NO11G02510, NO11G02510 (gene) Nannochloropsis oceanica

Overview
NameNO11G02510
Unique NameNO11G02510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length550
Alignment locationchr11:796984..797533 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:796984..797533 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO11G02510 vs. NCBI_GenBank
Match: XP_005855253.1 (hypothetical protein NGA_0082200, partial [Nannochloropsis gaditana CCMP526] >EKU21110.1 hypothetical protein NGA_0082200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 139.0 bits (349), Expect = 7.800e-30
Identity = 63/78 (80.77%), Postives = 73/78 (93.59%), Query Frame = 0 
Query:    1 MTTTRLVRPPRLLGFGGRPYNFFERDALPQNLSSVLKGKFAAVLMVEGALIFGDDQGHITFTDADLRLSLQHRILSPP 79
            M++++LVRPPRLLGFGGRPYNFF+RD+LP+NLSSVLKG  A+ L+VEGALIF DDQGHITFTDADL +SLQHRILSPP
Sbjct:    1 MSSSKLVRPPRLLGFGGRPYNFFDRDSLPRNLSSVLKGNLASALLVEGALIFADDQGHITFTDADLHVSLQHRILSPP 78
[Close]
BLAST of NO11G02510 vs. NCBI_GenBank
Match: EWM24909.1 (hypothetical protein Naga_100092g1 [Nannochloropsis gaditana])

HSP 1 Score: 139.0 bits (349), Expect = 7.800e-30
Identity = 63/78 (80.77%), Postives = 73/78 (93.59%), Query Frame = 0 
Query:    1 MTTTRLVRPPRLLGFGGRPYNFFERDALPQNLSSVLKGKFAAVLMVEGALIFGDDQGHITFTDADLRLSLQHRILSPP 79
            M++++LVRPPRLLGFGGRPYNFF+RD+LP+NLSSVLKG  A+ L+VEGALIF DDQGHITFTDADL +SLQHRILSPP
Sbjct:    1 MSSSKLVRPPRLLGFGGRPYNFFDRDSLPRNLSSVLKGNLASALLVEGALIFADDQGHITFTDADLHVSLQHRILSPP 78
The following BLAST results are available for this feature:
BLAST of NO11G02510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855253.17.800e-3080.77hypothetical protein NGA_0082200, partial [Nannoch... [more]
EWM24909.17.800e-3080.77hypothetical protein Naga_100092g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL112nonsL112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR020ngnoR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001975NSK001975Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02510.1NO11G02510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|647864gene_5150Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100092g1gene5566Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02510.1NO11G02510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02510 ID=NO11G02510|Name=NO11G02510|organism=Nannochloropsis oceanica|type=gene|length=550bp
ATGACAACAACGCGGCTTGTGCGTCCGCCCCGCCTCCTGGGTTTTGGAGG
CCGGCCGTACAATTTCTTCGAGCGGGATGCTCTCCCGCAGAACCTTTCTT
CGGTGCTGgtacgtgatttttccaggctatctatgtaatctgcctcgcat
tctcatcctcttctccccttatcttctcatgccacgtccacatcttcgtt
ccagtggcagcacacctgcgcgtggtctggcttccgttgatgcatggcac
aacttttcatgctccattttcttctctctctctgcctcttcgcattttta
ctattcattcctcccttcctctcacgtctctcttccactccccacgcacc
acatgcagAAAGGCAAGTTCGCCGCCGTCCTCATGGTTGAAGGCGCGCTC
ATCTTTGGAGACGACCAAGGCCATATCACCTTCACTGATGCCGACCTCCG
CCTCTCCCTCCAACACCGCATCCTATCCCCCCCCCCTCACTTCCTTCCTC
GTCCTATCCTTCCCTCCTGCTTGCCCGCTCCCGGCAATCCCCCCCCCTGA
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protein sequence of NO11G02510.1

>NO11G02510.1-protein ID=NO11G02510.1-protein|Name=NO11G02510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
MTTTRLVRPPRLLGFGGRPYNFFERDALPQNLSSVLKGKFAAVLMVEGAL
IFGDDQGHITFTDADLRLSLQHRILSPPPHFLPRPILPSCLPAPGNPPP*
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Synonyms
Publications