NO11G01560, NO11G01560 (gene) Nannochloropsis oceanica

Overview
NameNO11G01560
Unique NameNO11G01560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2598
Alignment locationchr11:520914..523511 -

Link to JBrowse

Properties
Property NameValue
DescriptionSolute carrier family 52, riboflavin transporter, member 3-A
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:520914..523511 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005887integral component of plasma membrane
GO:0016021integral component of membrane
GO:0016020membrane
GO:0005887integral component of plasma membrane
Vocabulary: Molecular Function
TermDefinition
GO:0032217riboflavin transmembrane transporter activity
GO:0032217riboflavin transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0032218riboflavin transport
GO:0032218riboflavin transport
Vocabulary: INTERPRO
TermDefinition
IPR009357Endogenous_retrovirus_rcpt
Homology
BLAST of NO11G01560 vs. NCBI_GenBank
Match: EWM26594.1 (riboflavin transporter 2 [Nannochloropsis gaditana])

HSP 1 Score: 125.6 bits (314), Expect = 4.600e-25
Identity = 101/399 (25.31%), Postives = 162/399 (40.60%), Query Frame = 0
Query:   32 IHLALAAWGFSSWILFNGLWGQLPLFIRTLPEGNKLGVLILAAEQLAYIFPLLFMYKKRRFNNSRRSQEMDIWIVLLSGLAVSLLLSRYWHAQAVI---DKHLHSIGLLSLAFLTGAVCSSTGVVFTPYLATLPKSYTSAHTAGAGLSGLAVALLTLAADAGSLHPRLSIERYFNVLSLVFLGSCCAFYYVRTHINMEEMYEAIGHASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSLCDTQXXXXXXXXXXXXXXXXXXXXXXXXXXXGRATGESSRTKESYAAVFTLQCLLSALAYGMVPSILPLACSGYRDPSRTLMLSTVGFMCADPLGKLATSFLPTGRIFGLGLFTMAVAGWLLYCAVRSPKPPLSELPFGGWVVIVANSVFS 428
            +  A  A G SS++L N LW ++P  +  LPEGNKLG  +L + Q A + P++ M +     +     E  IW +LL G+  S L+S  W A   I       H++ L+ L FL G + +S+ +   P++A   + Y SA   G GLSG+ V+L+ L  + G   PR S+  YF  +S +++ S   F +    +  EE ++    A                                          + +                              T   +            Q  +S  AYG++P++ P++ SGY+  +  L  S++  M  DPL +  T  L   R+  L +    +A  L   A  SP+PP  + P GG  V+  N  F+
Sbjct:   18 LQAAFTALGLSSFMLSNALWAEMPALVSALPEGNKLGSYLLLSLQAANVVPVIAMLRGPEVVH----LESIIWALLLGGVVASQLMSFCWAATTPIPGAGGKSHALSLILLTFLAGCINNSSSLFLYPFVARWERRYVSALATGEGLSGILVSLIGLTQNVGGARPRFSVRAYFQGVSALYVFSLLGFLF----LLQEERHKKARVALSMDRVVAE---------------------------------ERETAWQGGAKKRVLLSVKDEDSDALVVPLSAPTLAPAPVLALIWPFLLAQFGISLWAYGVIPALTPISTSGYQHAAHVLQYSSIVSMALDPLSRALTHRLRCYRLPLLVVLVNVLATVLCVAAAISPRPPFVDQPLGGLFVVFFNGAFT 375          
BLAST of NO11G01560 vs. NCBI_GenBank
Match: OQS02094.1 (hypothetical protein THRCLA_05502 [Thraustotheca clavata])

