomyces invadans] >ETW02228.1 hypothetical protein H310_05788 [Aphanomyces invadans])

HSP 1 Score: 85.9 bits (211), Expect = 1.600e-13
Identity = 52/138 (37.68%), Postives = 77/138 (55.80%), Query Frame = 0 
Query:    1 MLDQAWIFKKNGAVLWSRSLVAIKGPPGGFLGGSIVNHLIRTVLLEEKAGAAQATLDKHICKWALSNELPGVVFVLVYNKGVFHNLTYVDDFLLRLKEDFLAHFTSARLSAAVGKVEYDARFTKILAAVEARARALKR 139
            MLD   IF ++G VLWSRS+  ++G P        V+HL++TVLLEE+ G  +   + +  +W+L N+L  +V V+VY K +   L YVD+ L RLK + +AHF    +        +D  F +IL  VE+     KR
Sbjct:    1 MLDHVSIFSQSGTVLWSRSMCKLRGNP--------VDHLVKTVLLEERLGRKEFNYESYQMRWSLENKLQ-LVLVVVYQKVL--QLLYVDELLERLKREVVAHFAD-DIRTRKAFASFDKTFDRILRDVESGHLKTKR 126
[Close]
BLAST of NO11G02620 vs. NCBI_GenBank
Match: XP_008868834.1 (hypothetical protein, variant [Aphanomyces invadans] >ETW02229.1 hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 85.9 bits (211), Expect = 1.600e-13
Identity = 52/138 (37.68%), Postives = 77/138 (55.80%), Query Frame = 0 
Query:    1 MLDQAWIFKKNGAVLWSRSLVAIKGPPGGFLGGSIVNHLIRTVLLEEKAGAAQATLDKHICKWALSNELPGVVFVLVYNKGVFHNLTYVDDFLLRLKEDFLAHFTSARLSAAVGKVEYDARFTKILAAVEARARALKR 139
            MLD   IF ++G VLWSRS+  ++G P        V+HL++TVLLEE+ G  +   + +  +W+L N+L  +V V+VY K +   L YVD+ L RLK + +AHF    +        +D  F +IL  VE+     KR
Sbjct:    1 MLDHVSIFSQSGTVLWSRSMCKLRGNP--------VDHLVKTVLLEERLGRKEFNYESYQMRWSLENKLQ-LVLVVVYQKVL--QLLYVDELLERLKREVVAHFAD-DIRTRKAFASFDKTFDRILRDVESGHLKTKR 126
[Close]
BLAST of NO11G02620 vs. NCBI_GenBank
Match: XP_008613746.1 (fused signal recognition particle receptor [Saprolegnia diclina VS20] >EQC33060.1 fused signal recognition particle receptor [Saprolegnia diclina VS20])

HSP 1 Score: 83.2 bits (204), Expect = 1.100e-12
Identity = 51/130 (39.23%), Postives = 74/130 (56.92%), Query Frame = 0 
Query:    1 MLDQAWIFKKNGAVLWSRSLVAIKGPPGGFLGGSIVNHLIRTVLLEEKAGAAQATLDKHICKWALSNELPGVVFVLVYNKGVFHNLTYVDDFLLRLKEDFLAHFTSARLSAAVGKVEYDARFTKILAAVE 131
            MLD   IF ++G VLWSRSL  ++G P        V+ L++TVLLEE+ G  +   D +  +W L N+L  +V V+VY K +   L YVD+ L RLK++ +A F     + A   + +D  F +IL  VE
Sbjct:    1 MLDHVSIFSQSGTVLWSRSLCQLRGNP--------VDELVKTVLLEERTGRKELNYDAYQMRWTLENKL-NLVLVVVYQKVL--QLLYVDELLERLKQEVVASFIDEIRARA--PIAFDDAFDRILRDVE 117
[Close]
BLAST of NO11G02620 vs. NCBI_GenBank
Match: OQR83759.1 (signal recognition particle receptor subunit alpha [Achlya hypogyna])

