NO11G01980, NO11G01980 (gene) Nannochloropsis oceanica

Overview
NameNO11G01980
Unique NameNO11G01980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1461
Alignment locationchr11:640944..642404 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:640944..642404 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO11G01980 vs. NCBI_GenBank
Match: EWM25013.1 (hypothetical protein Naga_100068g8 [Nannochloropsis gaditana])

HSP 1 Score: 113.2 bits (282), Expect = 5.700e-22
Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = 0 
Query:   14 MALRRLLLTPGRQLAVPSVLCALTTTAARAFGDHRSSFEDKEEALEKQFMYNANKKTMEQFAEKVAEKEKTQDVAKQELCEILGHTVPEDMMQKLLAWKDRHSKHEFWMK 124
            MAL  ++   GRQL +           +R   DHRS+FE+KEEALEKQ+MY  NKKTMEQF  K+  +E  Q VAKQELCEILGH++PED+M+KL AWKD+HS  +  +K
Sbjct:    1 MALWHIIRAHGRQLRL--------GFGSRWLSDHRSTFENKEEALEKQYMYEQNKKTMEQFTAKMVARENQQGVAKQELCEILGHSIPEDVMKKLFAWKDKHSNRDVHVK 102
The following BLAST results are available for this feature:
BLAST of NO11G01980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25013.15.700e-2254.55hypothetical protein Naga_100068g8 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002063NSK002063Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01980.1NO11G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100068g8gene5481Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01980.1NO11G01980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01980 ID=NO11G01980|Name=NO11G01980|organism=Nannochloropsis oceanica|type=gene|length=1461bp
GGCGGTGTTCTGTTCTGTTATGCTTCACTTGTATTGCTTCGTTGCCCTTG
CGATATTGAGAAAGATGGCAACCGAAAAGCCTTGAATCTTATAATATGAG
CTTTGCATACCATTTGCTTTCGCCATGAGAAGTTGCCTCCCACCTCCCCC
TTTTTATGAGGCAACATACACACCTGTGTACACAGACATCTCTCTCCCCT
GGCTTTGACAATTTGACATTCCCCTCTTGTCTAAGCACGGGCTATTGAAG
TTCACAGCAATATCATGGAATCTTAAAATTTCCTCTCGGTACGTACATGC
CTTTCCCGACAGGAAGCCTCTCGTCAAAACTTATCATGGCTCTGCGCAGG
CTACTGCTGACACCAGGCCGGCAGCTCGCGGTGCCCTCTGTCCTGTGTGC
CCTAACTACTACTGCGGCCCGAGCCTTTGGCGACCACCGCTCATCGTTTG
AGGATAAAGAAGAGGCGTTGGAGAAGCAATTCATGTACAACGCGAACAAG
AAGACAATGGAGCAATTTGCGGAAAAGGTGGCCGAAAAGGAAAAAACGCA
AGACGTAGCAAAGCAGGAACTGTGCGAGATCCTGGGGCACACCGTTCCGG
AGGATATGATGCAAAAACTACTGGCTTGGAAAGATAGGCACAGCAAACAT
GAGTTTTGGATGAAGTAAGGAGGTGTGTATCTCTCATGGAAGAAGTGCTG
GCATCGCTTGCCTCTTTGGGGGCGACACAGACAAATAAGCGAGATATTGA
AGGAGCGAGTGAGGCAAGCGGAGAACATACAAGAAACACGATTGAAAATG
AAGTGGTGATTAATGTATTCGCATTCGAACAAAAAAGAGAAAACGTGCAA
GACATTCGCGAGAAGAAGAAACAAAGTGTGGCGGTGCCCTCCCATCCCCA
TCCCCACATAAAAAAGCTTCTTCTGTCTTCGATAAAGTCGCTCAAAAATA
CTCAACCTTTCTCCATTAAGTAGTTTCGAATCACTTTGCGCGATCACAGA
CGCCTTCTTCCTTCTCTTTGGTACAAAGCTGTCCGTCTCCTTCGCCGCGC
GGCATTACCGGTCACCGGGATTGATCAGCAAGTGTTGCGGAAGAAAATGG
AAAGAGGACAGGTAATGGTCACTGAATAATAAAACATCACCATGATAGCT
AGGAGTCGCAAACATCTTCAGTCCCGAGCTGTTTGTCATCGTCGTCGTCG
CGCCTTGCATTCCCCTGTCTTGATGGCGAGGAGAGGCTTTAGAGCGCAAG
CCATAAATCGTCTCCTGCCTGGCGTTTTGCTCATTCAATAACTAATTTTG
TGGCTTGGTCCCCGTATAGAAAAGCTCGTATCGCCAGTCTTAAACGTCTG
GCAATCAGTATGGGTTCCCTGTTGCTGCCTATCAGCTTTGCTATGTGTCA
GGTCGTGTGTCAGCGTGTCAGCTTTGACCTGCCCGGGATTCGCGGGGCAA
GCGGACAGACC
back to top

protein sequence of NO11G01980.1

>NO11G01980.1-protein ID=NO11G01980.1-protein|Name=NO11G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MPFPTGSLSSKLIMALRRLLLTPGRQLAVPSVLCALTTTAARAFGDHRSS
FEDKEEALEKQFMYNANKKTMEQFAEKVAEKEKTQDVAKQELCEILGHTV
PEDMMQKLLAWKDRHSKHEFWMK*
back to top
Synonyms
Publications