HSP 1 Score: 123.2 bits (308), Expect = 2.300e-24
Identity = 99/397 (24.94%), Postives = 167/397 (42.07%), Query Frame = 0
Query:   32 IHLALAAWGFSSWILFNGLWGQLPLFIRTLPEGNKLGVLILAAEQLAYIFPLLFMYKKRRFNNSRR--SQEMDIWIVLLSGLAVSLLLSRYWHAQAVIDKHLHSIGLLSLAFLTGAVCSSTGVVFTPYLATLPKSYTSAHTAGAGLSGLAVALLTLAADAGSLHPRLSIERYFNVLSLVFLGSCCAFYYVRTHINMEEMYEAIGHASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSLCDTQXXXXXXXXXXXXXXXXXXXXXXXXXXXGRATGESSRTKESYAAVFTLQCLLSALAYGMVPSILPLACSGYRDPSRTLMLSTVGFMCADPLGKLATSFLPTGRIFGLGLFTMAVAGWLLYCAVRSPKPPLSELPFGGWVVIVANSVF 427
            +++A   +G  SWI+ N ++ ++    +  PE   +   ++ A Q + +FP+++M      NN ++  S    IW +L  G+ V +LLS +W   +V   H HS  LL L F  G V S+T VV+ P++AT P  +TSA + G GLSG+   ++ L  D GS +  ++I  YF   +LVFL +  AF ++      ++++ ++ H                                                                            T   +          T Q +L A++YG++PSILP   S Y +    L  S+V  M +DPL +  TSF     +  L L T+++ G L+  +     P  +   +GG + +  N +F
Sbjct:   26 VYVAFIIFGLGSWIMTNCVFVEIAALYQQTPEKAAISAYLIVAIQASNVFPMIYML----LNNEQQYFSIRAAIWGLLTLGILVCVLLSIFWDQTSVFFGHSHSTALLVLVFFGGMVSSTTSVVYYPFVATFPPLFTSALSTGEGLSGVIAGVIGLIQDPGSKNMNITIGGYFFCGALVFLVALIAFAFLVKSSWAQKIHTSMYHEDSGDFEYKF---------------------------------TPPIKRVLSSSTPRMNETLPLVLPHKKHYFANDTDRRNYVLTKLWKPLTCQVILCAMSYGVIPSILPFLGSKYVNGGEVLKWSSVLSMASDPLARFITSFYRWYNVTLLTLITISL-GLLMTFSATLQHPLFASYTYGGIIPVAGNCIF 384          
BLAST of NO11G01560 vs. NCBI_GenBank
Match: OQR83826.1 (hypothetical protein ACHHYP_14251 [Achlya hypogyna])

HSP 1 Score: 117.5 bits (293), Expect = 1.200e-22
Identity = 105/402 (26.12%), Postives = 168/402 (41.79%), Query Frame = 0
Query:   30 RHIHLALAAWGFSSWILFNGLWGQLPLFIRTLPEGNKLGVLILAAEQLAYIFPLLFMYKKRRFNNSRR--SQEMDIWIVLLSGLAVSLLLSRYWHAQAVIDKHLHSIGLLSLAFLTGAVCSSTGVVFTPYLATLPKSYTSAHTAGAGLSGLAVALLTLAADAGSLHPRLSIERYFNVLSLVFLGSCCAFYYVRTHINMEEMYEAIGHASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSLCDTQXXXXXXXXXXXXXXXXXXXXXXXXXXXGRATGESSRTKESYAAVFTLQCLLSALAYGMVPSILPLACSGYRDPSRTLMLSTVGFMCADPLGKLATSFLPTGRIFGLGLFTMAVAGWLLYCAV-RSPKPPL-SELPFGGWVVIVANSVFS 428
            R  +LA   +G  SWIL + ++ +    ++  PEG  +G  ++ A Q A IFPLL+M     FN+ ++  S    IW +L+ G+A   LLS +W  + +I  HLHS  L +L F  GAV +++ VVF P+ AT P  +TSA   G  L  +   +L +  D GS     S+   F   +++FL S  +F Y+R      E++                                                D +                            +     S   ++       Q LL+  ++ ++PS+LP+    Y++    +  ++V  M  DP  + AT F    RI  + LFT A   + L+  +  S K PL S  P GG +V+VAN  ++
Sbjct:   10 RQTYLAFIGFGLGSWILSDFVFAEFAALMQKTPEGYSIGAYVIVALQSANIFPLLYML----FNSRQQLISIPTMIWGLLVLGMAACALLSIFWDTKTMIGGHLHSTALFALIFCGGAVSATSTVVFYPFAATYPVMFTSALATGESLGAVIAGVLAIIQDVGSDSMNFSVGVAFLCGAVIFLISFVSFAYLRRQNTSVEIF-----------------------------------------------ADQEMLLQ------------------------QPNMAHSTVLKAIWRTLLCQWLLAIFSFAVIPSVLPILGGKYKNSPVVMKWTSVLGMLCDPAARFATGFY---RIRRVELFTAAALFFALWLTIWASYKEPLWSTAPSGGVMVVVANCFYT 333          
BLAST of NO11G01560 vs. NCBI_GenBank
Match: XP_008880401.1 (hypothetical protein, variant 4 [Aphanomyces invadans] >ETV91011.1 hypothetical protein, variant 4 [Aphanomyces invadans])

