NO11G01980.1, NO11G01980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01980.1
Unique NameNO11G01980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1461
Alignment locationchr11:640944..642404 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:640944..642404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01980.1 vs.
Match: EWM25013.1 (hypothetical protein Naga_100068g8 [Nannochloropsis gaditana])

HSP 1 Score: 113.6 bits (283), Expect = 4.300e-22
Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = 0 
Query:   14 MALRRLLLTPGRQLAVPSVLCALTTTAARAFGDHRSSFEDKEEALEKQFMYNANKKTMEQFAEKVAEKEKTQDVAKQELCEILGHTVPEDMMQKLLAWKDRHSKHEFWMK 124
            MAL  ++   GRQL +           +R   DHRS+FE+KEEALEKQ+MY  NKKTMEQF  K+  +E  Q VAKQELCEILGH++PED+M+KL AWKD+HS  +  +K
Sbjct:    1 MALWHIIRAHGRQLRLGF--------GSRWLSDHRSTFENKEEALEKQYMYEQNKKTMEQFTAKMVARENQQGVAKQELCEILGHSIPEDVMKKLFAWKDKHSNRDVHVK 102
The following BLAST results are available for this feature:
BLAST of NO11G01980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25013.14.300e-2254.55hypothetical protein Naga_100068g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01980NO11G01980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01980.1NO11G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01980.1.cds1NO11G01980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01980.1 ID=NO11G01980.1|Name=NO11G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1461bp
GGCGGTGTTCTGTTCTGTTATGCTTCACTTGTATTGCTTCGTTGCCCTTG
CGATATTGAGAAAGATGGCAACCGAAAAGCCTTGAATCTTATAATATGAG
CTTTGCATACCATTTGCTTTCGCCATGAGAAGTTGCCTCCCACCTCCCCC
TTTTTATGAGGCAACATACACACCTGTGTACACAGACATCTCTCTCCCCT
GGCTTTGACAATTTGACATTCCCCTCTTGTCTAAGCACGGGCTATTGAAG
TTCACAGCAATATCATGGAATCTTAAAATTTCCTCTCGGTACGTACATGC
CTTTCCCGACAGGAAGCCTCTCGTCAAAACTTATCATGGCTCTGCGCAGG
CTACTGCTGACACCAGGCCGGCAGCTCGCGGTGCCCTCTGTCCTGTGTGC
CCTAACTACTACTGCGGCCCGAGCCTTTGGCGACCACCGCTCATCGTTTG
AGGATAAAGAAGAGGCGTTGGAGAAGCAATTCATGTACAACGCGAACAAG
AAGACAATGGAGCAATTTGCGGAAAAGGTGGCCGAAAAGGAAAAAACGCA
AGACGTAGCAAAGCAGGAACTGTGCGAGATCCTGGGGCACACCGTTCCGG
AGGATATGATGCAAAAACTACTGGCTTGGAAAGATAGGCACAGCAAACAT
GAGTTTTGGATGAAGTAAGGAGGTGTGTATCTCTCATGGAAGAAGTGCTG
GCATCGCTTGCCTCTTTGGGGGCGACACAGACAAATAAGCGAGATATTGA
AGGAGCGAGTGAGGCAAGCGGAGAACATACAAGAAACACGATTGAAAATG
AAGTGGTGATTAATGTATTCGCATTCGAACAAAAAAGAGAAAACGTGCAA
GACATTCGCGAGAAGAAGAAACAAAGTGTGGCGGTGCCCTCCCATCCCCA
TCCCCACATAAAAAAGCTTCTTCTGTCTTCGATAAAGTCGCTCAAAAATA
CTCAACCTTTCTCCATTAAGTAGTTTCGAATCACTTTGCGCGATCACAGA
CGCCTTCTTCCTTCTCTTTGGTACAAAGCTGTCCGTCTCCTTCGCCGCGC
GGCATTACCGGTCACCGGGATTGATCAGCAAGTGTTGCGGAAGAAAATGG
AAAGAGGACAGGTAATGGTCACTGAATAATAAAACATCACCATGATAGCT
AGGAGTCGCAAACATCTTCAGTCCCGAGCTGTTTGTCATCGTCGTCGTCG
CGCCTTGCATTCCCCTGTCTTGATGGCGAGGAGAGGCTTTAGAGCGCAAG
CCATAAATCGTCTCCTGCCTGGCGTTTTGCTCATTCAATAACTAATTTTG
TGGCTTGGTCCCCGTATAGAAAAGCTCGTATCGCCAGTCTTAAACGTCTG
GCAATCAGTATGGGTTCCCTGTTGCTGCCTATCAGCTTTGCTATGTGTCA
GGTCGTGTGTCAGCGTGTCAGCTTTGACCTGCCCGGGATTCGCGGGGCAA
GCGGACAGACC
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protein sequence of NO11G01980.1