HSP 1 Score: 82.8 bits (203), Expect = 1.400e-12
Identity = 53/138 (38.41%), Postives = 75/138 (54.35%), Query Frame = 0 
Query:    1 MLDQAWIFKKNGAVLWSRSLVAIKGPPGGFLGGSIVNHLIRTVLLEEKAGAAQATLDKHICKWALSNELPGVVFVLVYNKGVFHNLTYVDDFLLRLKEDFLAHFTSARLSAAVGKVEYDARFTKILAAVEARARALKR 139
            MLD   IF ++G VLWSRSL  ++G P        V+ L++TVLLEE+ G  +   D +  +W L N+L  +V V+VY K +   L YVD+ L RLK + +  F       A   + +DA F +IL  VE+     KR
Sbjct:    1 MLDHVSIFSQSGTVLWSRSLCQLRGNP--------VDELVKTVLLEERTGRKELNYDAYQMRWTLENKL-NLVLVVVYQKVL--QLLYVDELLERLKYEVVTQFQDE--IRARSPIVFDAAFDRILRDVESNYLKNKR 125
[Close]
BLAST of NO11G02620 vs. NCBI_GenBank
Match: XP_009827160.1 (hypothetical protein H257_04380 [Aphanomyces astaci] >XP_009827161.1 hypothetical protein, variant 2 [Aphanomyces astaci] >XP_009827162.1 hypothetical protein, variant 3 [Aphanomyces astaci] >XP_009827163.1 hypothetical protein, variant 1 [Aphanomyces astaci] >ETV83730.1 hypothetical protein H257_04380 [Aphanomyces astaci] >ETV83731.1 hypothetical protein, variant 1 [Aphanomyces astaci] >ETV83732.1 hypothetical protein, variant 2 [Aphanomyces astaci] >ETV83733.1 hypothetical protein, variant 3 [Aphanomyces astaci])

HSP 1 Score: 82.4 bits (202), Expect = 1.800e-12
Identity = 51/138 (36.96%), Postives = 77/138 (55.80%), Query Frame = 0 
Query:    1 MLDQAWIFKKNGAVLWSRSLVAIKGPPGGFLGGSIVNHLIRTVLLEEKAGAAQATLDKHICKWALSNELPGVVFVLVYNKGVFHNLTYVDDFLLRLKEDFLAHFTSARLSAAVGKVEYDARFTKILAAVEARARALKR 139
            MLD   IF ++G VLWSRS+  ++G P        V+ L++TVLLEE+ G  +   + +  +W+L N+L  +V V+VY K +   L YVD+ L RLK + +A F    +   V    +D+ F +IL  VE+     KR
Sbjct:    1 MLDHVSIFSQSGTVLWSRSMCKLRGNP--------VDQLVKTVLLEERLGRKEFNYESYQMRWSLENKLQ-LVLVVVYQKVL--QLLYVDELLERLKREVVASFAD-EIRTRVQIASFDSTFDRILRDVESAHLKSKR 126
[Close]
BLAST of NO11G02620 vs. NCBI_GenBank
Match: XP_024586467.1 (signal recognition particle receptor subunit alpha [Plasmopara halstedii] >CEG50098.1 signal recognition particle receptor subunit alpha [Plasmopara halstedii])