HSP 1 Score: 115.2 bits (287), Expect = 6.200e-22
Identity = 111/402 (27.61%), Postives = 180/402 (44.78%), Query Frame = 0
Query:   32 IHLALAAWGFSSWILFNGLWGQLPLFIRTLPEGNKLGVLILAAEQLAYIFPLLFMYKKRRFNNSRR--SQEMDIWIVLLSGLAVSLLLSRYWHAQAVIDKHLHSIGLLSLAFLTGAVCSSTGVVFTPYLATLPKSYTSAHTAGAGLSGLAVALLTLAADAGSLHPRLSIERYFNVLSLVFLGSCCAFYYVRTHINMEEMYEAIGHASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSLCDTQXXXXXXXXXXXXXXXXXXXXXXXXXXXGRATGESSRTKESYAAV-----FTLQCLLSALAYGMVPSILPLACSGYRDPSRTLMLSTVGFMCADPLGKLATSFLPTGRIFGLGLFTMAVAGWLLYCAVRSPKPPLSELPFGGWVVIVANSVF 427
            ++ A   +G  SWI+ N ++ +     + +PE   +   ++ A Q A IFP L+M     FN+ ++  +    IW++L  G+   +LLS +W   +V   H HS  LL+L F  GAV ++T VV+ P+++T P  +TSA + G GLSG+   ++ +  D G+   RLS+  +F     VF  +  A++++ T      +   + H++                                          T+      XXXXXXXXXXXXXXX           ES   +  Y           Q +L A+++G++PSI+P   S Y   ++ L  S+V  M  DP  +  TSF     +  L   T+ V G ++  +  +  P  S   +GG   + AN  F
Sbjct:   83 VYAAFIVFGLGSWIMTNSVFIETAALFQRVPEKAAISAYLIVALQGANIFPTLYMV----FNSDQQLFTIRTAIWVLLALGVLTCVLLSLFWDITSVFWGHEHSTALLALVFFGGAVSATTTVVYYPFVSTFPPVFTSALSTGEGLSGVVAGVIGIWQDPGATPMRLSVSTFFRWAGGVFAVAMVAYWFLAT----SAIARDVQHSNYAEDPGAFECKFTPP--------------------------TTRSKSARSXXXXXXXXXXXXXXXPLVSPVAPHRFESPTHRRDYVLCKLWKPLLFQFVLCAMSFGVIPSIMPFLGSKYLSSAQVLKWSSVLSMACDPCARFLTSFYRWYNVTALSAMTLFV-GLVMVLSSTTADPIFSTYAYGGLAPVAANCSF 449          
BLAST of NO11G01560 vs. NCBI_GenBank
Match: XP_012204772.1 (hypothetical protein SPRG_10325 [Saprolegnia parasitica CBS 223.65] >KDO24510.1 hypothetical protein SPRG_10325 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 113.6 bits (283), Expect = 1.800e-21
Identity = 100/402 (24.88%), Postives = 164/402 (40.80%), Query Frame = 0
Query:   30 RHIHLALAAWGFSSWILFNGLWGQLPLFIRTLPEGNKLGVLILAAEQLAYIFPLLFMYKKRRFNNSRR--SQEMDIWIVLLSGLAVSLLLSRYWHAQAVIDKHLHSIGLLSLAFLTGAVCSSTGVVFTPYLATLPKSYTSAHTAGAGLSGLAVALLTLAADAGSLHPRLSIERYFNVLSLVFLGSCCAFYYVRTHINMEEMYEAIGHASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSLCDTQXXXXXXXXXXXXXXXXXXXXXXXXXXXGRATGESSRTKESYAAVFTLQCLLSALAYGMVPSILPLACSGYRDPSRTLMLSTVGFMCADPLGKLATSFLPTGRIFGLGLFTMAVAGWLLYCAV-RSPKPPL-SELPFGGWVVIVANSVFS 428
            RH +LA   +G  SW++ + ++ +    ++  PEG  +G  ++ A Q A IFPLL+M     FN+ ++  S    IW +L+ G+   +LLS +W  + VI  HLHS  L +L F  GAV +++ VVF P+ AT P  +TSA   G  L  +   +L +  D GS     S+   F   + +FL S   F Y+R      E++                                                D +                                  S   ++       Q LL+  ++ ++PS+LP+    Y+     +  ++V  M  DP  +    F    RI  + +FT A   + L+  V  S K PL  + P GG +V++AN +++
Sbjct:   10 RHTYLAFIGFGLGSWVISDFVFAEFAALMQKTPEGYSIGAYVIVALQSANIFPLLYML----FNSRQQLISIPTMIWGLLVLGMVACILLSIFWDTKTVIGGHLHSTALFALIFCGGAVSATSTVVFYPFAATYPVMFTSALATGESLGAVIAGVLAIIQDVGSDPMTFSVGVAFLCGAFIFLISFACFAYLRRQTTSVEIF-----------------------------------------------ADQELLLQQPHM------------------------AHSTVLKAIWRTLLCQWLLAIFSFAVIPSVLPILGGKYKHSPVVMKWTSVLGMLCDPTARFIAGFY---RIKKVEVFTAAALFFALWLTVWASYKAPLWCDAPAGGVMVVIANCLYT 333          
BLAST of NO11G01560 vs. NCBI_GenBank
Match: OQR97780.1 (hypothetical protein ACHHYP_10014 [Achlya hypogyna])