>NO11G01980.1-protein ID=NO11G01980.1-protein|Name=NO11G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MPFPTGSLSSKLIMALRRLLLTPGRQLAVPSVLCALTTTAARAFGDHRSS
FEDKEEALEKQFMYNANKKTMEQFAEKVAEKEKTQDVAKQELCEILGHTV
PEDMMQKLLAWKDRHSKHEFWMK*
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mRNA from alignment at chr11:640944..642404-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01980.1 ID=NO11G01980.1|Name=NO11G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1461bp|location=Sequence derived from alignment at chr11:640944..642404- (Nannochloropsis oceanica)
GGCGGTGTTCTGTTCTGTTATGCTTCACTTGTATTGCTTCGTTGCCCTTG
CGATATTGAGAAAGATGGCAACCGAAAAGCCTTGAATCTTATAATATGAG
CTTTGCATACCATTTGCTTTCGCCATGAGAAGTTGCCTCCCACCTCCCCC
TTTTTATGAGGCAACATACACACCTGTGTACACAGACATCTCTCTCCCCT
GGCTTTGACAATTTGACATTCCCCTCTTGTCTAAGCACGGGCTATTGAAG
TTCACAGCAATATCATGGAATCTTAAAATTTCCTCTCGGTACGTACATGC
CTTTCCCGACAGGAAGCCTCTCGTCAAAACTTATCATGGCTCTGCGCAGG
CTACTGCTGACACCAGGCCGGCAGCTCGCGGTGCCCTCTGTCCTGTGTGC
CCTAACTACTACTGCGGCCCGAGCCTTTGGCGACCACCGCTCATCGTTTG
AGGATAAAGAAGAGGCGTTGGAGAAGCAATTCATGTACAACGCGAACAAG
AAGACAATGGAGCAATTTGCGGAAAAGGTGGCCGAAAAGGAAAAAACGCA
AGACGTAGCAAAGCAGGAACTGTGCGAGATCCTGGGGCACACCGTTCCGG
AGGATATGATGCAAAAACTACTGGCTTGGAAAGATAGGCACAGCAAACAT
GAGTTTTGGATGAAGTAAGGAGGTGTGTATCTCTCATGGAAGAAGTGCTG
GCATCGCTTGCCTCTTTGGGGGCGACACAGACAAATAAGCGAGATATTGA
AGGAGCGAGTGAGGCAAGCGGAGAACATACAAGAAACACGATTGAAAATG
AAGTGGTGATTAATGTATTCGCATTCGAACAAAAAAGAGAAAACGTGCAA
GACATTCGCGAGAAGAAGAAACAAAGTGTGGCGGTGCCCTCCCATCCCCA
TCCCCACATAAAAAAGCTTCTTCTGTCTTCGATAAAGTCGCTCAAAAATA
CTCAACCTTTCTCCATTAAGTAGTTTCGAATCACTTTGCGCGATCACAGA
CGCCTTCTTCCTTCTCTTTGGTACAAAGCTGTCCGTCTCCTTCGCCGCGC
GGCATTACCGGTCACCGGGATTGATCAGCAAGTGTTGCGGAAGAAAATGG
AAAGAGGACAGGTAATGGTCACTGAATAATAAAACATCACCATGATAGCT
AGGAGTCGCAAACATCTTCAGTCCCGAGCTGTTTGTCATCGTCGTCGTCG
CGCCTTGCATTCCCCTGTCTTGATGGCGAGGAGAGGCTTTAGAGCGCAAG
CCATAAATCGTCTCCTGCCTGGCGTTTTGCTCATTCAATAACTAATTTTG
TGGCTTGGTCCCCGTATAGAAAAGCTCGTATCGCCAGTCTTAAACGTCTG
GCAATCAGTATGGGTTCCCTGTTGCTGCCTATCAGCTTTGCTATGTGTCA
GGTCGTGTGTCAGCGTGTCAGCTTTGACCTGCCCGGGATTCGCGGGGCAA
GCGGACAGACC
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Coding sequence (CDS) from alignment at chr11:640944..642404-

>NO11G01980.1 ID=NO11G01980.1|Name=NO11G01980.1|organism=Nannochloropsis oceanica|type=CDS|length=372bp|location=Sequence derived from alignment at chr11:640944..642404- (Nannochloropsis oceanica)
ATGCCTTTCCCGACAGGAAGCCTCTCGTCAAAACTTATCATGGCTCTGCG
CAGGCTACTGCTGACACCAGGCCGGCAGCTCGCGGTGCCCTCTGTCCTGT
GTGCCCTAACTACTACTGCGGCCCGAGCCTTTGGCGACCACCGCTCATCG
TTTGAGGATAAAGAAGAGGCGTTGGAGAAGCAATTCATGTACAACGCGAA
CAAGAAGACAATGGAGCAATTTGCGGAAAAGGTGGCCGAAAAGGAAAAAA
CGCAAGACGTAGCAAAGCAGGAACTGTGCGAGATCCTGGGGCACACCGTT
CCGGAGGATATGATGCAAAAACTACTGGCTTGGAAAGATAGGCACAGCAA
ACATGAGTTTTGGATGAAGTAA
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Synonyms
Publications