HSP 1 Score: 80.5 bits (197), Expect = 6.800e-12
Identity = 51/132 (38.64%), Postives = 74/132 (56.06%), Query Frame = 0 
Query:    1 MLDQAWIFKKNGAVLWSRSLVAIKGPPGGFLGGSIVNHLIRTVLLEEKAGAAQATLDKHICKWALSNELPGVVFVLVYNKGVFHNLTYVDDFLLRLKEDFLAHFTSARLSAAVGKVEYDARFTKILAAVEAR 133
            M+D   IF K G VLWSR+L  + G P        V+ LI  VL+E++AG  +   D +  +W   N+L  +VFV+VY K     L Y+++ L  +K+DF+A F   +  A    V Y+A+FTKIL A E +
Sbjct:    1 MIDHFVIFSKTGTVLWSRTLCKLSGDP--------VDSLISRVLMEDRAGEKKYIEDAYSMQWVFENKL-DLVFVVVYQK--ILQLLYIEELLELVKKDFIAMF--PQQIARKTPVTYEAKFTKILKATELK 119
The following BLAST results are available for this feature:
BLAST of NO11G02620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24939.18.000e-5376.09signal recognition particle receptor [Nannochlorop... [more]
CEM02492.13.000e-1539.86unnamed protein product [Vitrella brassicaformis C... [more]
OAO17513.17.300e-1439.23signal recognition particle receptor subunit alpha... [more]
OQS05924.11.200e-1339.13signal recognition particle receptor subunit alpha... [more]
XP_008868833.11.600e-1337.68hypothetical protein H310_05788 [Aphanomyces invad... [more]
XP_008868834.11.600e-1337.68hypothetical protein, variant [Aphanomyces invadan... [more]
XP_008613746.11.100e-1239.23fused signal recognition particle receptor [Saprol... [more]
OQR83759.11.400e-1238.41signal recognition particle receptor subunit alpha... [more]
XP_009827160.11.800e-1236.96hypothetical protein H257_04380 [Aphanomyces astac... [more]
XP_024586467.16.800e-1238.64signal recognition particle receptor subunit alpha... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL112nonsL112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR020ngnoR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02620.1NO11G02620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|512371gene_5158Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02620.1NO11G02620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02620 ID=NO11G02620|Name=NO11G02620|organism=Nannochloropsis oceanica|type=gene|length=624bp
ATGCTGGATCAGGCGTGGATTTTCAAGAAGAACGGAGCGGTGCTCTGGTC
TCGTTCCTTGGTGGCCATAAAGGGTCCACCGGGCGGCTTCCTGGGAGGGT
CGATCGTCAACCACCTCATCCGCACTGTCCTGCTTGAGGAAAAGGCAGGC
GCTGCGCAAGCCACCCTCGACAAGCACATCTGCAAGTGGGCGCTGAGCAA
TGAATTACCAGGGGTGGTATTTGTGTTGGTATACAATAAGGGTGTATTTC
ACAATTTGACGTATGTGGATGACTTTCTGCTGCGTCTGAAGGAGGACTTC
CTGGCCCACTTCACCTCAGCCCGCTTGTCGGCAGCGGTGGGGAAGGTGGA
ATACGACGCACGATTTACAAAGATCCTGGCGGCAGTGGAGGCGAGGGCAA
GGGCGTTGAAGCGGGGAGGGAGTGGTGCAAGAGGAGGAGGAAGGCCACCG
CTCATACCACCAGGAGGAGGGGGAGGGTTGCTCTTGCCATCGCCGCGGCG
TCGAATGGTTGAGGATCAAGAAGGAGGGGATACGGACGCTGGGAGTAGCT
CGGAGGATGAGGATGAGGCGGGACGGGGGGGGGGGGTACAGATGACGATA
ATCCAGAAACAGAAGAGACGATGA
back to top

protein sequence of NO11G02620.1

>NO11G02620.1-protein ID=NO11G02620.1-protein|Name=NO11G02620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MLDQAWIFKKNGAVLWSRSLVAIKGPPGGFLGGSIVNHLIRTVLLEEKAG
AAQATLDKHICKWALSNELPGVVFVLVYNKGVFHNLTYVDDFLLRLKEDF
LAHFTSARLSAAVGKVEYDARFTKILAAVEARARALKRGGSGARGGGRPP
LIPPGGGGGLLLPSPRRRMVEDQEGGDTDAGSSSEDEDEAGRGGGVQMTI
IQKQKRR*
back to top
Synonyms
Publications