HSP 1 Score: 111.7 bits (278), Expect = 6.900e-21
Identity = 97/402 (24.13%), Postives = 161/402 (40.05%), Query Frame = 0
Query:   32 IHLALAAWGFSSWILFNGLWGQLPLFIRTLPEGNKLGVLILAAEQLAYIFPLLFMYKKRRFNNSRR--SQEMDIWIVLLSGLAVSLLLSRYWHAQAVIDKHLHSIGLLSLAFLTGAVCSSTGVVFTPYLATLPKSYTSAHTAGAGLSGLAVALLTLAADAGSLHPRLSIERYFNVLSLVFLGSCCAFYYVRTHINMEEMYEAIGHASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSLCDTQXXXXXXXXXXXXXXXXXXXXXXXXXXXGRATGESSRTKESYAAV-----FTLQCLLSALAYGMVPSILPLACSGYRDPSRTLMLSTVGFMCADPLGKLATSFLPTGRIFGLGLFTMAVAGWLLYCAVRSPKPPLSELPFGGWVVIVANSVF 427
            ++ A   +G  SWI+ N ++ ++    +  PE   +   ++ A Q + IFP L+M     FNN ++  S    IW +L  G+ V +LLS +W   +VI  H HS  LL              VV+ P++AT P  +TSA + G GLSG+   +L +  D G+ H  ++I  +F   ++VF  +  AF ++       E++ ++                                           + +T                             +    SS  + +Y         + Q +L A+++G++PSILP   S Y D +  L  S+V  M  DPL +  TSF     +  L   T+ +   ++  +  S  P  S  P GG   + AN  F
Sbjct:   44 VYAAFILFGLGSWIMSNCVFVEIAALYQRTPEKAAISAYLIVAIQASNIFPTLYM----MFNNEQQLVSIRTAIWALLAMGIVVCVLLSIFWDQTSVIFGHSHSTALLXXXXXXXXXXXXXXVVYYPFVATFPPLFTSALSTGEGLSGVIAGVLGIVQDPGASHMNITIGGFFFYGAIVFFVALLAFVFLTKSSWATEIHSSMYREDSGDFDYKFTPPLKRAPPSPAR-----------------KMSET---------------------LPLVLPQSKHQFSSSVERRNYVLTKLWKPLSCQVILCAMSFGVIPSILPFLGSKYADSAEVLKWSSVLSMACDPLARFLTSFYRWYNVTALTSLTVLLGAGMVVSST-SAHPLFSAHPLGGIAPVAANCTF 402          
BLAST of NO11G01560 vs. NCBI_GenBank
Match: XP_008613036.1 (hypothetical protein SDRG_08912 [Saprolegnia diclina VS20] >EQC33396.1 hypothetical protein SDRG_08912 [Saprolegnia diclina VS20])

HSP 1 Score: 111.3 bits (277), Expect = 9.000e-21
Identity = 67/202 (33.17%), Postives = 106/202 (52.48%), Query Frame = 0
Query:   30 RHIHLALAAWGFSSWILFNGLWGQLPLFIRTLPEGNKLGVLILAAEQLAYIFPLLFMYKKRRFNNSRR--SQEMDIWIVLLSGLAVSLLLSRYWHAQAVIDKHLHSIGLLSLAFLTGAVCSSTGVVFTPYLATLPKSYTSAHTAGAGLSGLAVALLTLAADAGSLHPRLSIERYFNVLSLVFLGSCCAFYYVRTHINMEEMY 230
            RH +LA   +G  SW++ + ++ +    ++  PEG  +G  ++ A Q A IFPLL+M     FN+ ++  S    IW +L+ G+   +LLS +W  + VI  HLHS  L ++ F  GAV +++ VVF P+ AT P  +TSA   G  L  +   +L +  D GS     S+   F   +  FL S  +F Y+R      E++
Sbjct:   10 RHTYLAFIGFGLGSWVISDFVFAEFAALMQKTPEGYSIGAYVIVALQSANIFPLLYML----FNSRQQLISIPTMIWGLLVLGMIACILLSIFWDTKTVIGGHLHSTALFAMIFCGGAVSATSTVVFYPFAATYPVMFTSALATGESLGAVIAGVLAIIQDVGSDPMTFSVGVAFLCGAFTFLISFASFAYLRRQTTSVEIF 207          
BLAST of NO11G01560 vs. NCBI_GenBank
Match: XP_008880398.1 (hypothetical protein, variant 1 [Aphanomyces invadans] >ETV91008.1 hypothetical protein, variant 1 [Aphanomyces invadans])

HSP 1 Score: 110.5 bits (275), Expect = 1.500e-20
Identity = 108/392 (27.55%), Postives = 176/392 (44.90%), Query Frame = 0
Query:   32 IHLALAAWGFSSWILFNGLWGQLPLFIRTLPEGNKLGVLILAAEQLAYIFPLLFMYKKRRFNNSRR--SQEMDIWIVLLSGLAVSLLLSRYWHAQAVIDKHLHSIGLLSLAFLTGAVCSSTGVVFTPYLATLPKSYTSAHTAGAGLSGLAVALLTLAADAGSLHPRLSIERYFNVLSLVFLGSCCAFYYVRTHINMEEMYEAIGHASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSLCDTQXXXXXXXXXXXXXXXXXXXXXXXXXXXGRATGESSRTKESYAAV-----FTLQCLLSALAYGMVPSILPLACSGYRDPSRTLMLSTVGFMCADPLGKLATSFLPTGRIFGLGLFTMAVAGWLLYCAVRSPKPPLSELPFGG 417
            ++ A   +G  SWI+ N ++ +     + +PE   +   ++ A Q A IFP L+M     FN+ ++  +    IW++L  G+   +LLS +W   +V   H HS  LL+L F  GAV ++T VV+ P+++T P  +TSA + G GLSG+   ++ +  D G+   RLS+  +F     VF  +  A++++ T      +   + H++                                          T+      XXXXXXXXXXXXXXX           ES   +  Y           Q +L A+++G++PSI+P   S Y   ++ L  S+V  M  DP  +  TSF     +  L   T+ V G ++  +  +  P  S   +GG
Sbjct:   83 VYAAFIVFGLGSWIMTNSVFIETAALFQRVPEKAAISAYLIVALQGANIFPTLYMV----FNSDQQLFTIRTAIWVLLALGVLTCVLLSLFWDITSVFWGHEHSTALLALVFFGGAVSATTTVVYYPFVSTFPPVFTSALSTGEGLSGVVAGVIGIWQDPGATPMRLSVSTFFRWAGGVFAVAMVAYWFLAT----SAIARDVQHSNYAEDPGAFECKFTPP--------------------------TTRSKSARSXXXXXXXXXXXXXXXPLVSPVAPHRFESPTHRRDYVLCKLWKPLLFQFVLCAMSFGVIPSIMPFLGSKYLSSAQVLKWSSVLSMACDPCARFLTSFYRWYNVTALSAMTLFV-GLVMVLSSTTADPIFSTYAYGG 439          
BLAST of NO11G01560 vs. NCBI_GenBank
Match: XP_012204773.1 (hypothetical protein SPRG_10326 [Saprolegnia parasitica CBS 223.65] >KDO24511.1 hypothetical protein SPRG_10326 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 108.6 bits (270), Expect = 5.800e-20
Identity = 101/393 (25.70%), Postives = 155/393 (39.44%), Query Frame = 0
Query:   33 HLALAAWGFSSWILFNGLWGQLPLFIRTLPEGNKLGVLILAAEQLAYIFPLLFMYKKRRFNNSRRSQEMD--IWIVLLSGLAVSLLLSRYWHAQAVIDKHLHSIGLLSLAFLTGAVCSSTGVVFTPYLATLPKSYTSAHTAGAGLSGLAVALLTLAADAGSLHPRLSIERYFNVLSLVFLGSCCAFYYVRTHINMEEMYEAIGHASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSLCDTQXXXXXXXXXXXXXXXXXXXXXXXXXXXGRATGESSRTKESYAAVFTLQCLLSALAYGMVPSILPLACSGYRDPSRTLMLSTVGFMCADPLGKLATSFLPTGRIFGLGLFTM--AVAGWLLYCAVRSPKPPLSELPFGGWVVIV 422
            ++A    G  SW++ + ++ ++   ++  PEG  +GV ++AA Q A IFP+L+M     FN+S++   +   IW +L  G+   LLL+  WH  + +     S  LL   F  G V +++ VVF P+++  P   TSA   G  L  +   +L L  D GS     SI  YF   ++VFL S  AF Y+RT+   E                                                    TQ                           G          +  A  F L C     ++ +VPS+LP+  S Y      L  ++V  M  DPL +  T+F  T R+    +FT+   VAG  +     +  P  S  P GG VV++
Sbjct:   22 YVAFLGLGLGSWVMSDFVFAEVAALVQHTPEGPAIGVYVIAALQSANIFPMLYML----FNSSQQRVSIPTMIWWLLAFGVMACLLLATTWHMTSSVFGEPRSSALLFFVFCGGIVSATSSVVFYPFVSMYPAISTSALATGESLGAVVAGVLALLQDVGSPEMHFSISTYFACAAVVFLVSMVAFSYLRTYGRPE----------------------------------------------------TQLSNERAWLLDPTQTFTCQEDWHVVRVIG----------QPLACQFALAC----FSFAVVPSVLPILGSKYMHSGTVLKWASVLGMLCDPLARFLTTFYHTRRV---SIFTLLALVAGLCMATQASARVPLWSRSPNGGIVVVL 341          
BLAST of NO11G01560 vs. NCBI_GenBank
Match: XP_008607893.1 (hypothetical protein SDRG_04022 [Saprolegnia diclina VS20] >EQC38301.1 hypothetical protein SDRG_04022 [Saprolegnia diclina VS20])

HSP 1 Score: 107.5 bits (267), Expect = 1.300e-19
Identity = 99/402 (24.63%), Postives = 155/402 (38.56%), Query Frame = 0
Query:   32 IHLALAAWGFSSWILFNGLWGQLPLFIRTLPEGNKLGVLILAAEQLAYIFPLLFMYKKRRFNNSRR--SQEMDIWIVLLSGLAVSLLLSRYWHAQAVIDKHLHSIGLLSLAFLTGAVCSSTGVVFTPYLATLPKSYTSAHTAGAGLSGLAVALLTLAADAGSLHPRLSIERYFNVLSLVFLGSCCAFYYV-----RTHINMEEMYEAIGHASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSLCDTQXXXXXXXXXXXXXXXXXXXXXXXXXXXGRATGESSRTKESYAAVFTLQCLLSALAYGMVPSILPLACSGYRDPSRTLMLSTVGFMCADPLGKLATSFLPTGRIFGLGLFTMAVAGWLLYCAVRSPKPPLSELPFGGWVVIVANSVF 427
            ++ A   +G  SWI+ N ++ ++    +  PE   +   ++ A Q + IFP L+M     FNN ++  S    IW +L  G+ V +LLS +W   +V   H HS  LL L            VV+ P++AT P  +TSA + G GLSG+   +L +  D G+ H  +++  YF   ++VFL +  AF ++      T I      E  G                                             T                              A    +            Q +L A+++G++PSILP   S Y + +  L  S+V  M  DPL +  TSF     +  L   T+ + G L+  +  +  P  S    GG   +V N VF
Sbjct:   44 VYAAFILFGLGSWIMSNCVFVEIAALYQRTPEKAAISAYLIVAIQASNIFPALYMV----FNNDQQLFSIRTAIWGLLSMGIVVCVLLSIFWDQTSVFFGHEHSTALLVLVXXXXXXXXXXSVVYYPFVATFPPLFTSALSTGEGLSGVIAGVLGIIQDPGATHMHITVGGYFFYGAVVFLVALLAFVFLVKSPWATQIQASMYREDGGDFDYKF---------------------------------------TPPLKRAPSPAMKMNETLPLVLPQSKHQFSTAVERRNYVVSKLWKPLLCQVVLCAMSFGVIPSILPFLGSKYSNSAEVLKWSSVLSMACDPLARFLTSFYRWYNVTVLTSLTV-LLGALMAVSATTAHPIFSSYALGGIAPVVGNCVF 401          
The following BLAST results are available for this feature:
BLAST of NO11G01560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26594.14.600e-2525.31riboflavin transporter 2 [Nannochloropsis gaditana... [more]
OQS02094.12.300e-2424.94hypothetical protein THRCLA_05502 [Thraustotheca c... [more]
OQR83826.11.200e-2226.12hypothetical protein ACHHYP_14251 [Achlya hypogyna... [more]
XP_008880401.16.200e-2227.61hypothetical protein, variant 4 [Aphanomyces invad... [more]
XP_012204772.11.800e-2124.88hypothetical protein SPRG_10325 [Saprolegnia paras... [more]
OQR97780.16.900e-2124.13hypothetical protein ACHHYP_10014 [Achlya hypogyna... [more]
XP_008613036.19.000e-2133.17hypothetical protein SDRG_08912 [Saprolegnia dicli... [more]
XP_008880398.11.500e-2027.55hypothetical protein, variant 1 [Aphanomyces invad... [more]
XP_012204773.15.800e-2025.70hypothetical protein SPRG_10326 [Saprolegnia paras... [more]
XP_008607893.11.300e-1924.63hypothetical protein SDRG_04022 [Saprolegnia dicli... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002108NSK002108Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01560.2NO11G01560.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G01560.1NO11G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|51825gene_5040Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01560.2NO11G01560.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G01560.1NO11G01560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01560 ID=NO11G01560|Name=NO11G01560|organism=Nannochloropsis oceanica|type=gene|length=2598bp
TCTTCTACTTGCATGTTCTTTCGAGACCTCGACAACACACTATGTATCCA
AGCCCAAAACTTCGCAAAGGAGCATCACAAGCTGCAGCATAAGAAGATAC
TAACCGCGAGAAGGAGCGAGACGAGAAGGAGAAGCGGGCCGGTTGCAATA
TAAGAGAGGCTCCGTCATCCATATGTGCGCTCGACGCGCACCTTCTGTGG
TTCATTAAAAGAGACTCCCGTAGCGGGCATCCAATCAATAAGAGTGCAGT
GAAAGTACATCGTTTCCAAAACATTTGTTGATGTTCCCGACTCTCTACCA
CCACGCACAGTGCCTGGTCAAGATGGAAAGCTCGAAGACATCTTGCAGCG
CAGGCGGCAGGGACCAACGACACATCCACTTGGCCTTGGCTGCGTGGGGC
TTTTCATCGTGGATCTTATTCAATGGTACGTCGTCAATGGCAGGAGGAGA
TGTGAAGTCTTAATATTATCGTCGATGGGACAGTTGTTTGTCTTGGTGTG
AGAAATGCCCGCTGTCCGCTTGGCTACCACCGAATATCAATGCTCTTTCC
GAAAACAGGCTTGTGGGGCCAGTTGCCGCTCTTTATCCGCACATTGCCGG
AGgtgagcagtagggaggatactgcagaggggaatgacaggctgctcgag
aaggaagcgtaattatctacgtgccgatatcatcaccacctcttcttatc
taaaccttcacatctacagGGCAACAAACTGGGAGTTCTCATTTTGGCTG
CAGAGCAGCTTGCCTACATCTTTCCATTACTGTTCATGTACAAGAAACGC
CGTTTCAACAATAGCCGCCGTTCCCAAGAGgtaagaatgaggtgatgata
ttacaatcaaacaggggaagctttgacaacttagaagattaaataagcga
acaagagggacaatcatgctcagctgatatccccctccctctgaggctca
catgcgtaccctataatcttattgtcgccctttcctttttccccattcac
ccgcagATGGACATCTGGATCGTCCTTCTCTCCGGCCTGGCCGTCTCTCT
TCTCCTCTCCCGCTACTGGCACGCGCAAGCCGTGATTGACAAGCACCTAC
ACAGTATCGGCCTCCTGAGCCTCGCCTTTCTCACAGGTGCGGTGTGCAGT
AGCACCGGCGTCGTCTTCACCCCCTACCTTGCAACTCTTCCCAAGAGCTA
CACGTCAGCCCATgtacgcaaggcgggaaggagggagaggagaaaatgga
ggcaagagcttcataagtttttgtactcatcccccccccccgtgcactca
tttcatcataccttcgttgtcaaatacagACAGCAGGTGCGGGTTTGAGC
GGCTTGGCGGTAGCCCTGTTGACTCTTGCCGCAGACGCAGGCTCGCTTCA
CCCGAGGTTGAGCATCGAGAGGTACTTTAATGTGCTGTCCCTGGTATTCC
TGGGGAGTTGTTGCGCATTTTATTATGTCCGGACGCATATCAACATGGAG
GAAATGTACGAAGCGATCGGCCATGCTTCCTCTTCCTCCCCCTCTCCGTC
CATATCCTCGCCAAGGCCAACAGCGGCAGCGGCAACGGCGGCGGCTGCGC
AGGAGAATGGAGAGGGAGGAGGAGGGGGAGGGGGGGACTATGGGTCCCTT
TGTGATACCCAGCATCACGGACACAACGACGACCAACCGCTCATTGCCCG
TGTAGTCGTCGACGATGACAGAGTCGCTGCGGCGGCAGCAACAGGAAGAG
CGACCGGCGAATCATCTCGAACGAAAGAGTCATACGCAGCAGTCTTTACC
TTGCAATGCCTGCTTTCTGCCCTTGCGTATGGCATGGTTCCCTCCATCCT
CCCTCTTGCCTGCAGCGGCTATCGCGACCCTTCCCGCACTTTGATGCTCT
CCACTGTTGGTTTTATGTGCGCTGATCCCTTGGGAAAGCTGGCCACAAGC
TTCTTACCCACCGGGCGGATTTTTGGACTGGGGCTCTTCACGATGGCGGT
GGCGGGGTGGTTGCTTTATTGTGCCGTGCGATCGCCGAAGCCGCCGTTAA
GTGAATTGCCTTTTGGGGGATGGGTGGTGATAGTGGCGAATTCCGTGTTC
AGTTTCGCATTTTCTTTTACGAGCATTTCGATTTTCTTTGACCGGCGAAG
GAAATTGGAGAAGGAGGGAGAGGAGGAAGAAGCCACGAAGGCCGCAGCTG
CTGTTTCCGGTGCGGGGGCAAGGGACGGGAGGGAGGTAGGAGAAGGAGGA
GAGAAGAGAGGAGGTGAGGGTGCGTATGAGTGGTTTGCGTGGTCGGCGTT
TATGATTCAAACGGGGGCCTTTTTGGGAACTGCCGTGTCTTTAGTAGTTG
TGTTGATGCTGTCCTGACGGGAAAGATAATCGAAGTGGAATTGAGATTTG
AGTGTACGTATGTGTGGATAAATGGATGTATGTACATGTGAAGGACTCAG
AGGTCGCAGTCCTTGGCGTTAGTAGTAGTTGTTGTTGGAGTAGGGGGTAA
GCAATAGATTCTCGCAACACTTTTCCTTGGGAAAAAAGAGAAGACGTGGC
GTTTCCTGTGCGTGGATCCAACAAGATGAAAAAAGGTTGAATGGTGTA
back to top

protein sequence of NO11G01560.2

>NO11G01560.2-protein ID=NO11G01560.2-protein|Name=NO11G01560.2|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MLFPKTGLWGQLPLFIRTLPEGNKLGVLILAAEQLAYIFPLLFMYKKRRF
NNSRRSQEMDIWIVLLSGLAVSLLLSRYWHAQAVIDKHLHSIGLLSLAFL
TGAVCSSTGVVFTPYLATLPKSYTSAHTAGAGLSGLAVALLTLAADAGSL
HPRLSIERYFNVLSLVFLGSCCAFYYVRTHINMEEMYEAIGHASSSSPSP
SISSPRPTAAAATAAAAQENGEGGGGGGGDYGSLCDTQHHGHNDDQPLIA
RVVVDDDRVAAAAATGRATGESSRTKESYAAVFTLQCLLSALAYGMVPSI
LPLACSGYRDPSRTLMLSTVGFMCADPLGKLATSFLPTGRIFGLGLFTMA
VAGWLLYCAVRSPKPPLSELPFGGWVVIVANSVFSFAFSFTSISIFFDRR
RKLEKEGEEEEATKAAAAVSGAGARDGREVGEGGEKRGGEGAYEWFAWSA
FMIQTGAFLGTAVSLVVVLMLS*
back to top

protein sequence of NO11G01560.1

>NO11G01560.1-protein ID=NO11G01560.1-protein|Name=NO11G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=515bp
MFPTLYHHAQCLVKMESSKTSCSAGGRDQRHIHLALAAWGFSSWILFNGL
WGQLPLFIRTLPEGNKLGVLILAAEQLAYIFPLLFMYKKRRFNNSRRSQE
MDIWIVLLSGLAVSLLLSRYWHAQAVIDKHLHSIGLLSLAFLTGAVCSST
GVVFTPYLATLPKSYTSAHTAGAGLSGLAVALLTLAADAGSLHPRLSIER
YFNVLSLVFLGSCCAFYYVRTHINMEEMYEAIGHASSSSPSPSISSPRPT
AAAATAAAAQENGEGGGGGGGDYGSLCDTQHHGHNDDQPLIARVVVDDDR
VAAAAATGRATGESSRTKESYAAVFTLQCLLSALAYGMVPSILPLACSGY
RDPSRTLMLSTVGFMCADPLGKLATSFLPTGRIFGLGLFTMAVAGWLLYC
AVRSPKPPLSELPFGGWVVIVANSVFSFAFSFTSISIFFDRRRKLEKEGE
EEEATKAAAAVSGAGARDGREVGEGGEKRGGEGAYEWFAWSAFMIQTGAF
LGTAVSLVVVLMLS*
back to top
Synonyms
Publications